Wall clock time and date at job start Tue Mar 31 2020 04:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47123 * 2 1 4 4 C 1.34219 * 119.35483 * 269.97652 * 3 2 1 5 5 O 1.21573 * 118.59002 * 0.02979 * 4 3 2 6 6 N 1.34397 * 122.81360 * 180.02562 * 4 3 2 7 7 H 0.97004 * 119.67156 * 179.97438 * 6 4 3 8 8 C 1.38800 * 120.65645 * 0.02562 * 6 4 3 9 9 C 1.38535 * 121.51740 * 179.97438 * 8 6 4 10 10 C 1.39422 * 119.50204 * 180.27749 * 9 8 6 11 11 C 1.47885 * 119.85308 * 179.74767 * 10 9 8 12 12 O 1.21580 * 119.99703 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00390 * 179.97438 * 11 10 9 14 14 C 1.36739 * 120.00071 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00508 * 359.97438 * 14 13 11 16 16 C 1.39149 * 119.99905 * 179.97438 * 14 13 11 17 17 N 1.31301 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99926 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47129 * 90.00047 * 18 16 14 20 20 H 1.48499 * 109.47370 * 210.00127 * 18 16 14 21 21 H 1.48500 * 109.47178 * 330.00250 * 18 16 14 22 22 C 1.39880 * 120.29951 * 359.49013 * 10 9 8 23 23 C 1.36705 * 120.40865 * 0.51672 * 22 10 9 24 24 C 1.39348 * 119.83704 * 359.74316 * 23 22 10 25 25 C 1.35047 * 119.35503 * 90.00215 * 3 2 1 26 26 O 1.21576 * 120.85414 * 0.02562 * 25 3 2 27 27 H 1.08997 * 109.46956 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46779 * 300.00093 * 1 2 3 29 29 H 1.08994 * 109.47037 * 60.00262 * 1 2 3 30 30 H 1.09008 * 109.47196 * 240.00208 * 2 1 3 31 31 H 1.08999 * 109.47475 * 119.99904 * 2 1 3 32 32 H 1.08002 * 120.24613 * 359.97438 * 9 8 6 33 33 H 0.96998 * 119.99973 * 359.97438 * 13 11 10 34 34 H 0.96999 * 120.00326 * 179.97438 * 17 16 14 35 35 H 1.07996 * 119.79758 * 180.25560 * 22 10 9 36 36 H 1.07994 * 120.07657 * 179.72409 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2381 2.0014 -1.1699 5 8 2.0229 1.3931 -2.2002 6 7 2.6858 3.2660 -1.2509 7 1 2.8293 3.6698 -2.1212 8 6 2.9459 3.9998 -0.1018 9 6 3.4082 5.3042 -0.1646 10 6 3.6613 6.0006 1.0165 11 6 4.1603 7.3915 0.9585 12 8 4.3494 7.9250 -0.1175 13 7 4.4054 8.0676 2.0982 14 6 4.8673 9.3534 2.0445 15 1 5.0361 9.8272 1.0888 16 6 5.1199 10.0517 3.2213 17 7 4.9142 9.4760 4.3834 18 14 5.7516 11.8081 3.1480 19 1 4.6015 12.7474 3.1301 20 1 6.5951 12.0809 4.3393 21 1 6.5603 11.9922 1.9162 22 6 3.4402 5.3914 2.2561 23 6 2.9841 4.1044 2.3231 24 6 2.7325 3.3960 1.1498 25 6 2.2391 2.0054 1.1771 26 8 2.0382 1.4357 2.2322 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.5760 5.7764 -1.1213 33 1 4.2542 7.6420 2.9566 34 1 5.0907 9.9626 5.2037 35 1 3.6350 5.9397 3.1659 36 1 2.8195 3.6378 3.2831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058209671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:55 Heat of formation + Delta-G solvation = -68.342393 kcal Electronic energy + Delta-G solvation = -23823.371961 eV Core-core repulsion = 20079.652874 eV Total energy + Delta-G solvation = -3743.719088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25894 -39.49764 -39.01819 -37.86238 -35.58122 -35.38292 -34.35776 -31.91217 -31.70220 -30.56474 -29.66425 -26.13922 -24.77418 -24.09878 -23.03196 -22.46898 -20.65179 -19.27984 -18.64895 -18.30101 -17.98833 -16.94961 -16.47883 -16.13724 -15.54554 -15.18545 -14.73125 -14.65852 -14.39450 -14.11465 -13.97983 -13.86391 -13.77337 -13.33283 -13.15784 -12.65089 -12.53546 -12.37419 -11.85599 -11.39404 -11.33404 -11.28483 -10.96449 -10.93302 -10.60983 -10.50839 -10.37419 -9.97665 -9.84806 -8.94891 -8.72907 -8.34483 -8.26049 -6.82725 -4.08883 0.47103 1.22614 1.96926 1.98895 2.70468 2.92206 3.03989 3.09449 3.14672 3.58425 3.88372 4.11703 4.22829 4.49571 4.68924 4.81165 4.89815 4.99367 5.05335 5.12217 5.25831 5.28835 5.36083 5.53829 5.60170 5.65856 5.80685 5.91792 5.99485 6.07764 6.41075 6.50365 6.57306 6.75199 7.13484 7.18036 7.33842 7.70390 7.83300 8.24097 8.80768 9.14350 9.73187 10.32574 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.034399 B = 0.003115 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.775644 B = 8985.949616 C = 9692.225514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.559 5.559 4 C 0.707 3.293 5 O -0.552 6.552 6 N -0.642 5.642 7 H 0.434 0.566 8 C 0.190 3.810 9 C -0.127 4.127 10 C -0.017 4.017 11 C 0.446 3.554 12 O -0.596 6.596 13 N -0.526 5.526 14 C -0.288 4.288 15 H 0.113 0.887 16 C 0.025 3.975 17 N -0.874 5.874 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.142 4.142 23 C -0.016 4.016 24 C -0.208 4.208 25 C 0.567 3.433 26 O -0.499 6.499 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.148 0.852 33 H 0.396 0.604 34 H 0.281 0.719 35 H 0.140 0.860 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -13.342 -3.590 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.304 5.304 4 C 0.409 3.591 5 O -0.427 6.427 6 N -0.289 5.289 7 H 0.276 0.724 8 C 0.091 3.909 9 C -0.150 4.150 10 C -0.022 4.022 11 C 0.235 3.765 12 O -0.484 6.484 13 N -0.159 5.159 14 C -0.418 4.418 15 H 0.131 0.869 16 C -0.180 4.180 17 N -0.512 5.512 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.162 4.162 23 C -0.036 4.036 24 C -0.215 4.215 25 C 0.360 3.640 26 O -0.372 6.372 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.166 0.834 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.275 -13.673 -3.956 15.179 hybrid contribution 0.276 0.845 0.251 0.924 sum -4.999 -12.827 -3.704 14.257 Atomic orbital electron populations 1.22077 0.94483 1.03067 1.02759 1.21716 0.95631 0.79150 1.04924 1.46225 1.61587 1.16582 1.05960 1.15549 0.78240 0.81342 0.84002 1.91017 1.56186 1.63376 1.32129 1.42721 1.64547 1.11796 1.09822 0.72411 1.17848 0.96142 0.91940 0.85014 1.20598 1.03150 0.91062 1.00163 1.20424 0.94067 0.95176 0.92541 1.17587 0.87982 0.85653 0.85256 1.90623 1.59767 1.69618 1.28346 1.41979 1.53269 1.13238 1.07396 1.19985 1.38335 0.88253 0.95233 0.86909 1.25520 0.96874 1.01257 0.94379 1.69549 1.44896 1.38704 0.98025 0.85705 0.78988 0.80449 0.78428 1.19861 1.20461 1.18896 1.21154 1.01943 0.95173 0.97964 1.20581 0.92975 0.93115 0.96905 1.19337 1.14443 0.94337 0.93415 1.18523 0.76271 0.86309 0.82879 1.90793 1.49781 1.67299 1.29363 0.90607 0.92005 0.91978 0.88331 0.88382 0.83392 0.76869 0.90864 0.84269 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.23 37.16 0.38 -1.16 16 2 C 0.11 1.11 5.76 -4.04 -0.02 1.09 16 3 N -0.56 -7.16 2.55 -122.04 -0.31 -7.47 16 4 C 0.71 9.37 8.33 -87.76 -0.73 8.64 16 5 O -0.55 -8.17 16.49 5.30 0.09 -8.08 16 6 N -0.64 -7.72 5.35 -14.39 -0.08 -7.80 16 7 H 0.43 4.24 8.79 -40.82 -0.36 3.88 16 8 C 0.19 2.60 6.66 -83.71 -0.56 2.04 16 9 C -0.13 -1.95 9.49 -39.03 -0.37 -2.32 16 10 C -0.02 -0.29 5.88 -104.89 -0.62 -0.91 16 11 C 0.45 9.99 7.72 -12.32 -0.10 9.90 16 12 O -0.60 -15.26 15.90 5.30 0.08 -15.17 16 13 N -0.53 -12.28 5.22 -11.83 -0.06 -12.34 16 14 C -0.29 -7.32 9.68 -15.03 -0.15 -7.47 16 15 H 0.11 2.99 7.15 -52.49 -0.38 2.62 16 16 C 0.03 0.61 5.50 -17.44 -0.10 0.52 16 17 N -0.87 -21.33 13.05 55.51 0.72 -20.61 16 18 Si 0.94 18.96 29.55 -169.99 -5.02 13.94 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.14 -2.17 9.47 -39.52 -0.37 -2.54 16 23 C -0.02 -0.23 9.60 -39.72 -0.38 -0.61 16 24 C -0.21 -2.96 5.89 -104.79 -0.62 -3.57 16 25 C 0.57 8.02 7.65 -12.33 -0.09 7.93 16 26 O -0.50 -7.76 16.16 5.30 0.09 -7.67 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.96 7.30 -51.92 -0.38 0.58 16 31 H 0.10 0.96 7.41 -51.93 -0.38 0.57 16 32 H 0.15 2.21 7.64 -52.49 -0.40 1.81 16 33 H 0.40 8.64 5.89 -40.82 -0.24 8.40 16 34 H 0.28 6.43 8.31 -40.82 -0.34 6.10 16 35 H 0.14 2.04 6.36 -52.49 -0.33 1.71 16 36 H 0.14 1.75 7.79 -52.49 -0.41 1.34 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -29.82 318.52 -6.70 -36.52 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -3.28 Total: 12.36 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -3.72 Total: 11.52 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.27 Total: -48.22 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: 0.26 Total: -30.92 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.82 -6.70 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058209671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.823 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds