Wall clock time and date at job start Tue Mar 31 2020 04:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35943 * 116.99808 * 2 1 4 4 C 1.38183 * 120.01059 * 359.71906 * 3 2 1 5 5 C 1.39763 * 119.85926 * 179.79641 * 4 3 2 6 6 C 1.47358 * 120.07139 * 180.25747 * 5 4 3 7 7 N 1.29821 * 120.00376 * 180.20581 * 6 5 4 8 8 N 1.40097 * 120.00363 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00437 * 179.97438 * 8 7 6 10 10 O 1.21314 * 119.99992 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00171 * 179.97438 * 9 8 7 12 12 C 1.47201 * 109.47178 * 180.02562 * 11 9 8 13 13 N 9.40398 * 157.91974 * 180.42543 * 4 1 2 14 14 C 1.39829 * 119.86469 * 0.46188 * 5 4 3 15 15 C 1.37765 * 120.01678 * 359.79200 * 14 5 4 16 16 C 1.38966 * 120.14575 * 359.97438 * 15 14 5 17 17 O 1.35693 * 119.93530 * 179.97438 * 16 15 14 18 18 C 1.34791 * 116.99976 * 354.37865 * 17 16 15 19 19 H 1.07993 * 119.99758 * 5.07118 * 18 17 16 20 20 C 1.38628 * 119.99786 * 185.06387 * 18 17 16 21 21 N 1.31571 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47358 * 60.00202 * 22 20 18 24 24 H 1.48502 * 109.46875 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47092 * 299.99776 * 22 20 18 26 26 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47514 * 60.00448 * 1 2 3 28 28 H 1.08998 * 109.47061 * 300.00034 * 1 2 3 29 29 H 1.08004 * 120.07251 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.99666 * 0.20512 * 6 5 4 31 31 H 0.97006 * 119.99792 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.47315 * 300.00278 * 11 9 8 33 33 H 1.08992 * 109.47211 * 60.00632 * 11 9 8 34 34 H 1.07999 * 119.99173 * 179.76851 * 14 5 4 35 35 H 1.08004 * 119.92725 * 179.97438 * 15 14 5 36 36 H 0.97001 * 119.99984 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2937 2.3703 -0.0059 5 6 1.9314 3.6139 -0.0015 6 6 1.1336 4.8528 -0.0020 7 7 1.7274 6.0073 -0.0021 8 7 0.9689 7.1852 -0.0031 9 6 1.5852 8.3837 -0.0026 10 8 2.7969 8.4427 -0.0017 11 6 0.7693 9.6507 -0.0042 12 6 1.6704 10.8147 -0.0039 13 7 2.3658 11.7130 -0.0027 14 6 3.3282 3.6802 -0.0011 15 6 4.0731 2.5213 -0.0005 16 6 3.4396 1.2845 0.0001 17 8 4.1775 0.1457 0.0001 18 6 5.5133 0.2821 -0.1182 19 1 5.9570 1.2667 -0.1249 20 6 6.3174 -0.8414 -0.2310 21 7 5.7767 -2.0409 -0.2231 22 14 8.1687 -0.6524 -0.3941 23 1 8.7015 0.0517 0.7998 24 1 8.7959 -1.9944 -0.4989 25 1 8.4802 0.1356 -1.6136 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.2151 2.3153 -0.0100 30 1 0.0548 4.8004 -0.0024 31 1 -0.0001 7.1381 -0.0034 32 1 0.1418 9.6777 -0.8951 33 1 0.1393 9.6783 0.8848 34 1 3.8231 4.6401 -0.0015 35 1 5.1518 2.5742 -0.0006 36 1 6.3394 -2.8271 -0.3024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033957686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:41 Heat of formation + Delta-G solvation = 6.133511 kcal Electronic energy + Delta-G solvation = -22560.176088 eV Core-core repulsion = 18819.686518 eV Total energy + Delta-G solvation = -3740.489570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96379 -39.67558 -37.66139 -37.22697 -36.60867 -35.61879 -32.85648 -32.33332 -30.87468 -29.67419 -28.74247 -26.65504 -25.54421 -23.37084 -21.84101 -21.26431 -20.44996 -18.46059 -18.16571 -17.74756 -17.28719 -16.96156 -16.18140 -15.87449 -15.25889 -15.23257 -14.66336 -14.60983 -14.20084 -14.08351 -13.92933 -13.57974 -13.44649 -13.13601 -12.77050 -12.69144 -12.42460 -12.08335 -11.78556 -11.59478 -11.50770 -11.17239 -11.00272 -10.82941 -10.58499 -10.52084 -10.36668 -10.06318 -9.53783 -9.21761 -8.78487 -7.98421 -6.95365 -6.58334 -4.10548 1.20319 1.93431 2.12983 2.23567 2.46321 2.76088 2.94265 3.09784 3.13240 3.14370 3.45858 3.87201 3.92352 4.22089 4.46726 4.61733 4.64475 4.75404 4.92877 4.99993 5.03949 5.39439 5.48959 5.53354 5.77734 5.78064 5.88955 6.12566 6.24855 6.47036 6.78002 6.86252 6.95341 7.13584 7.18750 7.23083 7.45056 7.49665 7.82216 8.06601 8.29419 8.85217 9.52542 10.57358 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.002877 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.731445 B = 9729.243930 C =11496.801579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.148 4.148 6 C 0.156 3.844 7 N -0.267 5.267 8 N -0.583 5.583 9 C 0.532 3.468 10 O -0.496 6.496 11 C -0.036 4.036 12 C 0.217 3.783 13 N -0.409 5.409 14 C -0.038 4.038 15 C -0.227 4.227 16 C 0.151 3.849 17 O -0.148 6.148 18 C -0.390 4.390 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.847 5.847 22 Si 0.944 3.056 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.267 1.267 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.381 0.619 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 12.208 0.212 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.051 4.051 7 N -0.073 5.073 8 N -0.325 5.325 9 C 0.315 3.685 10 O -0.368 6.368 11 C -0.080 4.080 12 C -0.102 4.102 13 N -0.085 5.085 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.094 3.906 17 O -0.049 6.049 18 C -0.465 4.465 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.479 5.479 22 Si 0.768 3.232 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.219 0.781 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.389 13.518 0.218 19.028 hybrid contribution -1.136 -0.447 -0.076 1.223 sum -14.525 13.071 0.142 19.541 Atomic orbital electron populations 1.22902 0.80330 1.03048 1.00252 1.86251 1.19441 1.26156 1.89775 1.17948 0.89320 0.84465 1.07695 1.20639 0.98357 0.90580 1.05864 1.17437 0.92480 0.88865 1.16474 1.24393 0.96996 0.90755 0.92956 1.75227 1.21863 0.92016 1.18186 1.46748 1.07877 1.03894 1.73948 1.19773 0.88569 0.82747 0.77385 1.90834 1.13859 1.86337 1.45725 1.19047 0.95540 0.85066 1.08344 1.27937 0.94143 0.94012 0.94116 1.81226 1.07471 1.12063 1.07784 1.20969 0.92369 0.97862 0.94680 1.20888 1.00885 0.90656 1.12238 1.18882 0.88301 0.87689 0.95754 1.84009 1.19722 1.25823 1.75298 1.21471 0.78380 0.95115 1.51579 0.88499 1.25388 1.00865 0.94154 0.96077 1.70060 1.36703 0.97789 1.43354 0.85724 0.79823 0.78141 0.79516 1.19209 1.20137 1.19206 0.89056 0.93503 0.93524 0.85911 0.87463 0.78106 0.84102 0.84103 0.85824 0.84471 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -6.08 10.28 -34.18 -0.35 -6.43 16 3 C 0.05 1.03 6.70 -39.12 -0.26 0.77 16 4 C -0.13 -2.13 8.77 -39.03 -0.34 -2.47 16 5 C -0.15 -2.38 5.87 -105.02 -0.62 -3.00 16 6 C 0.16 1.94 10.74 -14.69 -0.16 1.79 16 7 N -0.27 -3.70 10.14 32.14 0.33 -3.37 16 8 N -0.58 -5.36 6.26 31.22 0.20 -5.17 16 9 C 0.53 5.33 7.93 -10.99 -0.09 5.24 16 10 O -0.50 -8.12 16.37 5.53 0.09 -8.02 16 11 C -0.04 -0.14 6.19 -30.67 -0.19 -0.33 16 12 C 0.22 2.02 14.67 -20.76 -0.30 1.71 16 13 N -0.41 -5.29 18.54 42.15 0.78 -4.51 16 14 C -0.04 -0.70 9.57 -39.16 -0.37 -1.08 16 15 C -0.23 -4.77 9.14 -39.48 -0.36 -5.13 16 16 C 0.15 3.54 6.67 -38.83 -0.26 3.28 16 17 O -0.15 -4.12 9.53 -14.28 -0.14 -4.26 16 18 C -0.39 -10.51 9.48 30.88 0.29 -10.22 16 19 H 0.10 2.39 5.19 -52.49 -0.27 2.12 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 21 N -0.85 -24.06 13.67 55.48 0.76 -23.30 16 22 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 28 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 29 H 0.12 1.49 6.28 -52.48 -0.33 1.16 16 30 H 0.11 0.87 8.02 -52.48 -0.42 0.45 16 31 H 0.38 1.61 8.65 -182.59 -1.58 0.03 16 32 H 0.14 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.14 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.12 2.23 7.54 -52.49 -0.40 1.83 16 35 H 0.14 2.87 5.62 -52.48 -0.29 2.58 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -38.08 336.05 -4.55 -42.63 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.49 Total: -0.45 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.77 Total: -7.03 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 2.06 Total: -36.35 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.40 Total: -18.71 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.08 -4.55 -42.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033957686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.768 kcal (2) G-P(sol) polarization free energy of solvation -38.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds