Wall clock time and date at job start Tue Mar 31 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46509 * 120.00193 * 2 1 4 4 C 1.50694 * 109.47103 * 89.99860 * 3 2 1 5 5 H 1.08001 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00117 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99513 * 0.02562 * 6 4 3 8 8 Si 1.86791 * 120.00184 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47107 * 59.99726 * 8 6 4 10 10 H 1.48500 * 109.47099 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47216 * 299.99902 * 8 6 4 12 12 C 1.34774 * 120.00053 * 179.72421 * 2 1 3 13 13 O 1.21583 * 120.00350 * 180.02562 * 12 2 1 14 14 N 1.34775 * 119.99679 * 359.97438 * 12 2 1 15 15 C 1.39443 * 119.99875 * 174.70317 * 14 12 2 16 16 C 1.38970 * 119.85368 * 146.61047 * 15 14 12 17 17 C 1.38266 * 120.40085 * 179.97438 * 16 15 14 18 18 C 1.38798 * 119.82815 * 359.97438 * 17 16 15 19 19 C 1.41100 * 119.92748 * 0.02562 * 18 17 16 20 20 C 1.38304 * 119.89619 * 359.74249 * 19 18 17 21 21 C 1.47865 * 105.84438 * 179.97438 * 19 18 17 22 22 O 1.21444 * 125.74670 * 179.97438 * 21 19 18 23 23 N 1.34531 * 108.51651 * 0.02562 * 21 19 18 24 24 C 1.34505 * 111.09877 * 359.97438 * 23 21 19 25 25 O 1.21482 * 125.67212 * 180.02562 * 24 23 21 26 26 H 1.09001 * 109.47175 * 89.99910 * 1 2 3 27 27 H 1.08995 * 109.47117 * 210.00221 * 1 2 3 28 28 H 1.09003 * 109.47036 * 330.00333 * 1 2 3 29 29 H 1.08996 * 109.46804 * 210.00286 * 3 2 1 30 30 H 1.09003 * 109.46720 * 329.99956 * 3 2 1 31 31 H 0.96997 * 119.99576 * 180.02562 * 7 6 4 32 32 H 0.96993 * 120.00200 * 354.69917 * 14 12 2 33 33 H 1.08003 * 119.79928 * 359.95996 * 16 15 14 34 34 H 1.08002 * 120.08538 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.17140 * 180.26560 * 20 19 18 36 36 H 0.97000 * 124.45413 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1261 2.8780 1.6727 7 7 3.5525 3.6186 0.6731 8 14 3.4380 3.4169 3.4338 9 1 4.2413 2.3821 4.1332 10 1 4.1794 4.7036 3.4338 11 1 2.1407 3.5937 4.1346 12 6 2.1389 -1.1672 0.0056 13 8 3.3547 -1.1672 0.0061 14 7 1.4649 -2.3343 0.0118 15 6 2.1576 -3.5399 -0.0939 16 6 1.6849 -4.6693 0.5636 17 6 2.3624 -5.8706 0.4661 18 6 3.5216 -5.9498 -0.2932 19 6 4.0045 -4.8052 -0.9622 20 6 3.3184 -3.6084 -0.8637 21 6 5.2335 -5.2355 -1.6628 22 8 5.9411 -4.5295 -2.3526 23 7 5.4353 -6.5411 -1.4086 24 6 4.4714 -7.0335 -0.6102 25 8 4.3955 -8.1799 -0.2154 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0284 -0.5139 31 1 4.0294 4.4445 0.8503 32 1 0.4981 -2.3357 0.0897 33 1 0.7829 -4.6082 1.1544 34 1 1.9902 -6.7452 0.9789 35 1 3.6817 -2.7306 -1.3773 36 1 6.1783 -7.0593 -1.7555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049211035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:59 Heat of formation + Delta-G solvation = -32.412313 kcal Electronic energy + Delta-G solvation = -23708.228674 eV Core-core repulsion = 19966.067632 eV Total energy + Delta-G solvation = -3742.161042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31956 -40.36456 -38.74431 -38.24725 -35.95491 -35.11131 -34.46443 -32.63636 -31.32791 -29.99687 -27.83406 -26.08551 -25.12135 -24.52211 -23.02017 -21.88416 -20.71744 -19.72921 -18.40170 -18.04216 -17.40506 -16.90682 -16.61884 -16.52075 -15.77681 -15.35043 -15.18462 -14.78389 -14.63592 -14.16852 -14.13355 -14.04537 -13.44396 -13.16851 -13.08400 -12.64742 -12.26850 -12.11844 -12.03539 -11.28728 -11.02679 -10.85414 -10.66062 -10.58896 -10.57236 -10.43085 -10.23457 -9.75215 -9.61812 -9.31528 -8.49696 -8.38190 -7.81457 -6.11072 -4.16526 -0.09111 0.87681 1.82677 2.42995 2.81218 2.82152 3.27836 3.32287 3.33313 3.37137 3.55638 3.75244 4.16360 4.24481 4.41535 4.48664 4.80057 4.99531 5.05699 5.23426 5.32540 5.52951 5.63175 5.70631 5.78404 5.86597 5.96072 6.01450 6.14472 6.30589 6.55726 6.74158 7.02315 7.18347 7.32560 7.46968 7.58939 7.84818 8.13088 8.32397 8.81254 8.98525 9.48897 10.96920 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.003386 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.389850 B = 8266.787547 C = 8695.890369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.532 4.532 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.693 3.307 13 O -0.560 6.560 14 N -0.692 5.692 15 C 0.220 3.780 16 C -0.144 4.144 17 C -0.013 4.013 18 C -0.184 4.184 19 C -0.118 4.118 20 C -0.048 4.048 21 C 0.579 3.421 22 O -0.458 6.458 23 N -0.682 5.682 24 C 0.585 3.415 25 O -0.477 6.477 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 -17.894 -3.057 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.341 5.341 3 C 0.140 3.860 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.395 3.605 13 O -0.435 6.435 14 N -0.341 5.341 15 C 0.120 3.880 16 C -0.165 4.165 17 C -0.033 4.033 18 C -0.189 4.189 19 C -0.123 4.123 20 C -0.069 4.069 21 C 0.366 3.634 22 O -0.328 6.328 23 N -0.349 5.349 24 C 0.374 3.626 25 O -0.349 6.349 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.246 0.754 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -6.119 -17.661 -3.249 18.971 hybrid contribution 0.035 0.218 0.961 0.986 sum -6.084 -17.443 -2.288 18.614 Atomic orbital electron populations 1.21647 0.81367 1.02558 1.00710 1.47574 1.05951 1.06253 1.74312 1.19322 0.92456 0.76578 0.97682 1.21382 1.37089 1.06427 0.92205 0.92496 1.24923 0.95202 0.96317 0.97519 1.69912 1.38057 1.14350 1.30846 0.86542 0.78374 0.77890 0.84520 1.20157 1.21105 1.20250 1.15969 0.85638 0.80061 0.78843 1.90959 1.11117 1.85296 1.56126 1.43071 1.10542 1.03600 1.76865 1.17637 0.92401 0.85520 0.92403 1.21054 1.02804 0.91837 1.00843 1.20411 0.91158 0.97558 0.94148 1.20289 0.99128 0.94086 1.05363 1.20199 0.96409 0.94856 1.00824 1.20860 0.93384 0.96925 0.95776 1.18341 0.84701 0.81041 0.79276 1.90873 1.49889 1.57060 1.34959 1.44442 1.28656 1.12901 1.48859 1.18230 0.80767 0.87115 0.76469 1.90829 1.74152 1.18736 1.51205 0.93266 0.93112 0.90011 0.93477 0.94481 0.92522 0.75352 0.83891 0.83884 0.82461 0.73113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.26 59.85 0.61 1.70 16 2 N -0.61 -11.72 2.86 -188.74 -0.54 -12.26 16 3 C 0.26 6.39 5.16 -5.19 -0.03 6.37 16 4 C -0.53 -14.51 9.38 -34.44 -0.32 -14.83 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.69 13.25 8.00 -86.92 -0.70 12.55 16 13 O -0.56 -13.22 13.61 5.29 0.07 -13.15 16 14 N -0.69 -9.24 5.20 -14.18 -0.07 -9.31 16 15 C 0.22 2.79 6.27 -83.67 -0.52 2.27 16 16 C -0.14 -1.33 9.94 -39.30 -0.39 -1.72 16 17 C -0.01 -0.12 10.08 -39.36 -0.40 -0.52 16 18 C -0.18 -2.09 6.40 -104.81 -0.67 -2.76 16 19 C -0.12 -1.57 6.40 -104.85 -0.67 -2.24 16 20 C -0.05 -0.71 8.67 -39.11 -0.34 -1.05 16 21 C 0.58 7.66 8.46 -12.43 -0.11 7.56 16 22 O -0.46 -7.44 18.04 5.41 0.10 -7.34 16 23 N -0.68 -7.08 5.76 -13.31 -0.08 -7.15 16 24 C 0.58 6.72 8.44 -12.59 -0.11 6.61 16 25 O -0.48 -6.35 18.04 5.38 0.10 -6.25 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.50 6.28 -51.93 -0.33 0.17 16 28 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.41 3.90 6.50 -40.82 -0.27 3.63 16 33 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.16 2.72 6.44 -52.49 -0.34 2.38 16 36 H 0.43 3.25 8.96 -40.82 -0.37 2.89 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -34.90 322.70 -6.91 -41.81 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.33 Total: 1.97 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: -3.73 Total: 15.59 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.05 Total: -53.85 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.27 Total: -26.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.90 -6.91 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.401 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds