Wall clock time and date at job start Tue Mar 31 2020 04:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99660 * 2 1 4 4 O 1.20829 * 120.00539 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00121 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47515 * 180.02562 * 5 3 2 7 7 C 1.36877 * 120.00466 * 95.41240 * 6 5 3 8 8 H 1.08001 * 120.00533 * 220.71572 * 7 6 5 9 9 C 1.39031 * 119.99636 * 40.99507 * 7 6 5 10 10 N 1.31376 * 119.99623 * 211.99822 * 9 7 6 11 11 Si 1.86798 * 120.00217 * 31.99448 * 9 7 6 12 12 H 1.48498 * 109.46907 * 86.57242 * 11 9 7 13 13 H 1.48496 * 109.46954 * 206.57403 * 11 9 7 14 14 H 1.48495 * 109.47189 * 326.57239 * 11 9 7 15 15 C 1.34784 * 119.99814 * 275.41538 * 6 5 3 16 16 O 1.21655 * 119.99901 * 355.88873 * 15 6 5 17 17 C 1.47262 * 120.00041 * 175.88920 * 15 6 5 18 18 N 1.31644 * 126.82907 * 3.59006 * 17 15 6 19 19 N 1.28389 * 111.95079 * 179.97438 * 18 17 15 20 20 H 0.97000 * 124.36043 * 180.02562 * 19 18 17 21 21 C 1.37055 * 111.26587 * 0.02562 * 19 18 17 22 22 C 1.39128 * 134.71080 * 180.02562 * 21 19 18 23 23 C 1.36698 * 119.77842 * 179.27603 * 22 21 19 24 24 C 1.38887 * 120.89452 * 0.58258 * 23 22 21 25 25 C 1.36734 * 120.51981 * 359.62958 * 24 23 22 26 26 C 1.39172 * 119.51136 * 359.97438 * 25 24 23 27 27 H 1.08992 * 109.46706 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47034 * 299.99599 * 1 2 3 29 29 H 1.08994 * 109.47310 * 59.99586 * 1 2 3 30 30 H 1.09000 * 109.46943 * 59.99908 * 5 3 2 31 31 H 1.09002 * 109.47116 * 300.00064 * 5 3 2 32 32 H 0.97004 * 120.00047 * 179.97438 * 10 9 7 33 33 H 1.07993 * 120.10931 * 359.95317 * 22 21 19 34 34 H 1.08009 * 119.54957 * 180.18622 * 23 22 21 35 35 H 1.08001 * 119.74022 * 179.60539 * 24 23 22 36 36 H 1.08000 * 120.24274 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9817 2.6799 0.0002 7 6 4.2834 3.3038 1.1805 8 1 3.9619 4.3205 1.3515 9 6 5.0089 2.6306 2.1569 10 7 4.7931 2.8847 3.4277 11 14 6.2904 1.3647 1.6620 12 1 7.5877 2.0440 1.4157 13 1 6.4514 0.3707 2.7534 14 1 5.8506 0.6733 0.4236 15 6 4.0666 3.3581 -1.1615 16 8 3.8712 2.7845 -2.2164 17 6 4.3959 4.7934 -1.1538 18 7 4.6958 5.5286 -0.1037 19 7 4.9351 6.7485 -0.4245 20 1 5.1740 7.4441 0.2079 21 6 4.8095 6.9410 -1.7756 22 6 4.9533 8.0325 -2.6263 23 6 4.7635 7.8749 -3.9709 24 6 4.4163 6.6395 -4.5021 25 6 4.2643 5.5515 -3.6880 26 6 4.4608 5.6883 -2.3171 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7811 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 5.2989 2.4147 4.1090 33 1 5.2246 8.9985 -2.2271 34 1 4.8791 8.7241 -4.6283 35 1 4.2647 6.5376 -5.5666 36 1 3.9938 4.5931 -4.1059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120673659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:19 Heat of formation + Delta-G solvation = -1.081171 kcal Electronic energy + Delta-G solvation = -24722.100975 eV Core-core repulsion = 20981.298553 eV Total energy + Delta-G solvation = -3740.802422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86942 -39.93505 -38.39607 -37.35236 -35.85713 -34.83184 -32.08480 -32.04425 -29.80123 -29.74227 -28.57487 -26.56587 -25.09539 -23.15793 -22.57576 -21.91901 -20.65429 -19.07062 -18.02889 -17.28244 -17.02873 -16.94888 -16.09276 -15.80469 -15.34418 -15.15117 -14.97019 -14.86868 -14.17093 -13.76231 -13.66338 -13.42871 -13.01549 -12.87721 -12.56317 -12.32664 -11.83924 -11.75560 -11.74149 -11.42035 -11.06342 -10.92631 -10.75156 -10.35865 -10.31573 -9.84046 -9.76436 -9.63834 -9.38213 -8.84041 -8.38896 -7.92751 -7.64882 -6.59715 -4.06894 1.27877 1.70258 2.50349 2.90206 3.04864 3.15313 3.19861 3.26233 3.29209 3.94326 4.03543 4.17767 4.34578 4.80925 4.86578 5.17939 5.18907 5.24371 5.39873 5.47853 5.48567 5.58038 5.67655 5.79810 5.82028 5.92021 6.00520 6.18256 6.26112 6.55248 6.75730 6.86048 6.87799 7.11154 7.14790 7.48648 7.91483 8.37670 8.46026 8.49038 8.90752 9.24085 9.51122 10.49364 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.005806 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.062792 B = 4821.033180 C = 5998.170454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.490 6.490 5 C 0.122 3.878 6 N -0.428 5.428 7 C -0.340 4.340 8 H 0.129 0.871 9 C 0.077 3.923 10 N -0.830 5.830 11 Si 0.845 3.155 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.564 3.436 16 O -0.586 6.586 17 C 0.034 3.966 18 N -0.163 5.163 19 N -0.433 5.433 20 H 0.441 0.559 21 C 0.059 3.941 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.156 4.156 25 C -0.038 4.038 26 C -0.112 4.112 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.277 0.723 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 3.465 -8.013 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.375 6.375 5 C -0.003 4.003 6 N -0.147 5.147 7 C -0.468 4.468 8 H 0.146 0.854 9 C -0.133 4.133 10 N -0.463 5.463 11 Si 0.669 3.331 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.179 1.179 15 C 0.355 3.645 16 O -0.469 6.469 17 C -0.137 4.137 18 N 0.009 4.991 19 N -0.151 5.151 20 H 0.284 0.716 21 C -0.055 4.055 22 C -0.148 4.148 23 C -0.114 4.114 24 C -0.175 4.175 25 C -0.058 4.058 26 C -0.120 4.120 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.882 3.382 -7.133 7.943 hybrid contribution 0.568 -0.011 -0.244 0.618 sum -0.315 3.371 -7.377 8.117 Atomic orbital electron populations 1.23129 0.77590 1.02785 1.02245 1.86517 1.22620 1.34461 1.84964 1.24796 0.92923 0.81195 0.72218 1.90627 1.66647 1.36276 1.43940 1.21419 0.86327 0.87372 1.05219 1.43157 1.56307 1.08466 1.06790 1.19483 1.35158 1.01997 0.90184 0.85380 1.25384 0.96679 0.96847 0.94435 1.69921 1.35932 1.40518 0.99948 0.87447 0.84287 0.81688 0.79696 1.19681 1.20458 1.17877 1.16825 0.80381 0.83893 0.83434 1.90650 1.56316 1.68772 1.31157 1.22606 1.08505 0.94920 0.87638 1.73865 1.10202 0.89858 1.25160 1.43584 1.57602 1.08834 1.05064 0.71561 1.19330 1.03773 0.96420 0.85938 1.19697 1.06277 0.96144 0.92695 1.20601 0.99160 0.97545 0.94060 1.20713 1.04335 0.92768 0.99700 1.20394 0.95307 0.99411 0.90735 1.19550 1.06205 0.91889 0.94348 0.88751 0.92223 0.92357 0.87069 0.86944 0.91307 0.86058 0.85861 0.85920 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.83 10.57 -39.25 -0.41 -7.25 16 3 C 0.45 9.92 7.99 36.01 0.29 10.21 16 4 O -0.49 -12.28 16.06 -18.75 -0.30 -12.58 16 5 C 0.12 2.72 4.17 -5.19 -0.02 2.70 16 6 N -0.43 -10.68 1.62 -117.37 -0.19 -10.87 16 7 C -0.34 -8.99 8.34 -15.01 -0.13 -9.11 16 8 H 0.13 3.63 5.97 -52.49 -0.31 3.32 16 9 C 0.08 1.98 5.00 -17.45 -0.09 1.89 16 10 N -0.83 -22.23 13.95 55.50 0.77 -21.46 16 11 Si 0.85 19.01 26.59 -169.99 -4.52 14.49 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 14 H -0.25 -5.43 5.73 56.52 0.32 -5.11 16 15 C 0.56 14.12 7.44 -12.59 -0.09 14.03 16 16 O -0.59 -14.90 16.05 5.23 0.08 -14.81 16 17 C 0.03 0.78 7.05 -80.77 -0.57 0.21 16 18 N -0.16 -3.57 8.86 34.45 0.31 -3.27 16 19 N -0.43 -7.46 6.85 32.34 0.22 -7.24 16 20 H 0.44 5.75 8.96 -190.49 -1.71 4.04 16 21 C 0.06 1.00 7.38 -84.21 -0.62 0.38 16 22 C -0.13 -1.68 10.03 -39.81 -0.40 -2.07 16 23 C -0.09 -1.14 9.96 -39.90 -0.40 -1.54 16 24 C -0.16 -2.12 9.98 -39.89 -0.40 -2.52 16 25 C -0.04 -0.66 9.87 -39.78 -0.39 -1.05 16 26 C -0.11 -2.23 6.34 -105.05 -0.67 -2.90 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.11 2.30 7.53 -51.93 -0.39 1.91 16 31 H 0.11 2.41 4.90 -51.93 -0.25 2.15 16 32 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 2.38 7.65 -52.49 -0.40 1.98 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -32.88 316.50 -6.51 -39.39 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.82 Total: 7.02 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -2.42 Total: 11.82 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 1.11 Total: -42.84 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.63 Total: -34.64 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.52 Total: 14.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.88 -6.51 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120673659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.305 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds