Wall clock time and date at job start Tue Mar 31 2020 03:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 119.99701 * 2 1 4 4 H 1.48502 * 109.47286 * 269.99794 * 3 2 1 5 5 H 1.48499 * 109.47604 * 29.99865 * 3 2 1 6 6 H 1.48501 * 109.46910 * 150.00456 * 3 2 1 7 7 C 1.38946 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00218 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99982 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00135 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00263 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47143 * 180.02562 * 12 10 9 14 14 N 1.46501 * 109.46997 * 179.97438 * 13 12 10 15 15 C 1.34421 * 119.68137 * 270.88882 * 14 13 12 16 16 O 1.21574 * 118.59246 * 359.41006 * 15 14 13 17 17 N 1.34218 * 122.81247 * 180.02562 * 15 14 13 18 18 H 0.97002 * 119.36178 * 179.38609 * 17 15 14 19 19 C 1.35071 * 121.27229 * 359.41705 * 17 15 14 20 20 O 1.21591 * 120.86445 * 179.97438 * 19 17 15 21 21 C 1.47397 * 118.27619 * 359.96834 * 19 17 15 22 22 C 1.39288 * 121.73081 * 180.02562 * 21 19 17 23 23 C 1.37916 * 119.49967 * 179.70393 * 22 21 19 24 24 C 1.38650 * 120.41415 * 0.25995 * 23 22 21 25 25 C 1.38062 * 120.65275 * 0.04026 * 24 23 22 26 26 C 1.38650 * 119.75361 * 359.97438 * 25 24 23 27 27 H 0.96997 * 119.99823 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00364 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47311 * 59.99863 * 12 10 9 30 30 H 1.09005 * 109.47044 * 299.99851 * 12 10 9 31 31 H 1.08994 * 109.47804 * 59.99950 * 13 12 10 32 32 H 1.09010 * 109.47038 * 299.99764 * 13 12 10 33 33 H 1.08002 * 120.25402 * 359.97438 * 22 21 19 34 34 H 1.07996 * 119.78739 * 180.28113 * 23 22 21 35 35 H 1.08004 * 119.67309 * 180.02562 * 24 23 22 36 36 H 1.07992 * 120.12106 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 6 2.2381 -6.0258 0.0016 14 7 1.5056 -7.2945 0.0028 15 6 1.1575 -7.8611 1.1711 16 8 1.4731 -7.3042 2.2046 17 7 0.4869 -9.0213 1.2455 18 1 0.2690 -9.3898 2.1159 19 6 0.1102 -9.6861 0.1316 20 8 -0.4967 -10.7370 0.2077 21 6 0.4538 -9.1046 -1.1784 22 6 0.1004 -9.7288 -2.3724 23 6 0.4401 -9.1406 -3.5727 24 6 1.1328 -7.9397 -3.5947 25 6 1.4943 -7.3140 -2.4183 26 6 1.1618 -7.8905 -1.2020 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3906 0.0005 29 1 0.6168 -4.9209 -0.8886 30 1 0.6175 -4.9205 0.8914 31 1 2.8648 -5.9678 0.8915 32 1 2.8648 -5.9685 -0.8885 33 1 -0.4393 -10.6642 -2.3584 34 1 0.1644 -9.6182 -4.5013 35 1 1.3923 -7.4894 -4.5415 36 1 2.0341 -6.3791 -2.4455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058202492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:57 Heat of formation + Delta-G solvation = -68.012450 kcal Electronic energy + Delta-G solvation = -23959.030622 eV Core-core repulsion = 20215.325842 eV Total energy + Delta-G solvation = -3743.704780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.35586 -39.41794 -39.08335 -38.25611 -36.12134 -35.17311 -34.05492 -31.82494 -31.41520 -31.00255 -29.67808 -25.80241 -25.03937 -24.14534 -23.55744 -21.59910 -19.79630 -19.73998 -19.26234 -17.96972 -17.95824 -16.90483 -16.46494 -16.14273 -15.64806 -15.35224 -15.03746 -14.87897 -14.71718 -14.45498 -14.14501 -14.00825 -13.97544 -13.54881 -12.64856 -12.50599 -12.41783 -12.09505 -11.66071 -11.58489 -11.16419 -11.03744 -10.88758 -10.69891 -10.56620 -10.50944 -10.44305 -10.28004 -9.59906 -9.46356 -8.59800 -8.32783 -8.06329 -6.49193 -3.90718 0.37907 0.88248 1.85682 1.91925 2.72602 2.80277 3.12879 3.22914 3.28677 3.56330 3.78632 3.92798 4.11326 4.28638 4.57062 4.73815 4.89846 4.94180 4.97300 5.11371 5.20665 5.24718 5.44401 5.51906 5.64364 5.68995 5.77508 5.97809 6.03805 6.10869 6.18475 6.25235 6.34589 6.41896 7.08114 7.17970 7.48350 7.78706 7.96180 8.49469 9.08278 9.43922 9.93255 10.68059 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.003386 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.214874 B = 8268.094638 C = 8930.794185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.555 5.555 10 C 0.443 3.557 11 O -0.598 6.598 12 C -0.148 4.148 13 C 0.133 3.867 14 N -0.536 5.536 15 C 0.701 3.299 16 O -0.532 6.532 17 N -0.662 5.662 18 H 0.431 0.569 19 C 0.569 3.431 20 O -0.503 6.503 21 C -0.205 4.205 22 C -0.016 4.016 23 C -0.161 4.161 24 C -0.043 4.043 25 C -0.164 4.164 26 C 0.208 3.792 27 H 0.273 0.727 28 H 0.394 0.606 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 -17.535 -6.827 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.229 3.771 11 O -0.484 6.484 12 C -0.190 4.190 13 C 0.012 3.988 14 N -0.258 5.258 15 C 0.402 3.598 16 O -0.405 6.405 17 N -0.330 5.330 18 H 0.273 0.727 19 C 0.360 3.640 20 O -0.376 6.376 21 C -0.212 4.212 22 C -0.035 4.035 23 C -0.181 4.181 24 C -0.062 4.062 25 C -0.185 4.185 26 C 0.108 3.892 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.070 -17.480 -6.229 18.587 hybrid contribution -0.472 0.768 0.410 0.990 sum -1.542 -16.712 -5.819 17.763 Atomic orbital electron populations 1.69616 1.06007 1.28374 1.49896 1.25299 0.95638 0.99865 0.96982 0.85838 0.79287 0.80632 0.78436 1.20320 1.20858 1.19311 1.19739 0.93457 0.82153 1.47945 0.87723 1.41874 1.09325 1.04634 1.63170 1.19508 0.88050 0.84541 0.85023 1.90533 1.13714 1.87323 1.56862 1.21811 0.99238 0.94125 1.03802 1.21645 0.93346 0.77182 1.06581 1.45018 1.53960 1.24174 1.02662 1.15622 0.79130 0.80660 0.84364 1.91097 1.56233 1.61786 1.31340 1.44357 1.54083 1.22226 1.12368 0.72679 1.18426 0.77677 0.83675 0.84192 1.90855 1.38604 1.21307 1.86884 1.19411 1.09976 0.97732 0.94037 1.20985 0.94188 0.98397 0.89926 1.21143 1.02048 0.96907 0.97958 1.21330 0.93137 0.93684 0.98046 1.20920 1.05119 1.02599 0.89875 1.18136 0.93181 0.91198 0.86649 0.91716 0.77300 0.89976 0.89639 0.87138 0.87818 0.84007 0.84752 0.84458 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.44 9.92 7.78 -10.98 -0.09 9.83 16 11 O -0.60 -15.18 15.56 5.55 0.09 -15.09 16 12 C -0.15 -2.47 6.02 -27.88 -0.17 -2.64 16 13 C 0.13 1.98 4.13 -4.04 -0.02 1.96 16 14 N -0.54 -7.09 2.66 -119.00 -0.32 -7.40 16 15 C 0.70 9.86 8.33 -87.74 -0.73 9.13 16 16 O -0.53 -9.08 16.53 5.30 0.09 -8.99 16 17 N -0.66 -7.82 5.18 -16.91 -0.09 -7.90 16 18 H 0.43 4.26 8.85 -40.82 -0.36 3.90 16 19 C 0.57 6.96 7.96 -12.40 -0.10 6.87 16 20 O -0.50 -7.00 17.41 5.29 0.09 -6.90 16 21 C -0.21 -2.29 5.88 -104.90 -0.62 -2.91 16 22 C -0.02 -0.14 9.67 -39.31 -0.38 -0.52 16 23 C -0.16 -1.17 10.03 -39.55 -0.40 -1.56 16 24 C -0.04 -0.33 10.02 -39.49 -0.40 -0.72 16 25 C -0.16 -1.61 9.23 -39.49 -0.36 -1.98 16 26 C 0.21 2.40 6.53 -83.71 -0.55 1.85 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 28 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.11 1.86 7.31 -51.93 -0.38 1.48 16 32 H 0.10 1.41 6.23 -51.92 -0.32 1.09 16 33 H 0.14 1.11 7.80 -52.49 -0.41 0.70 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 36 H 0.15 1.42 6.28 -52.49 -0.33 1.09 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -32.58 319.52 -7.05 -39.63 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.33 Total: 11.83 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -4.04 Total: 11.48 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.26 Total: -52.29 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: 0.27 Total: -30.99 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.58 -7.05 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058202492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.381 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds