Wall clock time and date at job start Tue Mar 31 2020 03:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47364 * 95.07461 * 3 2 1 5 5 N 1.46494 * 109.46962 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00425 * 85.00149 * 5 4 3 7 7 C 1.50706 * 109.47128 * 274.99517 * 6 5 4 8 8 H 1.08000 * 119.99302 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00436 * 179.72498 * 7 6 5 10 10 N 1.31515 * 119.99684 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00405 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47050 * 59.99579 * 11 9 7 13 13 H 1.48496 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46492 * 299.99554 * 11 9 7 15 15 S 1.65610 * 119.99659 * 264.99299 * 5 4 3 16 16 O 1.42102 * 106.40166 * 23.54748 * 15 5 4 17 17 O 1.42099 * 106.39688 * 156.46396 * 15 5 4 18 18 N 1.65593 * 107.22016 * 270.00491 * 15 5 4 19 19 C 1.47152 * 120.98055 * 269.71949 * 18 15 5 20 20 C 1.53716 * 108.16243 * 129.43091 * 19 18 15 21 21 O 1.42964 * 109.14471 * 52.53914 * 20 19 18 22 22 C 1.42964 * 114.16620 * 297.28723 * 21 20 19 23 23 C 1.47152 * 120.98249 * 90.00174 * 18 15 5 24 24 H 1.08994 * 109.47593 * 335.06738 * 3 2 1 25 25 H 1.09004 * 109.46920 * 215.07183 * 3 2 1 26 26 H 1.09001 * 109.46999 * 59.99182 * 4 3 2 27 27 H 1.09001 * 109.46436 * 299.99489 * 4 3 2 28 28 H 1.09001 * 109.47786 * 154.99790 * 6 5 4 29 29 H 1.08998 * 109.47558 * 34.99653 * 6 5 4 30 30 H 0.97004 * 120.00247 * 180.02562 * 10 9 7 31 31 H 1.09006 * 109.68155 * 249.21005 * 19 18 15 32 32 H 1.08997 * 109.68607 * 9.76496 * 19 18 15 33 33 H 1.08991 * 109.66150 * 292.57016 * 20 19 18 34 34 H 1.09002 * 109.48769 * 172.39638 * 20 19 18 35 35 H 1.09000 * 109.50907 * 302.65632 * 22 21 20 36 36 H 1.08999 * 109.55784 * 182.53493 * 22 21 20 37 37 H 1.08995 * 109.67913 * 350.23209 * 23 18 15 38 38 H 1.08997 * 109.68103 * 110.75601 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.1285 -1.4369 5 7 4.5830 0.1297 -1.4367 6 6 5.3166 -1.1382 -1.4381 7 6 5.4610 -1.6367 -0.0232 8 1 5.0479 -1.0657 0.7951 9 6 6.1158 -2.8241 0.2260 10 7 6.6141 -3.5220 -0.7711 11 14 6.2941 -3.4422 1.9797 12 1 4.9477 -3.6437 2.5728 13 1 7.0316 -4.7311 1.9777 14 1 7.0444 -2.4434 2.7827 15 16 5.4097 1.5647 -1.4351 16 8 4.5271 2.5357 -0.8896 17 8 6.6928 1.2878 -0.8909 18 7 5.6545 1.9912 -3.0164 19 6 6.8625 1.5616 -3.7385 20 6 6.4255 0.9269 -5.0685 21 8 5.5622 1.8333 -5.7592 22 6 4.3455 2.1248 -5.0675 23 6 4.6733 2.8161 -3.7391 24 1 2.9718 -0.9310 0.4332 25 1 2.9709 0.8419 0.5905 26 1 2.7542 1.0602 -1.8700 27 1 2.7551 -0.7128 -2.0273 28 1 6.3048 -0.9859 -1.8722 29 1 4.7700 -1.8737 -2.0284 30 1 7.0746 -4.3576 -0.5958 31 1 7.5006 2.4239 -3.9321 32 1 7.4058 0.8289 -3.1419 33 1 5.8942 -0.0045 -4.8733 34 1 7.3042 0.7234 -5.6804 35 1 3.8067 1.1976 -4.8722 36 1 3.7275 2.7833 -5.6778 37 1 3.7663 2.9144 -3.1428 38 1 5.0945 3.8027 -3.9322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123138399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:24 Heat of formation + Delta-G solvation = -87.100954 kcal Electronic energy + Delta-G solvation = -24208.623713 eV Core-core repulsion = 20599.535145 eV Total energy + Delta-G solvation = -3609.088569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.16003 -37.18748 -36.79620 -35.69134 -35.34548 -34.71751 -32.76716 -31.39398 -30.64390 -27.19629 -26.95326 -24.23396 -23.62287 -22.37813 -21.34495 -18.76831 -17.64698 -17.57336 -16.84337 -16.40269 -16.24670 -15.80651 -15.34704 -15.09373 -15.05918 -14.55426 -14.35148 -14.05842 -13.88098 -13.36629 -12.66701 -12.62938 -12.54124 -12.37643 -12.09014 -11.96830 -11.79009 -11.71287 -11.48920 -11.42308 -11.34689 -11.19126 -11.07504 -10.70103 -10.62265 -10.50369 -10.28409 -10.07578 -9.80712 -8.81925 -8.54477 -8.35792 -6.18062 -4.22882 0.94893 2.96423 3.04455 3.20496 3.26775 3.31722 3.35419 3.78330 3.84134 4.32586 4.38847 4.59918 4.77263 4.82792 5.04989 5.05927 5.17883 5.20424 5.22704 5.34119 5.38627 5.51716 5.57815 5.63234 5.73213 5.86193 5.93151 6.10650 6.19972 6.36315 6.53497 7.04309 7.06414 7.20916 7.38992 7.77838 7.79671 8.05173 8.78140 9.43421 10.90367 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.006600 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.203391 B = 4241.507765 C = 5450.339406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.057 4.057 4 C 0.146 3.854 5 N -0.992 5.992 6 C 0.256 3.744 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.066 3.934 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.274 1.274 15 S 2.777 3.223 16 O -0.990 6.990 17 O -0.954 6.954 18 N -1.015 6.015 19 C 0.089 3.911 20 C 0.048 3.952 21 O -0.381 6.381 22 C 0.048 3.952 23 C 0.089 3.911 24 H 0.134 0.866 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 8.879 -8.491 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.094 4.094 3 C -0.099 4.099 4 C 0.017 3.983 5 N -0.833 5.833 6 C 0.135 3.865 7 C -0.574 4.574 8 H 0.082 0.918 9 C -0.137 4.137 10 N -0.531 5.531 11 Si 0.720 3.280 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.199 1.199 15 S 2.787 3.213 16 O -0.974 6.974 17 O -0.938 6.938 18 N -0.854 5.854 19 C -0.037 4.037 20 C -0.031 4.031 21 O -0.300 6.300 22 C -0.031 4.031 23 C -0.037 4.037 24 H 0.152 0.848 25 H 0.128 0.872 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.023 9.271 -7.954 12.584 hybrid contribution 0.476 -0.819 0.983 1.366 sum -2.547 8.452 -6.971 11.248 Atomic orbital electron populations 1.81156 1.13130 1.10242 1.09060 1.29302 0.95245 0.92129 0.92739 1.20065 0.80767 1.07788 1.01295 1.20822 0.80663 1.02472 0.94306 1.57925 1.13079 1.24097 1.88159 1.19128 0.90951 0.78466 0.97977 1.21431 1.36901 1.06320 0.92721 0.91821 1.24901 0.94960 0.96497 0.97317 1.69888 1.37051 1.15141 1.30979 0.86633 0.78453 0.78153 0.84718 1.20084 1.21200 1.19930 1.02226 0.73654 0.72770 0.72660 1.93547 1.67312 1.60271 1.76266 1.93642 1.40208 1.84772 1.75182 1.58572 1.29132 1.65310 1.32386 1.22146 0.86498 1.00765 0.94285 1.23065 0.94721 0.92134 0.93141 1.87917 1.30886 1.65746 1.45409 1.22944 0.86921 1.00045 0.93152 1.22013 0.92764 0.94729 0.94239 0.84789 0.87246 0.91178 0.89748 0.94390 0.94412 0.92514 0.90706 0.87833 0.91924 0.87858 0.92399 0.88107 0.88742 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.75 18.54 42.15 0.78 -6.97 16 2 C 0.22 3.35 15.43 -20.76 -0.32 3.03 16 3 C -0.06 -0.83 5.62 -29.52 -0.17 -0.99 16 4 C 0.15 2.07 5.32 -4.04 -0.02 2.04 16 5 N -0.99 -17.06 2.86 -115.67 -0.33 -17.39 16 6 C 0.26 5.46 5.12 -5.19 -0.03 5.43 16 7 C -0.53 -13.03 8.41 -34.44 -0.29 -13.32 16 8 H 0.06 1.50 6.89 -52.49 -0.36 1.14 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 11 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 S 2.78 48.32 6.02 -107.50 -0.65 47.67 16 16 O -0.99 -17.80 15.91 -57.17 -0.91 -18.71 16 17 O -0.95 -20.42 15.90 -57.17 -0.91 -21.33 16 18 N -1.01 -14.03 3.39 -112.82 -0.38 -14.41 16 19 C 0.09 1.13 6.60 -3.31 -0.02 1.11 16 20 C 0.05 0.54 7.00 37.53 0.26 0.80 16 21 O -0.38 -4.56 10.74 -35.23 -0.38 -4.94 16 22 C 0.05 0.48 6.98 37.31 0.26 0.74 16 23 C 0.09 0.98 6.57 -3.53 -0.02 0.96 16 24 H 0.13 2.07 6.59 -51.93 -0.34 1.73 16 25 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.07 0.84 7.61 -51.93 -0.40 0.44 16 27 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 28 H 0.04 0.87 7.61 -51.93 -0.40 0.48 16 29 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.45 7.24 -51.93 -0.38 1.08 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.98 7.25 -51.93 -0.38 0.60 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -31.25 334.52 -7.63 -38.88 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.17 Total: -1.29 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.44 Total: 1.42 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.80 Total: -61.91 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.20 Total: -44.98 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 48.32 SS G_CDS: -0.65 Total: 47.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.25 -7.63 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123138399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.221 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds