Wall clock time and date at job start Tue Mar 31 2020 04:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00266 * 2 1 4 4 C 1.53005 * 109.47505 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46897 * 64.99841 * 4 3 2 6 6 C 1.46500 * 120.00120 * 274.99848 * 5 4 3 7 7 C 1.50692 * 109.47326 * 275.00482 * 6 5 4 8 8 H 1.08004 * 120.00269 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00347 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00427 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99680 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47185 * 90.00083 * 11 9 7 13 13 H 1.48504 * 109.46959 * 209.99976 * 11 9 7 14 14 H 1.48503 * 109.47022 * 330.00017 * 11 9 7 15 15 S 1.65596 * 119.99987 * 95.00273 * 5 4 3 16 16 O 1.42098 * 106.40393 * 156.45675 * 15 5 4 17 17 O 1.42102 * 106.40340 * 23.53674 * 15 5 4 18 18 C 1.76199 * 107.21928 * 269.99742 * 15 5 4 19 19 C 1.34675 * 125.98796 * 89.99975 * 18 15 5 20 20 N 1.36881 * 106.81313 * 179.97438 * 19 18 15 21 21 C 1.46506 * 126.39256 * 179.97438 * 20 19 18 22 22 C 1.35034 * 107.20901 * 0.26255 * 20 19 18 23 23 N 1.30503 * 108.70195 * 359.56520 * 22 20 19 24 24 H 1.09005 * 109.46763 * 59.99902 * 1 2 3 25 25 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47423 * 300.00216 * 1 2 3 27 27 H 1.09004 * 109.47123 * 59.99914 * 3 2 1 28 28 H 1.09002 * 109.47250 * 299.99834 * 3 2 1 29 29 H 1.08995 * 109.46863 * 304.99698 * 4 3 2 30 30 H 1.09000 * 109.46801 * 185.00171 * 4 3 2 31 31 H 1.09004 * 109.46800 * 35.00298 * 6 5 4 32 32 H 1.09003 * 109.47111 * 155.00198 * 6 5 4 33 33 H 0.96998 * 120.00126 * 179.97438 * 10 9 7 34 34 H 1.07999 * 126.59305 * 0.03563 * 19 18 15 35 35 H 1.09001 * 109.47060 * 90.00676 * 21 20 19 36 36 H 1.09004 * 109.47073 * 210.00165 * 21 20 19 37 37 H 1.09000 * 109.47212 * 330.00248 * 21 20 19 38 38 H 1.08005 * 125.65147 * 179.71017 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3757 7 6 5.3000 -1.4249 -0.8238 8 1 6.0336 -0.7425 -0.4207 9 6 5.5515 -2.7805 -0.8334 10 7 6.6849 -3.2425 -0.3522 11 14 4.2823 -3.9610 -1.5299 12 1 4.5316 -4.1562 -2.9808 13 1 4.3843 -5.2668 -0.8301 14 1 2.9222 -3.3984 -1.3326 15 16 4.4474 1.5120 -2.5244 16 8 5.3033 0.7102 -3.3267 17 8 4.8442 2.7592 -1.9710 18 6 3.0120 1.8324 -3.4947 19 6 2.1671 2.8696 -3.3394 20 7 1.1967 2.7365 -4.2956 21 6 0.0600 3.6351 -4.5115 22 6 1.4793 1.6187 -4.9985 23 7 2.5694 1.0863 -4.5177 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 3.1684 -1.3222 -0.8170 32 1 3.9138 -1.1718 -2.4265 33 1 6.8617 -4.1962 -0.3586 34 1 2.2415 3.6559 -2.6027 35 1 0.3434 4.4165 -5.2166 36 1 -0.7794 3.0688 -4.9149 37 1 -0.2298 4.0887 -3.5636 38 1 0.9004 1.2308 -5.8237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:47 Heat of formation + Delta-G solvation = -39.439055 kcal Electronic energy + Delta-G solvation = -24156.040021 eV Core-core repulsion = 20549.018228 eV Total energy + Delta-G solvation = -3607.021793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.19276 -37.89699 -36.53303 -35.40761 -35.05443 -34.29398 -32.31918 -29.98109 -29.70069 -27.43856 -27.12309 -25.83218 -22.65019 -22.28115 -21.53173 -21.38847 -18.48539 -17.69120 -17.00159 -16.72663 -16.04879 -16.03046 -15.68314 -15.59606 -15.14413 -14.74789 -14.32890 -14.25063 -13.92748 -13.55073 -13.36889 -13.17753 -12.48263 -12.28104 -12.27141 -12.01660 -11.70406 -11.44079 -11.23948 -11.09676 -11.02733 -10.84886 -10.47594 -10.19852 -10.12999 -9.98448 -9.93795 -9.50037 -9.36736 -8.95326 -8.38719 -7.97041 -5.89772 -3.86675 1.04404 1.60215 2.47419 2.70597 3.45109 3.51286 3.55080 3.79217 4.01690 4.24436 4.43352 4.51116 4.56775 4.58782 4.64631 4.90128 4.93186 5.20133 5.23743 5.39447 5.44528 5.47327 5.50440 5.56872 5.69054 5.75795 5.85305 6.16596 6.28207 6.53160 6.87322 7.13298 7.31934 7.40727 7.57622 7.76716 7.81315 8.67883 9.14341 9.71165 11.23895 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.006288 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.520825 B = 4451.895383 C = 4837.992292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.041 3.959 4 C 0.120 3.880 5 N -0.965 5.965 6 C 0.227 3.773 7 C -0.524 4.524 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.900 5.900 11 Si 0.868 3.132 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.261 1.261 15 S 2.712 3.288 16 O -0.925 6.925 17 O -0.975 6.975 18 C -0.547 4.547 19 C 0.052 3.948 20 N -0.462 5.462 21 C 0.068 3.932 22 C 0.176 3.824 23 N -0.406 5.406 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.190 0.810 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.037 15.107 -4.331 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.038 4.038 4 C -0.007 4.007 5 N -0.804 5.804 6 C 0.104 3.896 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.539 5.539 11 Si 0.695 3.305 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.186 1.186 15 S 2.795 3.205 16 O -0.915 6.915 17 O -0.965 6.965 18 C -0.756 4.756 19 C -0.088 4.088 20 N -0.143 5.143 21 C -0.074 4.074 22 C -0.109 4.109 23 N -0.122 5.122 24 H 0.049 0.951 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.207 0.793 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -17.770 14.425 -4.840 23.394 hybrid contribution -2.211 0.276 -0.386 2.261 sum -19.981 14.701 -5.226 25.351 Atomic orbital electron populations 1.22679 0.82540 1.02409 0.98884 1.88119 1.18258 1.27112 1.95074 1.23219 0.95968 0.85264 0.99320 1.21370 0.90406 0.99716 0.89205 1.57122 1.81795 1.18066 1.23379 1.19566 0.98722 0.73769 0.97537 1.21401 1.01721 0.93030 1.40223 0.90458 1.24791 0.95191 0.98007 0.94808 1.69900 1.23621 1.13794 1.46635 0.86963 0.82982 0.80724 0.79867 1.19870 1.21316 1.18552 1.01677 0.73072 0.72792 0.72927 1.93603 1.60933 1.68264 1.68684 1.93505 1.80218 1.44331 1.78461 1.34150 1.24557 1.03320 1.13605 1.22657 0.89891 1.00902 0.95310 1.45757 1.21214 1.21553 1.25786 1.22149 0.87263 0.94001 1.03991 1.25402 0.97500 0.87067 1.00924 1.70386 1.08236 1.26276 1.07337 0.95102 0.89935 0.94597 0.92773 0.94359 0.87973 0.88342 0.93184 0.95014 0.92773 0.79327 0.90054 0.89037 0.89339 0.77139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.10 9.02 -35.23 -0.32 -6.42 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.12 2.04 6.13 -4.04 -0.02 2.02 16 5 N -0.97 -20.58 2.75 -115.66 -0.32 -20.89 16 6 C 0.23 5.75 4.01 -5.20 -0.02 5.73 16 7 C -0.52 -15.56 9.94 -34.44 -0.34 -15.91 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.07 2.24 5.47 -17.82 -0.10 2.14 16 10 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 11 Si 0.87 22.51 27.47 -169.99 -4.67 17.85 16 12 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 15 S 2.71 57.19 5.80 -107.50 -0.62 56.57 16 16 O -0.93 -23.97 16.99 -57.17 -0.97 -24.95 16 17 O -0.98 -19.79 16.39 -57.17 -0.94 -20.73 16 18 C -0.55 -9.63 7.13 -17.81 -0.13 -9.76 16 19 C 0.05 0.68 10.43 -16.56 -0.17 0.50 16 20 N -0.46 -4.73 3.15 -125.99 -0.40 -5.13 16 21 C 0.07 0.31 11.18 59.85 0.67 0.97 16 22 C 0.18 2.20 12.56 -90.38 -1.14 1.06 16 23 N -0.41 -7.32 11.25 -13.86 -0.16 -7.47 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.49 7.24 -51.93 -0.38 0.11 16 29 H 0.10 1.83 8.11 -51.93 -0.42 1.41 16 30 H 0.10 1.46 6.91 -51.93 -0.36 1.10 16 31 H 0.05 1.25 5.66 -51.93 -0.29 0.96 16 32 H 0.03 0.84 7.04 -51.93 -0.37 0.48 16 33 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 34 H 0.19 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.21 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -40.60 336.11 -7.67 -48.27 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.21 Total: -3.35 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.10 Total: -61.39 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.23 Total: -52.09 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.85 kcal Atomic # 16 Polarization: 57.19 SS G_CDS: -0.62 Total: 56.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -40.60 -7.67 -48.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.834 kcal (2) G-P(sol) polarization free energy of solvation -40.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds