Wall clock time and date at job start Tue Mar 31 2020 04:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00219 * 2 1 4 4 O 1.20822 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99962 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46957 * 180.02562 * 5 3 2 7 7 C 1.36921 * 119.99999 * 262.93069 * 6 5 3 8 8 H 1.07999 * 120.00083 * 214.12094 * 7 6 5 9 9 C 1.39008 * 120.00049 * 34.12545 * 7 6 5 10 10 N 1.31404 * 119.99555 * 5.15021 * 9 7 6 11 11 Si 1.86800 * 120.00197 * 185.15291 * 9 7 6 12 12 H 1.48498 * 109.47178 * 90.00052 * 11 9 7 13 13 H 1.48501 * 109.46766 * 209.99995 * 11 9 7 14 14 H 1.48494 * 109.46908 * 329.99656 * 11 9 7 15 15 C 1.34768 * 120.00039 * 82.93865 * 6 5 3 16 16 O 1.21626 * 120.00280 * 6.11967 * 15 6 5 17 17 C 1.47474 * 120.00127 * 186.12341 * 15 6 5 18 18 C 1.41802 * 120.08613 * 25.93868 * 17 15 6 19 19 C 1.35583 * 119.54237 * 180.02562 * 18 17 15 20 20 C 1.41164 * 119.66271 * 359.97438 * 19 18 17 21 21 N 1.32458 * 132.02864 * 179.97438 * 20 19 18 22 22 C 1.33579 * 109.23712 * 180.02562 * 21 20 19 23 23 C 1.34999 * 108.65857 * 359.95969 * 22 21 20 24 24 N 1.37020 * 107.13503 * 0.06189 * 23 22 21 25 25 C 1.35949 * 132.37697 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47018 * 59.99704 * 1 2 3 27 27 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46791 * 300.00146 * 1 2 3 29 29 H 1.09005 * 109.46531 * 60.00092 * 5 3 2 30 30 H 1.08999 * 109.46892 * 300.00192 * 5 3 2 31 31 H 0.96997 * 119.99522 * 179.97438 * 10 9 7 32 32 H 1.07997 * 120.22927 * 359.97438 * 18 17 15 33 33 H 1.08004 * 120.16883 * 179.72253 * 19 18 17 34 34 H 1.08000 * 125.67380 * 180.02562 * 22 21 20 35 35 H 1.08000 * 126.43603 * 180.02562 * 23 22 21 36 36 H 1.08002 * 119.82962 * 359.95723 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.3163 3.2950 -1.1754 8 1 5.0918 4.0465 -1.1903 9 6 3.6577 2.9526 -2.3507 10 7 2.6468 2.1137 -2.3168 11 14 4.2096 3.6849 -3.9781 12 1 5.2387 2.8077 -4.5920 13 1 3.0442 3.7952 -4.8918 14 1 4.7846 5.0339 -3.7442 15 6 4.0348 3.3662 1.1595 16 8 3.8465 2.7928 2.2155 17 6 4.3211 4.8128 1.1469 18 6 4.0074 5.5896 0.0028 19 6 4.2758 6.9186 0.0029 20 6 4.8632 7.5126 1.1408 21 7 5.2236 8.7597 1.4039 22 6 5.7411 8.8181 2.6340 23 6 5.7119 7.5812 3.1740 24 7 5.1595 6.7455 2.2392 25 6 4.8926 5.4125 2.2455 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 3.9564 0.7804 -0.8892 30 1 3.9557 0.7808 0.8908 31 1 2.1870 1.8751 -3.1369 32 1 3.5585 5.1256 -0.8630 33 1 4.0451 7.5190 -0.8648 34 1 6.1189 9.7073 3.1167 35 1 6.0593 7.3025 4.1579 36 1 5.1313 4.8209 3.1170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172359466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:35 Heat of formation + Delta-G solvation = -3.628896 kcal Electronic energy + Delta-G solvation = -24922.308862 eV Core-core repulsion = 21181.395962 eV Total energy + Delta-G solvation = -3740.912900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39538 -39.68031 -38.66389 -36.37769 -35.55303 -34.79353 -33.23481 -31.84314 -30.26911 -28.47970 -28.28511 -26.41145 -25.21447 -23.49827 -22.42437 -21.39964 -20.52440 -19.60325 -18.02536 -17.41443 -16.73138 -16.46079 -15.67880 -15.64319 -15.46728 -15.19295 -14.95397 -14.47138 -14.18563 -14.08902 -13.62110 -13.52467 -13.03182 -12.62973 -12.43614 -12.41915 -11.69026 -11.52851 -11.37899 -11.26128 -11.16794 -11.02263 -10.88112 -10.58434 -10.43328 -9.87180 -9.84372 -9.55317 -9.20095 -8.99597 -8.42516 -8.04428 -7.44863 -6.72341 -4.36372 1.03771 1.61546 2.87118 2.92715 3.03678 3.07861 3.09977 3.45081 3.61433 3.79289 3.90659 4.18637 4.38391 4.63292 4.79389 4.96190 5.08066 5.45491 5.54287 5.56617 5.64452 5.72624 5.72899 5.87964 5.98064 6.12194 6.25583 6.33950 6.43613 6.60203 6.69699 6.87784 6.99989 7.12698 7.34060 7.38015 7.46615 7.99471 8.16403 8.69987 8.99310 9.09424 9.46891 10.33261 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.005465 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.005579 B = 5122.200063 C = 6344.782339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.377 6.377 3 C 0.484 3.516 4 O -0.491 6.491 5 C 0.157 3.843 6 N -0.414 5.414 7 C -0.346 4.346 8 H 0.106 0.894 9 C 0.046 3.954 10 N -0.855 5.855 11 Si 0.924 3.076 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.262 1.262 15 C 0.522 3.478 16 O -0.596 6.596 17 C -0.104 4.104 18 C -0.049 4.049 19 C -0.122 4.122 20 C 0.239 3.761 21 N -0.511 5.511 22 C 0.026 3.974 23 C -0.115 4.115 24 N -0.361 5.361 25 C 0.084 3.916 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.278 0.722 32 H 0.184 0.816 33 H 0.148 0.852 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 0.842 2.856 3.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.324 3.676 4 O -0.375 6.375 5 C 0.031 3.969 6 N -0.132 5.132 7 C -0.473 4.473 8 H 0.124 0.876 9 C -0.162 4.162 10 N -0.490 5.490 11 Si 0.750 3.250 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.186 1.186 15 C 0.311 3.689 16 O -0.482 6.482 17 C -0.110 4.110 18 C -0.072 4.072 19 C -0.142 4.142 20 C -0.005 4.005 21 N -0.232 5.232 22 C -0.126 4.126 23 C -0.245 4.245 24 N -0.032 5.032 25 C -0.042 4.042 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.165 0.835 34 H 0.192 0.808 35 H 0.195 0.805 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.859 1.420 2.742 3.604 hybrid contribution 0.003 -0.286 -0.351 0.453 sum 1.862 1.134 2.391 3.236 Atomic orbital electron populations 1.22927 0.78544 1.01794 1.01690 1.86437 1.21778 1.35433 1.85863 1.23674 0.92069 0.80706 0.71107 1.90518 1.66304 1.36237 1.44453 1.20413 0.87631 0.85240 1.03571 1.42992 1.56249 1.07781 1.06130 1.19691 1.19551 1.23841 0.84197 0.87638 1.25482 0.93958 0.96426 1.00307 1.69618 1.18191 1.31718 1.29476 0.85936 0.78466 0.79977 0.80651 1.19844 1.20481 1.18613 1.17609 0.81889 0.85096 0.84281 1.90666 1.56577 1.69932 1.31060 1.19752 1.01855 0.95742 0.93637 1.22348 0.94319 0.91704 0.98878 1.20217 1.03143 0.94911 0.95970 1.21230 1.02618 0.86979 0.89675 1.70710 1.20098 1.16094 1.16263 1.22373 1.01653 0.96538 0.91997 1.22560 1.13631 0.90793 0.97552 1.42722 1.39014 1.07339 1.14087 1.21864 0.99951 0.81568 1.00776 0.92566 0.89630 0.93146 0.86492 0.89633 0.91148 0.79929 0.83461 0.80775 0.80548 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -7.64 10.56 -39.25 -0.41 -8.06 16 3 C 0.48 11.19 5.99 36.01 0.22 11.40 16 4 O -0.49 -12.81 15.03 -18.75 -0.28 -13.09 16 5 C 0.16 3.44 5.18 -5.19 -0.03 3.41 16 6 N -0.41 -9.54 2.15 -117.30 -0.25 -9.79 16 7 C -0.35 -7.72 6.12 -14.99 -0.09 -7.81 16 8 H 0.11 2.26 6.18 -52.49 -0.32 1.93 16 9 C 0.05 1.03 5.12 -17.45 -0.09 0.94 16 10 N -0.85 -20.24 8.71 55.50 0.48 -19.75 16 11 Si 0.92 17.56 29.56 -169.99 -5.02 12.54 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 13 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 14 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 15 C 0.52 12.04 7.16 -12.50 -0.09 11.95 16 16 O -0.60 -14.74 16.25 5.25 0.09 -14.65 16 17 C -0.10 -2.13 5.53 -105.01 -0.58 -2.71 16 18 C -0.05 -0.96 7.77 -39.17 -0.30 -1.26 16 19 C -0.12 -2.20 10.08 -39.42 -0.40 -2.60 16 20 C 0.24 4.47 7.80 -155.92 -1.22 3.25 16 21 N -0.51 -9.35 11.31 -12.72 -0.14 -9.49 16 22 C 0.03 0.38 11.82 -17.94 -0.21 0.17 16 23 C -0.12 -1.68 11.75 -16.38 -0.19 -1.87 16 24 N -0.36 -6.32 2.93 -62.00 -0.18 -6.50 16 25 C 0.08 1.52 10.53 -15.96 -0.17 1.35 16 26 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.12 2.49 7.10 -51.93 -0.37 2.12 16 30 H 0.09 1.75 7.56 -51.93 -0.39 1.36 16 31 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 32 H 0.18 3.79 5.32 -52.49 -0.28 3.51 16 33 H 0.15 2.33 8.06 -52.48 -0.42 1.91 16 34 H 0.18 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.17 2.76 7.81 -52.49 -0.41 2.35 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -30.08 314.11 -6.53 -36.61 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.45 Total: 9.43 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: -2.09 Total: 18.03 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.09 Total: -45.54 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.61 Total: -35.80 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.08 -6.53 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172359466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.977 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds