Wall clock time and date at job start Tue Mar 31 2020 03:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47423 * 300.00003 * 3 2 1 6 6 H 1.48510 * 109.47166 * 59.99920 * 3 2 1 7 7 C 1.37876 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00171 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47221 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 N 1.46497 * 109.47128 * 180.02562 * 14 12 11 16 16 N 1.39736 * 119.95659 * 269.72117 * 15 14 12 17 17 N 1.28348 * 122.95523 * 179.75125 * 16 15 14 18 18 C 1.35631 * 121.96565 * 0.50725 * 17 16 15 19 19 C 1.39731 * 121.33357 * 179.70575 * 18 17 16 20 20 C 1.37642 * 119.74261 * 180.02562 * 19 18 17 21 21 C 1.38885 * 120.80366 * 359.97438 * 20 19 18 22 22 C 1.37747 * 120.53858 * 0.02562 * 21 20 19 23 23 C 1.39378 * 119.56629 * 359.97438 * 22 21 20 24 24 C 1.35400 * 119.95973 * 90.00098 * 15 14 12 25 25 O 1.21732 * 121.31498 * 359.97438 * 24 15 14 26 26 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46835 * 59.99792 * 9 7 2 28 28 H 1.08999 * 109.47176 * 300.00301 * 9 7 2 29 29 H 1.08996 * 109.47090 * 59.99931 * 10 9 7 30 30 H 1.08999 * 109.47084 * 300.00104 * 10 9 7 31 31 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 32 32 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 33 33 H 1.08001 * 120.13141 * 0.05191 * 19 18 17 34 34 H 1.07992 * 119.60177 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.72873 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.21491 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 8 1.5192 -4.9195 0.0033 12 6 2.2503 -6.0453 0.0036 13 8 3.4568 -5.9821 0.0040 14 6 1.5661 -7.3881 0.0048 15 7 2.5750 -8.4502 0.0056 16 7 3.0513 -8.9612 -1.2046 17 7 3.9372 -9.8875 -1.2711 18 6 4.4729 -10.4498 -0.1591 19 6 5.4323 -11.4619 -0.2468 20 6 5.9539 -12.0098 0.9031 21 6 5.5387 -11.5688 2.1529 22 6 4.5943 -10.5725 2.2654 23 6 4.0535 -10.0042 1.1133 24 6 3.0407 -8.9395 1.1791 25 8 2.6381 -8.5141 2.2463 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8873 31 1 0.9436 -7.4779 0.8951 32 1 0.9429 -7.4791 -0.8848 33 1 5.7637 -11.8125 -1.2131 34 1 6.6956 -12.7916 0.8326 35 1 5.9598 -12.0107 3.0438 36 1 4.2749 -10.2338 3.2399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053922321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:00 Heat of formation + Delta-G solvation = -50.490152 kcal Electronic energy + Delta-G solvation = -23216.650435 eV Core-core repulsion = 19473.705478 eV Total energy + Delta-G solvation = -3742.944956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.66300 -41.53242 -39.82714 -38.95547 -37.89309 -35.74250 -35.49632 -32.80983 -32.44015 -32.15720 -30.17182 -27.17536 -26.64382 -25.57388 -23.51776 -23.24407 -22.38796 -20.83956 -20.08569 -19.35911 -18.49953 -18.39454 -17.79483 -17.60947 -17.05792 -16.69740 -16.45191 -16.27130 -16.02424 -15.39484 -15.17484 -15.05471 -14.56781 -14.41970 -14.05864 -13.84502 -13.72358 -13.25534 -13.17996 -13.09565 -12.98784 -12.66477 -12.63898 -12.16813 -11.87060 -11.75928 -11.59209 -11.51719 -11.48012 -11.22458 -10.64637 -10.39672 -9.71174 -8.30077 -6.43413 -1.26081 -0.48412 0.42057 0.66684 0.92410 1.25905 1.39285 1.39670 1.53145 1.71367 2.36593 2.37348 2.59329 2.80459 3.04288 3.36841 3.45047 3.57736 3.88706 4.01901 4.05299 4.10558 4.13869 4.15285 4.19500 4.43484 4.59732 4.61880 4.82326 4.86222 5.14715 5.16830 5.21269 5.42076 5.42301 5.60321 5.69135 6.02436 6.12150 6.48547 6.69738 6.92316 7.26310 8.82712 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.002518 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.439576 B =11119.060385 C =11206.013089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.092 3.908 11 O -0.353 6.353 12 C 0.445 3.555 13 O -0.543 6.543 14 C 0.136 3.864 15 N -0.452 5.452 16 N 0.070 4.930 17 N -0.191 5.191 18 C 0.029 3.971 19 C -0.059 4.059 20 C -0.068 4.068 21 C -0.080 4.080 22 C -0.068 4.068 23 C -0.171 4.171 24 C 0.520 3.480 25 O -0.533 6.533 26 H 0.269 0.731 27 H 0.012 0.988 28 H 0.008 0.992 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.176 0.824 34 H 0.191 0.809 35 H 0.181 0.819 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.503 -29.985 1.164 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.268 6.268 12 C 0.288 3.712 13 O -0.433 6.433 14 C 0.013 3.987 15 N -0.276 5.276 16 N 0.085 4.915 17 N -0.082 5.082 18 C -0.080 4.080 19 C -0.082 4.082 20 C -0.087 4.087 21 C -0.100 4.100 22 C -0.088 4.088 23 C -0.181 4.181 24 C 0.313 3.687 25 O -0.407 6.407 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.178 0.822 32 H 0.201 0.799 33 H 0.193 0.807 34 H 0.208 0.792 35 H 0.198 0.802 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.262 -29.349 0.649 31.098 hybrid contribution 0.206 1.423 1.173 1.856 sum 10.468 -27.925 1.822 29.878 Atomic orbital electron populations 1.70095 1.07734 1.28299 1.50255 1.25955 0.95881 1.03373 0.94009 0.85267 0.78772 0.78059 0.78146 1.18850 1.19803 1.19978 1.21374 0.93600 0.91274 1.52681 0.91963 1.18995 0.94272 0.90270 0.97041 1.23225 0.95235 0.78820 1.00879 1.86492 1.42072 1.15454 1.82811 1.24519 0.86680 0.88258 0.71777 1.90642 1.17269 1.88475 1.46907 1.21394 0.88245 0.77416 1.11667 1.50684 1.38509 1.33608 1.04805 1.80284 1.04207 1.03364 1.03672 1.73737 1.04074 1.04001 1.26376 1.19950 1.00766 1.00132 0.87176 1.21534 0.92147 0.91910 1.02638 1.22007 0.97849 0.98505 0.90316 1.21972 0.93675 0.93694 1.00639 1.21368 0.95305 0.95156 0.96941 1.20642 1.00981 0.99587 0.96896 1.19295 0.82530 0.83308 0.83595 1.90870 1.59706 1.61558 1.28615 0.92230 0.96914 0.97351 0.92707 0.91993 0.82237 0.79878 0.80661 0.79193 0.80165 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.77 13.29 21.45 0.28 -55.48 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C 0.09 4.29 5.40 71.98 0.39 4.67 16 11 O -0.35 -14.47 10.22 -51.46 -0.53 -15.00 16 12 C 0.44 16.36 8.03 71.24 0.57 16.93 16 13 O -0.54 -23.60 16.18 21.98 0.36 -23.25 16 14 C 0.14 3.54 6.33 85.63 0.54 4.08 16 15 N -0.45 -13.02 3.01 -469.47 -1.41 -14.44 16 16 N 0.07 1.91 12.76 37.02 0.47 2.38 16 17 N -0.19 -4.64 11.61 -51.82 -0.60 -5.24 16 18 C 0.03 0.61 6.72 39.64 0.27 0.87 16 19 C -0.06 -0.63 10.02 22.49 0.23 -0.41 16 20 C -0.07 -0.33 10.00 22.28 0.22 -0.11 16 21 C -0.08 -0.59 10.02 22.31 0.22 -0.36 16 22 C -0.07 -1.14 9.67 22.43 0.22 -0.92 16 23 C -0.17 -4.08 5.90 -19.95 -0.12 -4.19 16 24 C 0.52 15.87 7.75 86.47 0.67 16.54 16 25 O -0.53 -18.71 16.33 -4.45 -0.07 -18.79 16 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 2.59 8.13 -2.39 -0.02 2.57 16 30 H 0.06 2.86 8.13 -2.39 -0.02 2.84 16 31 H 0.16 3.64 7.48 -2.38 -0.02 3.62 16 32 H 0.18 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.19 -0.75 8.06 -2.91 -0.02 -0.78 16 35 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16 36 H 0.14 2.43 7.81 -2.91 -0.02 2.40 16 Total: -1.00 -80.97 330.23 5.71 -75.26 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: 1.12 Total: 0.08 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.07 Total: 8.17 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.26 Total: -72.78 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.24 Total: -57.03 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -80.97 5.71 -75.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053922321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.766 kcal (2) G-P(sol) polarization free energy of solvation -80.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds