Wall clock time and date at job start Tue Mar 31 2020 04:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00171 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46948 * 65.00421 * 4 3 2 6 6 C 1.46496 * 120.00143 * 84.99730 * 5 4 3 7 7 C 1.50706 * 109.47106 * 84.99960 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00200 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47145 * 89.99836 * 11 9 7 13 13 H 1.48496 * 109.47547 * 210.00333 * 11 9 7 14 14 H 1.48499 * 109.47030 * 330.00237 * 11 9 7 15 15 S 1.65602 * 119.99575 * 265.00178 * 5 4 3 16 16 O 1.42094 * 106.40564 * 23.53691 * 15 5 4 17 17 O 1.42101 * 106.39758 * 156.46134 * 15 5 4 18 18 C 1.76201 * 107.21409 * 269.99554 * 15 5 4 19 19 C 1.39866 * 126.03701 * 90.03098 * 18 15 5 20 20 N 1.30841 * 108.20571 * 179.97438 * 19 18 15 21 21 N 1.40093 * 108.20092 * 0.02562 * 20 19 18 22 22 C 1.46493 * 126.03502 * 180.02562 * 21 20 19 23 23 C 1.34943 * 107.92321 * 359.75303 * 21 20 19 24 24 H 1.09003 * 109.47545 * 59.99401 * 1 2 3 25 25 H 1.09002 * 109.47533 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46481 * 299.99760 * 1 2 3 27 27 H 1.08998 * 109.47150 * 60.00333 * 3 2 1 28 28 H 1.09001 * 109.47464 * 300.00424 * 3 2 1 29 29 H 1.08994 * 109.47473 * 305.00407 * 4 3 2 30 30 H 1.09003 * 109.47077 * 185.00208 * 4 3 2 31 31 H 1.09001 * 109.47001 * 325.00251 * 6 5 4 32 32 H 1.09000 * 109.47574 * 205.00467 * 6 5 4 33 33 H 0.96999 * 120.00061 * 179.97438 * 10 9 7 34 34 H 1.08006 * 125.90286 * 359.97438 * 19 18 15 35 35 H 1.09005 * 109.47582 * 89.97045 * 22 21 20 36 36 H 1.08999 * 109.47396 * 209.97254 * 22 21 20 37 37 H 1.09000 * 109.47847 * 329.97298 * 22 21 20 38 38 H 1.08006 * 126.12495 * 180.24237 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2529 6 6 4.1808 1.3890 -2.4462 7 6 5.5681 1.9770 -2.4181 8 1 6.2308 1.7579 -1.5940 9 6 5.9912 2.7945 -3.4445 10 7 7.2021 3.3072 -3.4202 11 14 4.8452 3.1729 -4.8703 12 1 4.0535 4.3902 -4.5595 13 1 5.6446 3.4030 -6.1004 14 1 3.9263 2.0262 -5.0845 15 16 4.2412 -1.0689 -1.3193 16 8 3.4686 -1.6439 -0.2745 17 8 4.1042 -1.4424 -2.6834 18 6 5.9301 -1.3402 -0.8964 19 6 6.4311 -1.5585 0.3911 20 7 7.7268 -1.7184 0.3039 21 7 8.0918 -1.6060 -1.0440 22 6 9.4496 -1.7210 -1.5816 23 6 6.9708 -1.3791 -1.7603 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8515 0.5681 0.8408 30 1 3.9786 2.1764 0.0890 31 1 3.4455 2.1935 -2.4627 32 1 4.0652 0.7729 -3.3379 33 1 7.4999 3.8821 -4.1425 34 1 5.8490 -1.5898 1.3004 35 1 9.6533 -2.7614 -1.8350 36 1 9.5396 -1.1049 -2.4763 37 1 10.1665 -1.3823 -0.8337 38 1 6.9147 -1.2496 -2.8311 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:30 Heat of formation + Delta-G solvation = -29.810463 kcal Electronic energy + Delta-G solvation = -24087.639033 eV Core-core repulsion = 20481.034767 eV Total energy + Delta-G solvation = -3606.604266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.85504 -37.73862 -36.36552 -35.46167 -34.96651 -33.10674 -32.54817 -30.05865 -29.70609 -27.14247 -26.76159 -25.80500 -22.73672 -21.66241 -21.20039 -20.92420 -18.24953 -17.41746 -16.95969 -16.69715 -16.20059 -15.46587 -15.36454 -15.21814 -14.90770 -14.48769 -14.23844 -14.12769 -13.61901 -12.86426 -12.76427 -12.56509 -12.51711 -12.43354 -12.19989 -11.89826 -11.55210 -11.35332 -11.23275 -11.14803 -11.09858 -10.97620 -10.55985 -10.37189 -10.20254 -10.10555 -9.62547 -9.30286 -9.25137 -8.82439 -8.67710 -8.02019 -6.19046 -4.19191 1.30678 2.02353 2.67511 2.72653 3.22067 3.30958 3.36812 3.86536 4.19719 4.32545 4.58322 4.71871 4.99805 5.13521 5.19947 5.24499 5.34995 5.40650 5.46638 5.48579 5.53389 5.62013 5.67855 5.85465 5.86258 5.91051 6.00366 6.29680 6.46563 6.71924 6.85547 7.10334 7.14669 7.41303 7.52148 7.58872 7.75168 8.39633 8.86425 9.42326 10.93296 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.009015 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.380108 B = 3105.155967 C = 5221.618683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.037 3.963 4 C 0.136 3.864 5 N -0.975 5.975 6 C 0.213 3.787 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.865 3.135 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.258 1.258 15 S 2.726 3.274 16 O -0.954 6.954 17 O -0.974 6.974 18 C -0.810 4.810 19 C 0.129 3.871 20 N -0.306 5.306 21 N -0.368 5.368 22 C 0.095 3.905 23 C 0.199 3.801 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.192 0.808 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -6.222 4.944 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.042 4.042 4 C 0.009 3.991 5 N -0.812 5.812 6 C 0.089 3.911 7 C -0.578 4.578 8 H 0.098 0.902 9 C -0.128 4.128 10 N -0.535 5.535 11 Si 0.692 3.308 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.182 1.182 15 S 2.813 3.187 16 O -0.944 6.944 17 O -0.964 6.964 18 C -0.907 4.907 19 C -0.061 4.061 20 N -0.125 5.125 21 N -0.146 5.146 22 C -0.046 4.046 23 C 0.047 3.953 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.209 0.791 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.828 -7.136 5.216 9.281 hybrid contribution -0.538 1.224 -1.120 1.744 sum -3.366 -5.912 4.097 7.942 Atomic orbital electron populations 1.22700 0.82445 1.02305 0.99219 1.88157 1.18357 1.26909 1.95189 1.23138 0.95493 0.85394 1.00140 1.21119 0.91113 1.00791 0.86036 1.57159 1.80617 1.25952 1.17485 1.19591 0.97398 0.91347 0.82733 1.21504 0.98024 1.29678 1.08563 0.90239 1.24854 0.94940 0.95182 0.97788 1.69899 1.17515 1.32880 1.33175 0.86997 0.81615 0.79677 0.82541 1.20029 1.21019 1.18238 1.00868 0.72493 0.72279 0.73096 1.93550 1.66950 1.75884 1.58049 1.93494 1.86289 1.81907 1.34747 1.31864 1.26224 1.32043 1.00563 1.23393 0.91386 0.94669 0.96609 1.77271 1.14788 1.25461 0.94962 1.48929 1.07347 1.53199 1.05107 1.21976 0.79164 1.03071 1.00387 1.22454 0.84498 0.89498 0.98876 0.94641 0.90005 0.94662 0.92922 0.92898 0.90286 0.88413 0.95103 0.93247 0.92581 0.79111 0.90641 0.88668 0.89094 0.79238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.23 8.76 -54.44 -0.48 -6.70 16 3 C 0.04 0.56 6.28 37.16 0.23 0.79 16 4 C 0.14 2.27 5.82 -4.04 -0.02 2.25 16 5 N -0.98 -19.43 2.71 -115.66 -0.31 -19.74 16 6 C 0.21 4.80 4.50 -5.19 -0.02 4.78 16 7 C -0.54 -13.83 9.94 -34.44 -0.34 -14.17 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -25.49 13.96 55.43 0.77 -24.72 16 11 Si 0.87 20.09 27.47 -169.99 -4.67 15.43 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 15 S 2.73 54.65 5.75 -107.50 -0.62 54.03 16 16 O -0.95 -19.44 15.02 -65.29 -0.98 -20.42 16 17 O -0.97 -21.87 16.40 -57.17 -0.94 -22.80 16 18 C -0.81 -15.26 6.17 -40.01 -0.25 -15.51 16 19 C 0.13 2.26 11.81 -17.36 -0.21 2.05 16 20 N -0.31 -5.47 12.58 30.63 0.39 -5.09 16 21 N -0.37 -6.15 4.01 -68.17 -0.27 -6.43 16 22 C 0.10 1.11 11.47 59.84 0.69 1.80 16 23 C 0.20 3.61 11.23 -17.23 -0.19 3.42 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.08 1.21 7.61 -51.93 -0.40 0.81 16 30 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 31 H 0.03 0.67 7.47 -51.93 -0.39 0.28 16 32 H 0.05 1.17 5.97 -51.93 -0.31 0.86 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.19 2.74 8.06 -52.48 -0.42 2.32 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.19 3.16 8.06 -52.48 -0.42 2.73 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -34.41 337.84 -6.45 -40.85 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.33 Total: 1.68 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 0.90 Total: -11.18 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.57 Total: -55.97 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.39 Total: -49.93 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.43 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.62 Total: 54.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.41 -6.45 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.043 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds