Wall clock time and date at job start Tue Mar 31 2020 03:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47423 * 300.00003 * 3 2 1 6 6 H 1.48510 * 109.47166 * 59.99920 * 3 2 1 7 7 C 1.37876 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00171 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47221 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 N 1.46497 * 109.47128 * 180.02562 * 14 12 11 16 16 N 1.39736 * 119.95659 * 269.72117 * 15 14 12 17 17 N 1.28348 * 122.95523 * 179.75125 * 16 15 14 18 18 C 1.35631 * 121.96565 * 0.50725 * 17 16 15 19 19 C 1.39731 * 121.33357 * 179.70575 * 18 17 16 20 20 C 1.37642 * 119.74261 * 180.02562 * 19 18 17 21 21 C 1.38885 * 120.80366 * 359.97438 * 20 19 18 22 22 C 1.37747 * 120.53858 * 0.02562 * 21 20 19 23 23 C 1.39378 * 119.56629 * 359.97438 * 22 21 20 24 24 C 1.35400 * 119.95973 * 90.00098 * 15 14 12 25 25 O 1.21732 * 121.31498 * 359.97438 * 24 15 14 26 26 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46835 * 59.99792 * 9 7 2 28 28 H 1.08999 * 109.47176 * 300.00301 * 9 7 2 29 29 H 1.08996 * 109.47090 * 59.99931 * 10 9 7 30 30 H 1.08999 * 109.47084 * 300.00104 * 10 9 7 31 31 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 32 32 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 33 33 H 1.08001 * 120.13141 * 0.05191 * 19 18 17 34 34 H 1.07992 * 119.60177 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.72873 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.21491 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 8 1.5192 -4.9195 0.0033 12 6 2.2503 -6.0453 0.0036 13 8 3.4568 -5.9821 0.0040 14 6 1.5661 -7.3881 0.0048 15 7 2.5750 -8.4502 0.0056 16 7 3.0513 -8.9612 -1.2046 17 7 3.9372 -9.8875 -1.2711 18 6 4.4729 -10.4498 -0.1591 19 6 5.4323 -11.4619 -0.2468 20 6 5.9539 -12.0098 0.9031 21 6 5.5387 -11.5688 2.1529 22 6 4.5943 -10.5725 2.2654 23 6 4.0535 -10.0042 1.1133 24 6 3.0407 -8.9395 1.1791 25 8 2.6381 -8.5141 2.2463 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8873 31 1 0.9436 -7.4779 0.8951 32 1 0.9429 -7.4791 -0.8848 33 1 5.7637 -11.8125 -1.2131 34 1 6.6956 -12.7916 0.8326 35 1 5.9598 -12.0107 3.0438 36 1 4.2749 -10.2338 3.2399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053922321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:00 Heat of formation + Delta-G solvation = -26.624130 kcal Electronic energy + Delta-G solvation = -23215.615526 eV Core-core repulsion = 19473.705478 eV Total energy + Delta-G solvation = -3741.910048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74037 -40.09621 -38.90320 -38.09579 -36.30967 -34.72557 -33.37914 -32.06615 -31.44974 -30.50881 -29.01339 -25.91155 -25.27346 -24.49857 -22.74122 -21.57550 -20.73003 -20.02459 -19.25246 -17.87022 -17.43641 -16.59950 -16.31890 -16.23612 -15.96211 -15.67688 -15.45994 -15.17429 -14.52868 -14.50663 -14.06490 -13.79287 -13.21194 -13.18680 -12.73433 -12.69068 -12.60893 -12.38576 -12.27360 -11.28515 -11.10025 -11.04579 -10.91351 -10.80947 -10.68673 -10.51992 -10.22429 -9.77386 -9.71244 -9.66529 -9.31101 -8.91758 -8.46239 -6.12068 -4.16454 -0.47219 0.21730 1.39082 1.44340 2.12906 2.36497 3.00682 3.21660 3.26918 3.32491 3.34822 3.39965 3.53243 4.05997 4.23455 4.37484 4.55729 4.59324 4.73409 4.82224 4.95486 4.97106 5.21332 5.24695 5.30515 5.44195 5.45791 5.72260 5.82251 6.02216 6.04489 6.10810 6.58792 6.84668 7.13673 7.52365 7.59412 7.82413 7.83629 8.03889 8.21470 8.89062 9.48087 10.99452 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.002518 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.439576 B =11119.060385 C =11206.013089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.445 3.555 13 O -0.509 6.509 14 C 0.129 3.871 15 N -0.444 5.444 16 N 0.099 4.901 17 N -0.200 5.200 18 C 0.062 3.938 19 C -0.070 4.070 20 C -0.085 4.085 21 C -0.103 4.103 22 C -0.050 4.050 23 C -0.145 4.145 24 C 0.534 3.466 25 O -0.495 6.495 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -27.714 1.127 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.265 6.265 12 C 0.286 3.714 13 O -0.398 6.398 14 C 0.006 3.994 15 N -0.270 5.270 16 N 0.113 4.887 17 N -0.091 5.091 18 C -0.047 4.047 19 C -0.093 4.093 20 C -0.104 4.104 21 C -0.124 4.124 22 C -0.070 4.070 23 C -0.156 4.156 24 C 0.324 3.676 25 O -0.366 6.366 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.944 -27.054 0.651 28.204 hybrid contribution 0.780 0.982 1.143 1.697 sum 8.724 -26.072 1.793 27.552 Atomic orbital electron populations 1.69984 1.06078 1.26926 1.49789 1.24983 0.94934 0.99412 0.94832 0.86408 0.80041 0.83099 0.77726 1.19611 1.20779 1.20805 1.21002 0.93210 0.90052 1.52181 0.92225 1.19193 0.94171 0.88881 0.99022 1.23729 0.96489 0.78257 1.01118 1.86505 1.42132 1.15545 1.82355 1.23492 0.86867 0.87577 0.73488 1.90666 1.15655 1.88114 1.45325 1.21160 0.88547 0.80616 1.09106 1.50643 1.38130 1.33609 1.04572 1.80287 1.02431 1.01740 1.04216 1.73896 1.05109 1.04899 1.25200 1.19634 0.98742 0.98207 0.88166 1.21046 0.94056 0.93778 1.00376 1.21419 0.98462 0.98828 0.91734 1.21442 0.96247 0.96137 0.98540 1.21158 0.94040 0.93861 0.97920 1.20539 1.00507 0.99263 0.95245 1.18710 0.82224 0.82793 0.83891 1.90918 1.58123 1.59941 1.27568 0.92725 0.95167 0.95230 0.92215 0.92100 0.83822 0.83718 0.83202 0.83944 0.84050 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.72 5.40 37.16 0.20 1.93 16 11 O -0.35 -6.94 10.22 -39.27 -0.40 -7.34 16 12 C 0.45 7.93 8.03 36.01 0.29 8.21 16 13 O -0.51 -10.66 16.18 -18.75 -0.30 -10.97 16 14 C 0.13 1.65 6.33 -5.20 -0.03 1.61 16 15 N -0.44 -6.18 3.01 -62.49 -0.19 -6.37 16 16 N 0.10 1.32 12.76 60.35 0.77 2.09 16 17 N -0.20 -2.44 11.61 32.27 0.37 -2.06 16 18 C 0.06 0.66 6.72 -84.51 -0.57 0.10 16 19 C -0.07 -0.49 10.02 -39.24 -0.39 -0.88 16 20 C -0.09 -0.43 10.00 -39.56 -0.40 -0.82 16 21 C -0.10 -0.59 10.02 -39.52 -0.40 -0.99 16 22 C -0.05 -0.45 9.67 -39.34 -0.38 -0.83 16 23 C -0.15 -1.73 5.90 -104.76 -0.62 -2.34 16 24 C 0.53 7.77 7.75 -12.39 -0.10 7.67 16 25 O -0.49 -8.20 16.33 5.16 0.08 -8.12 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 30 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.14 1.59 7.48 -51.93 -0.39 1.21 16 32 H 0.15 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.25 8.06 -52.49 -0.42 -0.18 16 35 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 36 H 0.15 1.24 7.81 -52.48 -0.41 0.83 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -35.36 330.23 -5.64 -41.00 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -3.72 Total: -4.63 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.95 Total: 0.55 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 1.69 Total: -32.00 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.62 Total: -26.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.36 -5.64 -41.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053922321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.375 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds