Wall clock time and date at job start Tue Mar 31 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 126.77736 * 2 1 4 4 C 1.41383 * 103.98619 * 180.10027 * 3 2 1 5 5 C 1.50697 * 126.79927 * 179.89071 * 4 3 2 6 6 N 1.46507 * 109.46936 * 94.71226 * 5 4 3 7 7 C 1.46499 * 119.99896 * 274.99391 * 6 5 4 8 8 S 1.65601 * 119.99820 * 94.99978 * 6 5 4 9 9 O 1.42104 * 106.40162 * 156.46120 * 8 6 5 10 10 O 1.42097 * 106.40701 * 23.53573 * 8 6 5 11 11 N 1.65608 * 107.21642 * 269.99450 * 8 6 5 12 12 C 1.46497 * 120.00164 * 270.00708 * 11 8 6 13 13 C 1.46499 * 119.99720 * 90.00318 * 11 8 6 14 14 C 1.50697 * 109.47343 * 95.00167 * 13 11 8 15 15 H 1.08007 * 119.99835 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00180 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99823 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 120.00187 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47278 * 89.99887 * 18 16 14 20 20 H 1.48494 * 109.47450 * 210.00327 * 18 16 14 21 21 H 1.48500 * 109.47151 * 330.00213 * 18 16 14 22 22 N 1.30177 * 106.39274 * 359.62634 * 4 3 2 23 23 O 1.20917 * 111.60720 * 0.24195 * 22 4 3 24 24 H 1.08998 * 109.47018 * 180.29781 * 1 2 3 25 25 H 1.09000 * 109.46906 * 300.29685 * 1 2 3 26 26 H 1.08999 * 109.47454 * 60.29183 * 1 2 3 27 27 H 1.07998 * 128.00896 * 359.96619 * 3 2 1 28 28 H 1.08999 * 109.47422 * 334.70943 * 5 4 3 29 29 H 1.09004 * 109.46662 * 214.70318 * 5 4 3 30 30 H 1.09001 * 109.46990 * 270.00308 * 7 6 5 31 31 H 1.08997 * 109.46771 * 30.00253 * 7 6 5 32 32 H 1.08998 * 109.47122 * 150.00130 * 7 6 5 33 33 H 1.08999 * 109.47289 * 89.99599 * 12 11 8 34 34 H 1.09000 * 109.47051 * 210.00377 * 12 11 8 35 35 H 1.09006 * 109.47040 * 329.99513 * 12 11 8 36 36 H 1.09000 * 109.47068 * 215.00148 * 13 11 8 37 37 H 1.09001 * 109.47179 * 334.99788 * 13 11 8 38 38 H 0.97002 * 119.99947 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.3001 -0.0057 6 7 5.4026 1.4504 1.3698 7 6 4.9177 2.5566 2.1988 8 16 6.4950 0.3698 1.9873 9 8 7.1672 1.0391 3.0454 10 8 7.1705 -0.1987 0.8739 11 7 5.6295 -0.8574 2.6855 12 6 5.2449 -0.7719 4.0965 13 6 5.2483 -2.0285 1.8921 14 6 6.2682 -3.1207 2.0867 15 1 7.1158 -2.9586 2.7362 16 6 6.1198 -4.3266 1.4349 17 7 7.0102 -5.2796 1.6045 18 14 4.6543 -4.6067 0.3111 19 1 5.0020 -4.1860 -1.0700 20 1 4.2964 -6.0479 0.3142 21 1 3.4993 -3.8089 0.7956 22 7 3.4763 -0.7564 0.0046 23 8 2.3095 -1.0736 0.0060 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3633 0.5184 0.8873 26 1 -0.3634 0.5093 -0.8926 27 1 2.0346 2.1271 -0.0005 28 1 4.7632 2.2850 -0.4451 29 1 5.6608 0.7549 -0.5920 30 1 5.5699 3.4204 2.0695 31 1 3.9035 2.8188 1.8977 32 1 4.9191 2.2537 3.2458 33 1 4.2734 -0.2846 4.1795 34 1 5.1855 -1.7752 4.5184 35 1 5.9899 -0.1922 4.6417 36 1 4.2697 -2.3834 2.2152 37 1 5.2057 -1.7548 0.8378 38 1 6.9056 -6.1281 1.1462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042159227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:45 Heat of formation + Delta-G solvation = 4.780909 kcal Electronic energy + Delta-G solvation = -24626.283321 eV Core-core repulsion = 21021.179049 eV Total energy + Delta-G solvation = -3605.104272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.84317 -36.86097 -36.64234 -35.53545 -35.21766 -33.86443 -33.08255 -32.27334 -28.36221 -28.21764 -27.82560 -25.26567 -24.81697 -23.03877 -21.79694 -20.19119 -18.57666 -17.66440 -17.43594 -17.14252 -16.68968 -16.51217 -16.00351 -15.05141 -14.80287 -14.17734 -13.93444 -13.86126 -13.55804 -13.44399 -13.18573 -12.84834 -12.79940 -12.49048 -12.41397 -12.32222 -12.20717 -11.71486 -11.47866 -11.30116 -11.24346 -11.16295 -10.83480 -10.58033 -10.28761 -10.17212 -10.04621 -9.45685 -9.26631 -9.16770 -8.46822 -8.00426 -5.97703 -3.96188 1.06316 1.54564 2.24313 3.16087 3.37766 3.43548 3.47361 3.53697 3.98216 4.22214 4.40585 4.52409 4.79154 4.88557 5.00439 5.10590 5.17446 5.19521 5.35334 5.39888 5.40723 5.54915 5.60681 5.62887 5.70211 5.76418 5.91957 6.00463 6.03806 6.26151 6.45968 6.61022 7.00651 7.25701 7.49818 7.72522 8.41014 8.59727 9.05837 9.62728 11.15587 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.009158 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.085516 B = 3056.837970 C = 4776.555630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.043 4.043 3 C -0.224 4.224 4 C -0.014 4.014 5 C 0.196 3.804 6 N -1.011 6.011 7 C 0.098 3.902 8 S 2.777 3.223 9 O -0.989 6.989 10 O -0.956 6.956 11 N -0.987 5.987 12 C 0.096 3.904 13 C 0.229 3.771 14 C -0.531 4.531 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.870 3.130 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.256 1.256 22 N -0.330 5.330 23 O 0.111 5.889 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.168 0.832 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.049 0.951 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.085 16.983 -2.226 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.246 4.246 4 C -0.175 4.175 5 C 0.069 3.931 6 N -0.848 5.848 7 C -0.048 4.048 8 S 2.785 3.215 9 O -0.973 6.973 10 O -0.940 6.940 11 N -0.829 5.829 12 C -0.051 4.051 13 C 0.106 3.894 14 C -0.570 4.570 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.697 3.303 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.180 1.180 22 N -0.030 5.030 23 O 0.041 5.959 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.185 0.815 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.219 15.873 -2.307 20.785 hybrid contribution -1.548 0.398 -0.503 1.676 sum -14.767 16.271 -2.811 22.152 Atomic orbital electron populations 1.20294 0.84359 1.04642 1.03696 1.24528 0.96398 0.86531 1.03243 1.22275 0.91181 1.00588 1.10537 1.24129 0.98005 0.90503 1.04854 1.19543 0.90125 0.99831 0.83567 1.58352 1.63212 1.42546 1.20739 1.21390 0.99765 0.89254 0.94398 1.02249 0.73624 0.72311 0.73346 1.93529 1.71659 1.75344 1.56771 1.93624 1.70566 1.76876 1.52894 1.57421 1.73939 1.33354 1.18210 1.21359 0.98374 1.03592 0.81759 1.19584 0.96074 0.82930 0.90859 1.21426 1.09515 0.97102 1.28943 0.90713 1.24837 0.96190 0.95772 0.96105 1.69916 1.35222 1.05183 1.43463 0.86914 0.84093 0.77117 0.82174 1.19885 1.21505 1.17993 1.74128 0.96455 1.15963 1.16489 1.84955 1.11362 1.33113 1.66498 0.89941 0.89424 0.89416 0.81476 0.88009 0.87077 0.92425 0.91432 0.91303 0.94624 0.90139 0.91398 0.95569 0.93284 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.00 0.38 -0.11 16 2 C -0.04 -0.50 7.49 -35.30 -0.26 -0.76 16 3 C -0.22 -2.47 11.06 -39.38 -0.44 -2.91 16 4 C -0.01 -0.21 6.91 -82.10 -0.57 -0.78 16 5 C 0.20 2.73 6.25 -5.19 -0.03 2.70 16 6 N -1.01 -15.43 3.23 -123.05 -0.40 -15.83 16 7 C 0.10 1.10 10.31 59.85 0.62 1.71 16 8 S 2.78 57.80 6.02 -107.50 -0.65 57.15 16 9 O -0.99 -21.23 15.81 -57.17 -0.90 -22.14 16 10 O -0.96 -23.59 15.66 -57.17 -0.90 -24.49 16 11 N -0.99 -21.59 3.23 -123.05 -0.40 -21.99 16 12 C 0.10 1.73 10.68 59.85 0.64 2.37 16 13 C 0.23 5.80 3.34 -5.20 -0.02 5.78 16 14 C -0.53 -16.03 9.94 -34.44 -0.34 -16.37 16 15 H 0.07 2.46 8.06 -52.48 -0.42 2.03 16 16 C 0.07 2.24 5.47 -17.82 -0.10 2.14 16 17 N -0.90 -28.87 13.96 55.43 0.77 -28.09 16 18 Si 0.87 22.67 27.47 -169.99 -4.67 18.00 16 19 H -0.27 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 N -0.33 -6.09 9.12 33.42 0.30 -5.78 16 23 O 0.11 1.82 11.20 17.17 0.19 2.01 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.10 0.97 8.11 -51.93 -0.42 0.54 16 29 H 0.11 1.76 6.91 -51.93 -0.36 1.40 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.50 8.07 -51.93 -0.42 1.08 16 35 H 0.07 1.16 7.02 -51.93 -0.36 0.80 16 36 H 0.03 0.66 7.17 -51.93 -0.37 0.29 16 37 H 0.05 1.27 4.91 -51.93 -0.25 1.02 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -38.62 331.51 -6.91 -45.53 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.14 Total: -3.15 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.12 Total: -6.22 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: 0.28 Total: -71.70 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.61 Total: -44.61 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Atomic # 16 Polarization: 57.80 SS G_CDS: -0.65 Total: 57.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.62 -6.91 -45.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042159227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.306 kcal (2) G-P(sol) polarization free energy of solvation -38.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds