Wall clock time and date at job start Tue Mar 31 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35930 * 116.99850 * 2 1 4 4 C 1.38762 * 119.98432 * 179.97438 * 3 2 1 5 5 C 1.38038 * 120.01204 * 180.02562 * 4 3 2 6 6 C 1.38885 * 119.98884 * 359.97389 * 5 4 3 7 7 N 1.40139 * 120.01354 * 179.97438 * 6 5 4 8 8 C 1.36114 * 124.92292 * 180.02562 * 7 6 5 9 9 C 1.35758 * 107.07808 * 179.76530 * 8 7 6 10 10 O 1.36078 * 127.26448 * 180.23235 * 9 8 7 11 11 C 1.41862 * 105.47762 * 0.37707 * 9 8 7 12 12 C 1.47353 * 126.45539 * 179.87877 * 11 9 8 13 13 O 1.21643 * 119.99807 * 359.71205 * 12 11 9 14 14 N 1.34777 * 120.00151 * 179.43829 * 12 11 9 15 15 C 1.36913 * 119.99772 * 180.27586 * 14 12 11 16 16 H 1.08001 * 119.99981 * 0.02562 * 15 14 12 17 17 C 1.39014 * 119.99710 * 179.97438 * 15 14 12 18 18 N 1.31384 * 120.00142 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99906 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99945 * 19 17 15 22 22 H 1.48498 * 109.47018 * 239.99992 * 19 17 15 23 23 N 1.28461 * 124.93280 * 0.02562 * 7 6 5 24 24 C 1.38872 * 119.96873 * 0.25511 * 6 5 4 25 25 C 1.38044 * 119.98737 * 359.51487 * 24 6 5 26 26 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47575 * 300.00427 * 1 2 3 28 28 H 1.09002 * 109.47203 * 60.00315 * 1 2 3 29 29 H 1.08004 * 119.99506 * 359.97421 * 4 3 2 30 30 H 1.08009 * 120.00935 * 180.02562 * 5 4 3 31 31 H 1.07995 * 126.46231 * 359.97438 * 8 7 6 32 32 H 0.96700 * 114.00212 * 270.17626 * 10 9 8 33 33 H 0.97000 * 119.99736 * 0.27083 * 14 12 11 34 34 H 0.96996 * 120.00316 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.00850 * 179.72077 * 24 6 5 36 36 H 1.07999 * 119.99386 * 180.22931 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 3.4318 1.2834 0.0005 5 6 4.0590 2.5131 0.0011 6 6 3.3029 3.6781 0.0005 7 7 3.9391 4.9267 0.0016 8 6 3.2985 6.1277 0.0017 9 6 4.2559 7.0902 0.0082 10 8 4.0691 8.4381 0.0150 11 6 5.4922 6.3945 0.0029 12 6 6.8365 6.9980 0.0043 13 8 6.9599 8.2081 0.0051 14 7 7.9293 6.2092 0.0102 15 6 9.1783 6.7700 0.0171 16 1 9.2878 7.8445 0.0183 17 6 10.3055 5.9564 0.0237 18 7 10.1722 4.6493 0.0238 19 14 12.0096 6.7215 0.0340 20 1 11.8877 8.2015 0.0328 21 1 12.7406 6.2855 1.2507 22 1 12.7550 6.2858 -1.1742 23 7 5.2115 5.1040 0.0027 24 6 1.9161 3.6050 0.0048 25 6 1.2900 2.3747 -0.0005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 4.0197 0.3775 0.0014 30 1 5.1376 2.5693 0.0011 31 1 2.2301 6.2852 0.0006 32 1 4.0137 8.8320 -0.8664 33 1 7.8309 5.2442 0.0095 34 1 10.9587 4.0816 0.0280 35 1 1.3275 4.5105 0.0089 36 1 0.2115 2.3178 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180729658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:25 Heat of formation + Delta-G solvation = 4.079546 kcal Electronic energy + Delta-G solvation = -23369.332037 eV Core-core repulsion = 19628.753400 eV Total energy + Delta-G solvation = -3740.578637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.52996 -40.32703 -38.14768 -37.52135 -36.70997 -33.92892 -32.78528 -31.58779 -31.21898 -29.76422 -28.85537 -27.47121 -25.36627 -23.52162 -23.25544 -21.45963 -20.86192 -19.32007 -18.71005 -18.23153 -17.73681 -17.04135 -16.31541 -16.12494 -16.09061 -15.73777 -14.93776 -14.61177 -14.25214 -14.08837 -13.95730 -13.63260 -13.54328 -13.31089 -13.12613 -12.80272 -12.63920 -12.26946 -11.59737 -11.50362 -11.41013 -11.12277 -11.05372 -10.34454 -10.28962 -9.93107 -9.65389 -9.41401 -9.33410 -8.78312 -8.56469 -8.00991 -7.77995 -6.47985 -3.82494 0.72134 0.98929 2.23246 2.35983 2.51626 2.94436 3.20460 3.26238 3.34087 3.51281 4.11906 4.26875 4.37635 4.41805 4.54870 4.66234 4.77376 4.82382 4.93477 4.97510 5.06291 5.09597 5.32929 5.35909 5.43260 5.63144 5.72744 5.80245 5.92753 6.11116 6.20512 6.32823 6.68563 6.96715 7.15305 7.49880 8.00279 8.02012 8.20728 8.60570 9.12182 9.52069 10.05512 10.68644 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.003426 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.297992 B = 8171.867469 C = 9754.518931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.119 3.881 4 C -0.126 4.126 5 C -0.070 4.070 6 C 0.115 3.885 7 N -0.237 5.237 8 C -0.054 4.054 9 C 0.045 3.955 10 O -0.452 6.452 11 C 0.019 3.981 12 C 0.504 3.496 13 O -0.582 6.582 14 N -0.532 5.532 15 C -0.295 4.295 16 H 0.109 0.891 17 C 0.024 3.976 18 N -0.885 5.885 19 Si 0.934 3.066 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.265 5.265 24 C -0.093 4.093 25 C -0.186 4.186 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.182 0.818 32 H 0.384 0.616 33 H 0.400 0.600 34 H 0.274 0.726 35 H 0.136 0.864 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.517 -9.402 -1.679 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.073 3.927 4 C -0.146 4.146 5 C -0.089 4.089 6 C 0.024 3.976 7 N -0.019 5.019 8 C -0.194 4.194 9 C -0.010 4.010 10 O -0.257 6.257 11 C -0.144 4.144 12 C 0.289 3.711 13 O -0.466 6.466 14 N -0.166 5.166 15 C -0.426 4.426 16 H 0.127 0.873 17 C -0.179 4.179 18 N -0.525 5.525 19 Si 0.760 3.240 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.206 1.206 23 N -0.099 5.099 24 C -0.114 4.114 25 C -0.205 4.205 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.199 0.801 32 H 0.238 0.762 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.729 -10.065 -1.057 22.173 hybrid contribution 0.007 0.704 -0.472 0.848 sum -19.722 -9.361 -1.529 21.884 Atomic orbital electron populations 1.23085 0.78309 1.04093 1.01440 1.86097 1.21437 1.26632 1.88638 1.19089 0.92367 0.84261 0.96972 1.20357 0.91265 0.98317 1.04618 1.20903 1.01644 0.89277 0.97094 1.17524 0.91249 0.82253 1.06572 1.42122 1.03692 1.04124 1.51987 1.22716 0.99624 0.84784 1.12306 1.18138 0.89892 0.84763 1.08229 1.84873 1.93858 1.14278 1.32697 1.23220 0.97102 0.88532 1.05509 1.16335 0.81278 0.86484 0.87001 1.90650 1.85084 1.13110 1.57797 1.41838 1.04694 1.09459 1.60619 1.19895 0.81220 0.94536 1.46935 0.87322 1.25398 1.00522 0.95210 0.96820 1.69641 1.31507 1.03086 1.48299 0.85729 0.80871 0.79539 0.77819 1.18947 1.20556 1.20573 1.73786 0.95624 1.19524 1.20921 1.20584 0.91509 0.98567 1.00695 1.20987 1.00215 0.91194 1.08149 0.88151 0.92520 0.92534 0.83940 0.82867 0.80103 0.76154 0.76524 0.91568 0.84670 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.94 10.50 -19.52 -0.20 -3.14 16 3 C 0.12 1.22 6.69 -39.19 -0.26 0.96 16 4 C -0.13 -1.42 9.98 -39.46 -0.39 -1.81 16 5 C -0.07 -0.92 9.59 -39.42 -0.38 -1.30 16 6 C 0.12 1.58 6.66 -83.58 -0.56 1.02 16 7 N -0.24 -3.93 3.52 -10.38 -0.04 -3.97 16 8 C -0.05 -0.83 10.80 -16.54 -0.18 -1.01 16 9 C 0.05 0.86 7.35 -39.08 -0.29 0.57 16 10 O -0.45 -8.09 13.20 -22.27 -0.29 -8.38 16 11 C 0.02 0.43 7.13 -82.67 -0.59 -0.16 16 12 C 0.50 13.43 7.76 -12.55 -0.10 13.33 16 13 O -0.58 -16.95 16.10 2.95 0.05 -16.90 16 14 N -0.53 -14.61 5.28 -11.97 -0.06 -14.67 16 15 C -0.30 -8.46 9.68 -14.99 -0.15 -8.60 16 16 H 0.11 3.21 7.15 -52.49 -0.38 2.83 16 17 C 0.02 0.66 5.50 -17.46 -0.10 0.56 16 18 N -0.89 -24.38 13.05 55.50 0.72 -23.66 16 19 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 N -0.27 -5.40 10.84 33.45 0.36 -5.04 16 24 C -0.09 -0.96 9.42 -39.42 -0.37 -1.33 16 25 C -0.19 -1.66 9.03 -39.46 -0.36 -2.02 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.15 2.21 7.64 -52.48 -0.40 1.81 16 31 H 0.18 1.90 6.96 -52.49 -0.37 1.53 16 32 H 0.38 5.07 9.07 45.56 0.41 5.48 16 33 H 0.40 10.79 7.61 -40.82 -0.31 10.48 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.14 1.07 6.64 -52.49 -0.35 0.72 16 36 H 0.14 0.82 6.29 -52.49 -0.33 0.49 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -35.22 323.93 -4.82 -40.04 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -2.49 Total: 13.52 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.72 Total: 1.34 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.99 Total: -47.34 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.45 Total: -28.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.22 -4.82 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180729658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.123 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds