Wall clock time and date at job start Tue Mar 31 2020 03:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99505 * 2 1 4 4 H 1.48499 * 109.47336 * 269.99834 * 3 2 1 5 5 H 1.48504 * 109.47334 * 30.00125 * 3 2 1 6 6 H 1.48509 * 109.47109 * 149.99950 * 3 2 1 7 7 C 1.37870 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00164 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99816 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99834 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.47052 * 179.97438 * 13 11 10 15 15 C 1.34732 * 116.99962 * 180.02562 * 14 13 11 16 16 O 1.21490 * 120.00065 * 0.02562 * 15 14 13 17 17 C 1.47546 * 119.99734 * 180.02562 * 15 14 13 18 18 C 1.40391 * 119.93061 * 0.02562 * 17 15 14 19 19 C 1.36155 * 120.66951 * 179.97438 * 18 17 15 20 20 C 1.39552 * 120.19418 * 359.76250 * 19 18 17 21 21 N 1.36791 * 133.54078 * 179.55381 * 20 19 18 22 22 H 0.97001 * 125.41421 * 0.70662 * 21 20 19 23 23 N 1.39841 * 109.17801 * 180.43233 * 21 20 19 24 24 C 1.30193 * 110.12945 * 0.27073 * 23 21 20 25 25 C 1.40992 * 119.75137 * 0.49658 * 20 19 18 26 26 C 1.39008 * 119.92314 * 179.97438 * 17 15 14 27 27 H 0.96999 * 120.00760 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46659 * 59.99775 * 9 7 2 29 29 H 1.09007 * 109.46787 * 299.99957 * 9 7 2 30 30 H 0.97002 * 120.00353 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.46821 * 60.00508 * 13 11 10 32 32 H 1.08999 * 109.47511 * 300.00018 * 13 11 10 33 33 H 1.08003 * 119.66130 * 359.97438 * 18 17 15 34 34 H 1.07994 * 119.90040 * 180.02562 * 19 18 17 35 35 H 1.08000 * 126.14345 * 179.97438 * 24 23 21 36 36 H 1.07998 * 120.29682 * 359.97438 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5617 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 8 2.0075 -7.2862 -0.0015 15 6 2.7414 -8.4161 -0.0015 16 8 3.9546 -8.3525 -0.0010 17 6 2.0716 -9.7308 -0.0019 18 6 0.6695 -9.8026 -0.0029 19 6 0.0358 -11.0077 -0.0039 20 6 0.7768 -12.1903 -0.0089 21 7 0.4369 -13.5153 -0.0032 22 1 -0.4686 -13.8633 -0.0037 23 7 1.6021 -14.2885 -0.0030 24 6 2.6513 -13.5176 -0.0024 25 6 2.1855 -12.1333 -0.0023 26 6 2.8303 -10.8956 -0.0024 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8898 30 1 3.1569 -3.4353 -0.0009 31 1 3.3601 -5.9713 0.8884 32 1 3.3600 -5.9705 -0.8916 33 1 0.0877 -8.8927 -0.0030 34 1 -1.0433 -11.0485 -0.0051 35 1 3.6810 -13.8433 -0.0017 36 1 3.9090 -10.8431 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029322939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:57 Heat of formation + Delta-G solvation = -60.807502 kcal Electronic energy + Delta-G solvation = -22506.345977 eV Core-core repulsion = 18762.953627 eV Total energy + Delta-G solvation = -3743.392350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.42009 -41.56841 -40.34184 -38.17620 -37.38952 -36.15999 -34.40005 -33.58140 -31.60652 -30.92311 -30.44600 -28.45887 -25.40130 -24.40318 -23.90471 -22.81860 -21.90826 -21.61555 -19.50868 -19.14873 -18.69010 -18.06926 -17.76900 -17.40344 -16.94930 -16.75890 -16.19965 -16.09362 -15.87813 -15.68305 -15.21867 -14.76922 -14.56539 -14.51301 -14.12383 -13.94086 -13.67047 -13.64204 -12.92847 -12.90345 -12.70846 -12.31447 -12.21988 -11.98265 -11.87715 -11.76240 -11.48533 -11.45952 -10.88594 -10.80556 -9.91227 -9.90312 -9.20664 -8.28508 -6.44875 -0.34672 -0.09860 1.23357 1.38554 1.45685 1.47114 1.47920 1.58473 1.58707 1.65263 2.35096 2.59193 2.67212 3.06745 3.42318 3.55945 3.63033 3.72664 3.76019 4.07540 4.08722 4.10144 4.15151 4.45307 4.66933 4.84836 5.05260 5.11367 5.22363 5.23823 5.25393 5.33157 5.43829 5.57827 5.64796 5.83540 6.21178 6.48595 6.58356 6.64608 6.80767 7.22029 7.37787 8.83495 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.048629 B = 0.002137 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.645626 B =13100.097806 C =13655.295605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.582 6.582 13 C 0.061 3.939 14 O -0.343 6.343 15 C 0.517 3.483 16 O -0.528 6.528 17 C -0.183 4.183 18 C -0.024 4.024 19 C -0.148 4.148 20 C 0.154 3.846 21 N -0.501 5.501 22 H 0.453 0.547 23 N -0.275 5.275 24 C 0.103 3.897 25 C -0.213 4.213 26 C 0.047 3.953 27 H 0.269 0.731 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.413 0.587 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.238 0.762 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -26.348 -0.009 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.286 3.714 12 O -0.463 6.463 13 C -0.015 4.015 14 O -0.258 6.258 15 C 0.364 3.636 16 O -0.420 6.420 17 C -0.186 4.186 18 C -0.045 4.045 19 C -0.169 4.169 20 C 0.035 3.965 21 N -0.216 5.216 22 H 0.300 0.700 23 N -0.087 5.087 24 C -0.095 4.095 25 C -0.221 4.221 26 C 0.027 3.973 27 H 0.078 0.922 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.249 0.751 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.254 0.746 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.687 -27.593 -0.001 28.173 hybrid contribution 0.054 1.902 -0.020 1.903 sum 5.740 -25.691 -0.021 26.324 Atomic orbital electron populations 1.70128 1.08207 1.28593 1.49895 1.26048 0.95788 1.03863 0.93904 0.85155 0.78491 0.77007 0.78549 1.19673 1.21079 1.17923 1.21620 0.94447 0.90421 1.52937 0.89581 1.18623 0.88572 0.83779 0.94607 1.46037 1.11729 1.04733 1.72570 1.20674 0.89303 0.84673 0.76753 1.90679 1.18858 1.85293 1.51442 1.22756 0.92573 0.78951 1.07267 1.86582 1.40794 1.14376 1.84060 1.21343 0.85340 0.84938 0.72002 1.90813 1.15221 1.88118 1.47811 1.18753 0.94350 0.89106 1.16431 1.21087 0.92844 0.98809 0.91748 1.19966 1.01233 0.88068 1.07677 1.19272 0.94841 0.86866 0.95532 1.46077 1.08662 1.01230 1.65594 0.69962 1.76617 0.92034 1.20469 1.19575 1.25827 1.00091 0.87638 0.95937 1.20005 0.92485 0.94590 1.14975 1.20805 1.00989 0.87994 0.87545 0.92232 0.98935 0.98936 0.75106 0.85709 0.85692 0.83864 0.82307 0.74602 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.44 0.28 -54.95 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.98 41.65 29.54 68.60 2.03 43.68 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.56 -29.54 9.28 25.60 0.24 -29.31 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.26 5.43 85.64 0.46 14.72 16 10 N -0.70 -28.45 5.55 -466.78 -2.59 -31.04 16 11 C 0.50 19.69 7.91 87.66 0.69 20.38 16 12 O -0.58 -28.68 16.50 15.77 0.26 -28.42 16 13 C 0.06 1.73 5.95 71.24 0.42 2.16 16 14 O -0.34 -10.38 8.98 -50.04 -0.45 -10.83 16 15 C 0.52 13.72 7.89 70.28 0.55 14.27 16 16 O -0.53 -15.02 16.11 19.87 0.32 -14.70 16 17 C -0.18 -3.99 5.87 -20.11 -0.12 -4.11 16 18 C -0.02 -0.47 9.53 22.31 0.21 -0.26 16 19 C -0.15 -2.28 10.00 22.10 0.22 -2.06 16 20 C 0.15 2.44 7.33 39.36 0.29 2.73 16 21 N -0.50 -6.67 7.35 -51.40 -0.38 -7.05 16 22 H 0.45 3.46 8.96 -213.49 -1.91 1.54 16 23 N -0.27 -4.14 12.54 -53.02 -0.66 -4.81 16 24 C 0.10 1.23 12.29 86.96 1.07 2.30 16 25 C -0.21 -3.37 6.35 -20.26 -0.13 -3.50 16 26 C 0.05 0.82 9.65 22.77 0.22 1.04 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 30 H 0.41 13.46 8.32 -92.71 -0.77 12.68 16 31 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.14 3.06 7.58 -2.91 -0.02 3.04 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.24 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.16 2.29 7.63 -2.91 -0.02 2.27 16 Total: -1.00 -77.05 331.18 1.88 -75.16 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -1.53 Total: 13.93 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 4.60 Total: 19.03 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -3.35 Total: -97.85 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: 0.13 Total: -53.95 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -77.05 1.88 -75.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029322939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.354 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds