Wall clock time and date at job start Tue Mar 31 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99505 * 2 1 4 4 H 1.48499 * 109.47336 * 269.99834 * 3 2 1 5 5 H 1.48504 * 109.47334 * 30.00125 * 3 2 1 6 6 H 1.48509 * 109.47109 * 149.99950 * 3 2 1 7 7 C 1.37870 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00164 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99816 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99834 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.47052 * 179.97438 * 13 11 10 15 15 C 1.34732 * 116.99962 * 180.02562 * 14 13 11 16 16 O 1.21490 * 120.00065 * 0.02562 * 15 14 13 17 17 C 1.47546 * 119.99734 * 180.02562 * 15 14 13 18 18 C 1.40391 * 119.93061 * 0.02562 * 17 15 14 19 19 C 1.36155 * 120.66951 * 179.97438 * 18 17 15 20 20 C 1.39552 * 120.19418 * 359.76250 * 19 18 17 21 21 N 1.36791 * 133.54078 * 179.55381 * 20 19 18 22 22 H 0.97001 * 125.41421 * 0.70662 * 21 20 19 23 23 N 1.39841 * 109.17801 * 180.43233 * 21 20 19 24 24 C 1.30193 * 110.12945 * 0.27073 * 23 21 20 25 25 C 1.40992 * 119.75137 * 0.49658 * 20 19 18 26 26 C 1.39008 * 119.92314 * 179.97438 * 17 15 14 27 27 H 0.96999 * 120.00760 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46659 * 59.99775 * 9 7 2 29 29 H 1.09007 * 109.46787 * 299.99957 * 9 7 2 30 30 H 0.97002 * 120.00353 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.46821 * 60.00508 * 13 11 10 32 32 H 1.08999 * 109.47511 * 300.00018 * 13 11 10 33 33 H 1.08003 * 119.66130 * 359.97438 * 18 17 15 34 34 H 1.07994 * 119.90040 * 180.02562 * 19 18 17 35 35 H 1.08000 * 126.14345 * 179.97438 * 24 23 21 36 36 H 1.07998 * 120.29682 * 359.97438 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5617 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 8 2.0075 -7.2862 -0.0015 15 6 2.7414 -8.4161 -0.0015 16 8 3.9546 -8.3525 -0.0010 17 6 2.0716 -9.7308 -0.0019 18 6 0.6695 -9.8026 -0.0029 19 6 0.0358 -11.0077 -0.0039 20 6 0.7768 -12.1903 -0.0089 21 7 0.4369 -13.5153 -0.0032 22 1 -0.4686 -13.8633 -0.0037 23 7 1.6021 -14.2885 -0.0030 24 6 2.6513 -13.5176 -0.0024 25 6 2.1855 -12.1333 -0.0023 26 6 2.8303 -10.8956 -0.0024 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8898 30 1 3.1569 -3.4353 -0.0009 31 1 3.3601 -5.9713 0.8884 32 1 3.3600 -5.9705 -0.8916 33 1 0.0877 -8.8927 -0.0030 34 1 -1.0433 -11.0485 -0.0051 35 1 3.6810 -13.8433 -0.0017 36 1 3.9090 -10.8431 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029322939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:58 Heat of formation + Delta-G solvation = -36.685514 kcal Electronic energy + Delta-G solvation = -22505.299969 eV Core-core repulsion = 18762.953627 eV Total energy + Delta-G solvation = -3742.346342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75156 -40.46921 -38.75954 -37.36691 -36.27451 -34.25792 -32.93231 -32.42157 -30.74795 -30.20599 -29.02843 -26.72359 -24.39565 -23.20365 -22.57154 -22.20681 -20.96509 -19.94684 -18.62075 -18.00441 -17.51068 -16.72266 -16.59994 -16.17220 -15.45588 -15.31401 -15.27500 -15.00592 -14.64140 -14.59700 -14.23492 -13.98867 -13.32785 -13.08341 -12.93640 -12.50801 -12.17890 -12.00608 -11.76730 -11.62208 -11.35080 -11.02539 -10.92863 -10.82167 -10.70450 -10.69941 -10.35348 -9.45033 -9.20444 -9.19200 -8.79192 -8.53784 -7.99943 -6.20540 -4.27955 0.40729 0.61043 2.02649 2.17586 2.35640 2.40189 3.16783 3.22674 3.28996 3.31289 3.43391 3.93010 4.07369 4.15104 4.31989 4.34513 4.61226 4.76564 4.83783 5.05452 5.14115 5.15649 5.24351 5.33405 5.34890 5.49874 5.82674 5.89358 5.95879 6.24991 6.31739 6.75200 7.05311 7.21413 7.29643 7.44705 7.58040 7.67229 7.90985 8.48918 8.70055 8.95241 9.38499 10.89550 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.048629 B = 0.002137 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.645626 B =13100.097806 C =13655.295605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.325 6.325 15 C 0.513 3.487 16 O -0.513 6.513 17 C -0.162 4.162 18 C -0.013 4.013 19 C -0.154 4.154 20 C 0.159 3.841 21 N -0.507 5.507 22 H 0.442 0.558 23 N -0.253 5.253 24 C 0.093 3.907 25 C -0.200 4.200 26 C 0.037 3.963 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.203 0.797 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -25.312 -0.015 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.027 4.027 14 O -0.240 6.240 15 C 0.359 3.641 16 O -0.403 6.403 17 C -0.165 4.165 18 C -0.034 4.034 19 C -0.176 4.176 20 C 0.041 3.959 21 N -0.220 5.220 22 H 0.287 0.713 23 N -0.066 5.066 24 C -0.106 4.106 25 C -0.208 4.208 26 C 0.017 3.983 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.171 0.829 34 H 0.154 0.846 35 H 0.219 0.781 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.463 -26.508 -0.006 26.733 hybrid contribution 0.787 1.739 -0.017 1.909 sum 4.250 -24.769 -0.023 25.131 Atomic orbital electron populations 1.69969 1.06113 1.27417 1.48694 1.24953 0.94941 0.99506 0.94619 0.86387 0.79604 0.82503 0.78249 1.20432 1.20991 1.19712 1.21211 0.93348 0.90304 1.53491 0.91746 1.19175 0.88162 0.81535 0.98026 1.46363 1.11540 1.05354 1.72404 1.19882 0.89109 0.83982 0.78730 1.90701 1.16326 1.84564 1.49642 1.22882 0.94384 0.80754 1.04720 1.86586 1.39904 1.13853 1.83616 1.20999 0.85487 0.84912 0.72729 1.90833 1.14750 1.88020 1.46675 1.18764 0.93815 0.89839 1.14048 1.21131 0.93139 0.98395 0.90734 1.19804 1.00083 0.88832 1.08917 1.19106 0.94532 0.86351 0.95958 1.46008 1.08058 1.01728 1.66245 0.71273 1.76611 0.91517 1.19844 1.18595 1.25213 0.98798 0.88795 0.97788 1.19771 0.92223 0.94018 1.14762 1.20716 1.00496 0.88398 0.88740 0.92373 0.95244 0.95248 0.77394 0.88387 0.88380 0.82940 0.84573 0.78086 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 10 N -0.71 -14.31 5.55 -61.47 -0.34 -14.65 16 11 C 0.50 9.75 7.91 -10.98 -0.09 9.66 16 12 O -0.53 -12.67 16.50 -14.10 -0.23 -12.90 16 13 C 0.05 0.74 5.95 36.01 0.21 0.95 16 14 O -0.32 -4.96 8.98 -47.26 -0.42 -5.39 16 15 C 0.51 6.98 7.89 34.53 0.27 7.25 16 16 O -0.51 -7.63 16.11 -19.26 -0.31 -7.94 16 17 C -0.16 -1.80 5.87 -105.01 -0.62 -2.42 16 18 C -0.01 -0.13 9.53 -39.52 -0.38 -0.51 16 19 C -0.15 -1.28 10.00 -39.84 -0.40 -1.67 16 20 C 0.16 1.38 7.33 -84.12 -0.62 0.76 16 21 N -0.51 -3.83 7.35 32.40 0.24 -3.59 16 22 H 0.44 2.05 8.96 -182.79 -1.64 0.41 16 23 N -0.25 -2.18 12.54 31.89 0.40 -1.78 16 24 C 0.09 0.67 12.29 -15.11 -0.19 0.48 16 25 C -0.20 -1.77 6.35 -105.23 -0.67 -2.44 16 26 C 0.04 0.35 9.65 -38.80 -0.37 -0.02 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 30 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.15 1.56 7.58 -52.48 -0.40 1.16 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.20 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 1.19 7.63 -52.49 -0.40 0.79 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -34.74 331.18 -8.09 -42.83 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.85 Total: 2.45 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -3.28 Total: 5.37 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 1.03 Total: -44.90 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.97 Total: -26.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.74 -8.09 -42.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029322939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.141 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds