Wall clock time and date at job start Tue Mar 31 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00252 * 2 1 4 4 C 1.53001 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47201 * 180.02562 * 4 3 2 6 6 C 1.34948 * 126.04183 * 124.99733 * 5 4 3 7 7 C 1.35309 * 107.75050 * 180.02562 * 6 5 4 8 8 S 1.76199 * 126.04200 * 180.02562 * 7 6 5 9 9 O 1.42095 * 106.40227 * 336.45863 * 8 7 6 10 10 O 1.42107 * 106.40094 * 203.54279 * 8 7 6 11 11 N 1.65593 * 107.21807 * 90.00117 * 8 7 6 12 12 C 1.46506 * 120.00245 * 65.00204 * 11 8 7 13 13 C 1.52997 * 109.47289 * 165.00019 * 12 11 8 14 14 C 1.50696 * 109.47242 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99967 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00542 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47011 * 90.00022 * 18 16 14 20 20 H 1.48498 * 109.47118 * 209.99881 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00401 * 18 16 14 22 22 C 1.39874 * 107.92009 * 0.26350 * 7 6 5 23 23 N 1.30838 * 108.19909 * 359.55760 * 22 7 6 24 24 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46274 * 299.99651 * 1 2 3 26 26 H 1.08994 * 109.47137 * 59.99429 * 1 2 3 27 27 H 1.08995 * 109.47332 * 60.00645 * 3 2 1 28 28 H 1.09001 * 109.47351 * 300.00185 * 3 2 1 29 29 H 1.08997 * 109.47124 * 60.00613 * 4 3 2 30 30 H 1.08993 * 109.47001 * 300.00228 * 4 3 2 31 31 H 1.08000 * 126.12112 * 0.04331 * 6 5 4 32 32 H 0.97000 * 120.00411 * 244.99876 * 11 8 7 33 33 H 1.09001 * 109.47060 * 285.00288 * 12 11 8 34 34 H 1.09004 * 109.47073 * 44.99777 * 12 11 8 35 35 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 36 36 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 37 37 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 38 38 H 1.08001 * 125.90454 * 179.73067 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5228 0.0000 6 6 5.0265 2.9930 0.8938 7 6 5.3260 4.2662 0.5469 8 16 6.4472 5.3335 1.3886 9 8 6.5319 4.8543 2.7236 10 8 6.0588 6.6610 1.0625 11 7 7.9420 5.1045 0.7138 12 6 8.1785 5.4714 -0.6847 13 6 9.6842 5.5183 -0.9521 14 6 9.9274 5.8963 -2.3904 15 1 9.0916 6.0839 -3.0483 16 6 11.2169 6.0027 -2.8668 17 7 12.2346 5.7738 -2.0659 18 14 11.5184 6.4706 -4.6499 19 1 11.6191 7.9478 -4.7638 20 1 12.7843 5.8507 -5.1171 21 1 10.3913 5.9854 -5.4863 22 6 4.5842 4.5871 -0.5946 23 7 3.8723 3.5408 -0.9269 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6888 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8567 0.6439 -0.8909 30 1 3.8574 0.6434 0.8890 31 1 5.4314 2.4502 1.7351 32 1 8.6611 4.7275 1.2445 33 1 7.7164 4.7310 -1.3377 34 1 7.7437 6.4514 -0.8817 35 1 10.1462 6.2587 -0.2991 36 1 10.1189 4.5384 -0.7550 37 1 13.1418 5.8482 -2.4010 38 1 4.5988 5.5339 -1.1140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273483569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:18 Heat of formation + Delta-G solvation = -49.474721 kcal Electronic energy + Delta-G solvation = -22133.684628 eV Core-core repulsion = 18526.227656 eV Total energy + Delta-G solvation = -3607.456973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49648 -38.46716 -36.88124 -35.51702 -35.32026 -34.25582 -32.71120 -30.75818 -29.52140 -29.08955 -26.76629 -24.45802 -23.98188 -22.13446 -21.23844 -20.99089 -19.10705 -18.16356 -17.18518 -16.92565 -16.70086 -16.24342 -15.90280 -15.59504 -15.39365 -14.95820 -14.53768 -14.41100 -14.03432 -13.78626 -13.71738 -13.18575 -12.60699 -12.52058 -12.27486 -11.90956 -11.83744 -11.78009 -11.66029 -11.54682 -11.25932 -11.08770 -10.73169 -10.61193 -10.43022 -10.26126 -9.81734 -9.56882 -9.40347 -9.24250 -8.86603 -8.39224 -6.06761 -4.09850 0.78509 1.36439 1.96390 2.21091 3.25981 3.30525 3.36744 3.39501 3.53143 4.04900 4.16161 4.33025 4.36798 4.42568 4.57546 4.70168 4.82927 4.83479 4.89197 5.06244 5.14629 5.17935 5.30178 5.37821 5.46214 5.84446 6.23043 6.24992 6.43220 6.53464 6.57093 6.76634 7.23652 7.47123 7.58411 7.68036 7.92425 8.30318 8.96207 9.54707 11.04689 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.003181 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.748200 B = 8801.163039 C = 9881.130436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.051 3.949 4 C 0.130 3.870 5 N -0.364 5.364 6 C 0.181 3.819 7 C -0.809 4.809 8 S 2.725 3.275 9 O -0.979 6.979 10 O -0.961 6.961 11 N -1.112 6.112 12 C 0.120 3.880 13 C 0.017 3.983 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.140 3.860 23 N -0.295 5.295 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.193 0.807 32 H 0.415 0.585 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.951 -10.617 6.412 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.008 3.992 5 N -0.143 5.143 6 C 0.029 3.971 7 C -0.906 4.906 8 S 2.811 3.189 9 O -0.969 6.969 10 O -0.951 6.951 11 N -0.874 5.874 12 C -0.005 4.005 13 C -0.021 4.021 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.050 4.050 23 N -0.113 5.113 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.210 0.790 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -20.999 -10.840 6.096 24.405 hybrid contribution 0.780 0.020 -0.750 1.082 sum -20.219 -10.819 5.346 23.546 Atomic orbital electron populations 1.22788 0.79872 1.03157 1.00423 1.87780 1.20643 1.26818 1.95615 1.22647 0.92410 0.85432 1.02196 1.21546 0.92841 0.78848 1.05962 1.48998 1.32715 1.11984 1.20566 1.22487 0.88834 0.92853 0.92967 1.31862 1.28789 1.12264 1.17686 1.00837 0.72330 0.73494 0.72222 1.93532 1.86738 1.82403 1.34195 1.93562 1.82841 1.33931 1.84780 1.55505 1.27289 1.80752 1.23814 1.21613 1.02520 0.98913 0.77415 1.19283 0.87536 0.98052 0.97264 1.21097 0.92256 1.47419 0.95427 0.92257 1.25002 0.96201 0.95252 0.97874 1.69959 0.98626 1.49190 1.35427 0.86539 0.77637 0.78706 0.84794 1.20534 1.21261 1.19805 1.23636 0.91059 0.97782 0.92510 1.77410 1.24597 0.96435 1.12896 0.89106 0.93790 0.93650 0.92526 0.91373 0.88040 0.87160 0.79004 0.75011 0.93109 0.91267 0.95553 0.95889 0.92864 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.23 10.70 -35.23 -0.38 -3.61 16 3 C 0.05 0.41 6.12 37.16 0.23 0.63 16 4 C 0.13 1.02 6.88 -4.04 -0.03 1.00 16 5 N -0.36 -4.04 3.68 -61.37 -0.23 -4.26 16 6 C 0.18 2.01 11.19 -17.23 -0.19 1.82 16 7 C -0.81 -10.74 6.14 -40.01 -0.25 -10.99 16 8 S 2.72 41.10 5.88 -107.50 -0.63 40.47 16 9 O -0.98 -15.93 17.85 -57.17 -1.02 -16.95 16 10 O -0.96 -17.30 17.34 -57.17 -0.99 -18.30 16 11 N -1.11 -17.87 6.00 -10.61 -0.06 -17.93 16 12 C 0.12 2.31 6.16 -4.04 -0.02 2.29 16 13 C 0.02 0.42 5.11 -27.89 -0.14 0.28 16 14 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 18 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.14 1.88 11.81 -17.36 -0.21 1.68 16 23 N -0.29 -3.95 12.42 30.63 0.38 -3.57 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.59 8.07 -51.93 -0.42 0.18 16 31 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.42 6.15 8.65 -34.47 -0.30 5.85 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.34 7.75 -51.93 -0.40 0.93 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 38 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -35.23 346.93 -7.21 -42.44 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.31 Total: 0.58 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.83 Total: -51.05 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -2.39 Total: -38.85 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 41.10 SS G_CDS: -0.63 Total: 40.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.23 -7.21 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273483569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.034 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds