Wall clock time and date at job start Tue Mar 31 2020 04:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00342 * 2 1 4 4 C 1.53004 * 109.47346 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47040 * 180.02562 * 4 3 2 6 6 C 1.34947 * 126.04015 * 125.00569 * 5 4 3 7 7 C 1.35313 * 107.74698 * 180.02562 * 6 5 4 8 8 S 1.76206 * 126.03648 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.40458 * 336.45961 * 8 7 6 10 10 O 1.42105 * 106.39745 * 203.54059 * 8 7 6 11 11 N 1.65596 * 107.21748 * 90.00474 * 8 7 6 12 12 C 1.46500 * 120.00265 * 64.99079 * 11 8 7 13 13 H 1.08998 * 109.47481 * 335.00681 * 12 11 8 14 14 C 1.53001 * 109.46746 * 95.00616 * 12 11 8 15 15 C 1.50694 * 109.47517 * 215.00315 * 12 11 8 16 16 H 1.08002 * 120.00179 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00472 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 179.97438 * 17 15 12 20 20 H 1.48490 * 109.47339 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 300.00306 * 19 17 15 22 22 H 1.48504 * 109.46636 * 59.99865 * 19 17 15 23 23 C 1.39863 * 107.92287 * 0.26100 * 7 6 5 24 24 N 1.30845 * 108.20347 * 359.55290 * 23 7 6 25 25 H 1.09000 * 109.47673 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46620 * 299.99862 * 1 2 3 27 27 H 1.08994 * 109.47188 * 59.99225 * 1 2 3 28 28 H 1.09006 * 109.47265 * 60.00267 * 3 2 1 29 29 H 1.08999 * 109.47570 * 300.00493 * 3 2 1 30 30 H 1.08996 * 109.46748 * 59.99748 * 4 3 2 31 31 H 1.09004 * 109.47015 * 299.99885 * 4 3 2 32 32 H 1.07997 * 126.12258 * 359.97438 * 6 5 4 33 33 H 0.97004 * 119.99689 * 245.00327 * 11 8 7 34 34 H 1.09000 * 109.47703 * 180.02562 * 14 12 11 35 35 H 1.09007 * 109.47140 * 300.00315 * 14 12 11 36 36 H 1.09000 * 109.47809 * 59.99872 * 14 12 11 37 37 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 38 38 H 1.08006 * 125.90201 * 179.73900 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 4.1314 2.5228 0.0000 6 6 5.0265 2.9930 0.8937 7 6 5.3260 4.2662 0.5469 8 16 6.4463 5.3339 1.3892 9 8 6.5302 4.8548 2.7244 10 8 6.0578 6.6612 1.0627 11 7 7.9417 5.1053 0.7155 12 6 8.1790 5.4719 -0.6829 13 1 7.2366 5.4468 -1.2300 14 6 8.7687 6.8822 -0.7472 15 6 9.1451 4.4948 -1.3015 16 1 9.5424 3.6817 -0.7121 17 6 9.5220 4.6388 -2.6199 18 7 9.0378 5.6287 -3.3377 19 14 10.7202 3.4280 -3.3865 20 1 10.9606 3.7996 -4.8039 21 1 12.0038 3.4624 -2.6407 22 1 10.1482 2.0590 -3.3243 23 6 4.5841 4.5871 -0.5946 24 7 3.8722 3.5408 -0.9269 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8567 0.6437 -0.8908 31 1 3.8575 0.6434 0.8892 32 1 5.4308 2.4505 1.7355 33 1 8.6605 4.7284 1.2468 34 1 8.9449 7.1554 -1.7877 35 1 8.0698 7.5891 -0.2997 36 1 9.7111 6.9075 -0.2001 37 1 9.3032 5.7302 -4.2652 38 1 4.5988 5.5340 -1.1139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269703822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:23 Heat of formation + Delta-G solvation = -43.737112 kcal Electronic energy + Delta-G solvation = -22920.168078 eV Core-core repulsion = 19312.959907 eV Total energy + Delta-G solvation = -3607.208171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18094 -38.31788 -36.57131 -35.35992 -35.17098 -34.00779 -32.15405 -30.45032 -29.28062 -28.20648 -26.61327 -25.18374 -23.77192 -21.81302 -21.01334 -20.72736 -18.77174 -17.86527 -17.22233 -16.71822 -16.55738 -16.08228 -15.67551 -15.29937 -15.13690 -14.69445 -14.59288 -14.13178 -13.69391 -13.48467 -12.88205 -12.57467 -12.43410 -12.15848 -12.06615 -11.73453 -11.66491 -11.55381 -11.40312 -11.24206 -11.12411 -10.96338 -10.57260 -10.40704 -10.24244 -10.11814 -10.08112 -9.50244 -9.16525 -9.06131 -8.58915 -8.25019 -6.11593 -4.19516 1.17161 1.67531 2.23127 2.55496 3.25621 3.31198 3.32613 3.43903 3.91280 4.31500 4.36242 4.46153 4.54520 4.62346 4.83294 4.89985 4.95805 4.97501 5.16847 5.20233 5.27374 5.31126 5.34815 5.66176 5.80585 6.41059 6.55144 6.62135 6.82868 6.88643 7.10606 7.14940 7.54733 7.61609 7.74577 7.87953 8.07568 8.31446 8.83443 9.46611 10.93922 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.004488 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.480211 B = 6237.961665 C = 7563.715457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.131 3.869 5 N -0.366 5.366 6 C 0.178 3.822 7 C -0.800 4.800 8 S 2.721 3.279 9 O -0.991 6.991 10 O -0.965 6.965 11 N -1.102 6.102 12 C 0.277 3.723 13 H 0.042 0.958 14 C -0.158 4.158 15 C -0.526 4.526 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.898 3.102 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.278 1.278 23 C 0.146 3.854 24 N -0.298 5.298 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.408 0.592 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.031 0.969 37 H 0.264 0.736 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.376 -8.361 6.776 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.010 3.990 5 N -0.145 5.145 6 C 0.026 3.974 7 C -0.897 4.897 8 S 2.807 3.193 9 O -0.981 6.981 10 O -0.955 6.955 11 N -0.862 5.862 12 C 0.173 3.827 13 H 0.059 0.941 14 C -0.218 4.218 15 C -0.566 4.566 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.523 5.523 19 Si 0.726 3.274 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.044 4.044 24 N -0.116 5.116 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.207 0.793 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -13.608 -8.485 6.261 17.215 hybrid contribution 1.188 -0.885 -0.337 1.520 sum -12.419 -9.370 5.925 16.647 Atomic orbital electron populations 1.22774 0.80045 1.03021 1.00380 1.87776 1.20505 1.27006 1.95611 1.22663 0.92582 0.85247 1.02157 1.21486 0.92621 0.79183 1.05759 1.48926 1.32984 1.11876 1.20737 1.22402 0.89052 0.92887 0.93062 1.31856 1.28235 1.12185 1.17405 1.00880 0.72731 0.73631 0.72066 1.93495 1.87063 1.82584 1.34945 1.93547 1.83159 1.34000 1.84777 1.55572 1.25882 1.80176 1.24602 1.18470 0.97023 0.92898 0.74312 0.94065 1.22242 0.98637 0.97246 1.03684 1.21264 1.27106 1.11961 0.96252 0.91965 1.24904 0.96267 0.95609 0.97017 1.69867 1.43698 1.30001 1.08780 0.86563 0.81396 0.81209 0.78233 1.21189 1.20143 1.20400 1.23587 0.90825 0.97704 0.92280 1.77378 1.25098 0.96398 1.12754 0.89222 0.93851 0.93694 0.92569 0.91368 0.88220 0.87373 0.79308 0.75894 0.89094 0.95470 0.94984 0.92553 0.78442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.85 10.70 -35.23 -0.38 -4.23 16 3 C 0.05 0.51 6.12 37.16 0.23 0.74 16 4 C 0.13 1.36 6.88 -4.04 -0.03 1.33 16 5 N -0.37 -5.15 3.68 -61.37 -0.23 -5.37 16 6 C 0.18 2.55 11.19 -17.22 -0.19 2.36 16 7 C -0.80 -13.52 6.00 -40.02 -0.24 -13.76 16 8 S 2.72 49.87 5.79 -107.50 -0.62 49.25 16 9 O -0.99 -18.70 17.85 -57.17 -1.02 -19.72 16 10 O -0.96 -20.17 17.13 -57.17 -0.98 -21.15 16 11 N -1.10 -21.64 5.46 -5.88 -0.03 -21.67 16 12 C 0.28 6.54 2.76 -69.08 -0.19 6.35 16 13 H 0.04 1.03 7.67 -51.93 -0.40 0.63 16 14 C -0.16 -3.77 9.29 37.16 0.35 -3.43 16 15 C -0.53 -13.47 8.76 -34.44 -0.30 -13.78 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 19 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.15 2.51 11.63 -17.36 -0.20 2.31 16 24 N -0.30 -4.96 12.42 30.63 0.38 -4.58 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.27 8.14 -51.92 -0.42 -0.16 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.41 7.24 8.83 -34.47 -0.30 6.94 16 34 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 35 H 0.03 0.61 7.64 -51.93 -0.40 0.21 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.20 3.16 8.06 -52.48 -0.42 2.74 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -32.90 341.67 -6.87 -39.77 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.18 Total: 5.49 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 0.44 Total: -14.92 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.75 Total: -55.05 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -2.38 Total: -45.10 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.62 Total: 49.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.90 -6.87 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269703822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.969 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds