Wall clock time and date at job start Tue Mar 31 2020 03:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34745 * 126.44665 * 2 1 4 4 C 1.33963 * 107.75951 * 180.26031 * 3 2 1 5 5 N 1.30259 * 108.75814 * 359.74231 * 4 3 2 6 6 C 1.34329 * 126.44274 * 179.81412 * 2 1 3 7 7 C 1.50701 * 126.16531 * 0.02562 * 6 2 1 8 8 N 1.46503 * 109.47157 * 269.71394 * 7 6 2 9 9 S 1.65595 * 119.99931 * 165.00133 * 8 7 6 10 10 O 1.42110 * 106.40327 * 178.53764 * 9 8 7 11 11 O 1.42100 * 106.40441 * 311.45901 * 9 8 7 12 12 N 1.65599 * 107.21997 * 65.00063 * 9 8 7 13 13 C 1.46498 * 119.99839 * 269.99774 * 12 9 8 14 14 C 1.46503 * 120.00232 * 90.00145 * 12 9 8 15 15 H 1.09004 * 109.47024 * 359.97438 * 14 12 9 16 16 C 1.52998 * 109.46774 * 240.00134 * 14 12 9 17 17 C 1.50697 * 109.47320 * 119.99996 * 14 12 9 18 18 H 1.07997 * 119.99951 * 34.99973 * 17 14 12 19 19 C 1.37877 * 119.99922 * 215.00054 * 17 14 12 20 20 N 1.31507 * 120.00091 * 184.91400 * 19 17 14 21 21 Si 1.86806 * 120.00073 * 4.91638 * 19 17 14 22 22 H 1.48497 * 109.47061 * 84.83183 * 21 19 17 23 23 H 1.48496 * 109.47462 * 204.83650 * 21 19 17 24 24 H 1.48500 * 109.47040 * 324.83444 * 21 19 17 25 25 H 1.08998 * 109.47957 * 270.17925 * 1 2 3 26 26 H 1.09000 * 109.47282 * 30.18671 * 1 2 3 27 27 H 1.09010 * 109.47053 * 150.18229 * 1 2 3 28 28 H 1.07994 * 125.62102 * 179.70470 * 4 3 2 29 29 H 1.09003 * 109.47331 * 29.71313 * 7 6 2 30 30 H 1.08998 * 109.47412 * 149.71404 * 7 6 2 31 31 H 0.96994 * 119.99980 * 344.99994 * 8 7 6 32 32 H 1.08999 * 109.47477 * 90.00093 * 13 12 9 33 33 H 1.09003 * 109.46875 * 209.99724 * 13 12 9 34 34 H 1.08999 * 109.47196 * 329.99774 * 13 12 9 35 35 H 1.09004 * 109.47299 * 54.97751 * 16 14 12 36 36 H 1.08998 * 109.47052 * 174.97836 * 16 14 12 37 37 H 1.09002 * 109.47605 * 294.97492 * 16 14 12 38 38 H 0.97004 * 120.00441 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5765 0.6547 -0.0058 5 7 3.5781 -0.6479 -0.0038 6 6 2.3049 -1.0806 0.0035 7 6 1.8545 -2.5187 0.0076 8 7 1.7146 -2.9827 1.3902 9 16 0.8889 -4.3809 1.7148 10 8 0.9604 -4.5720 3.1211 11 8 -0.3382 -4.2968 1.0032 12 7 1.7421 -5.6242 1.0301 13 6 1.4603 -6.0345 -0.3477 14 6 2.7786 -6.3139 1.8023 15 1 2.8444 -5.8730 2.7971 16 6 4.1254 -6.1695 1.0909 17 6 2.4277 -7.7745 1.9219 18 1 1.9334 -8.2797 1.1054 19 6 2.7378 -8.4660 3.0738 20 7 2.5200 -9.7611 3.1421 21 14 3.4671 -7.5630 4.5375 22 1 2.3733 -6.9740 5.3509 23 1 4.2449 -8.5159 5.3695 24 1 4.3631 -6.4813 4.0554 25 1 -0.3635 0.0032 1.0276 26 1 -0.3634 0.8883 -0.5167 27 1 -0.3634 -0.8917 -0.5110 28 1 4.4535 1.2848 -0.0118 29 1 0.8943 -2.6002 -0.5019 30 1 2.5928 -3.1323 -0.5085 31 1 2.1056 -2.4709 2.1154 32 1 2.0909 -5.4670 -1.0320 33 1 1.6685 -7.0986 -0.4597 34 1 0.4119 -5.8433 -0.5765 35 1 4.3372 -5.1132 0.9248 36 1 4.9110 -6.6048 1.7084 37 1 4.0876 -6.6875 0.1326 38 1 2.7384 -10.2476 3.9524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282253429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:54 Heat of formation + Delta-G solvation = -49.117911 kcal Electronic energy + Delta-G solvation = -23696.195649 eV Core-core repulsion = 20088.754148 eV Total energy + Delta-G solvation = -3607.441500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60803 -36.81336 -36.36918 -36.12915 -35.29718 -34.22288 -32.47997 -32.42450 -29.92471 -27.92562 -25.74899 -25.56843 -25.13604 -22.48992 -21.14413 -20.68005 -18.89296 -17.75002 -17.47964 -17.18683 -16.84580 -16.36578 -15.87479 -15.34621 -15.05621 -14.39608 -14.18313 -13.57525 -13.42560 -13.31316 -13.27781 -12.90551 -12.63606 -12.55149 -12.46541 -11.98407 -11.84179 -11.74817 -11.54615 -11.35662 -11.31899 -11.11450 -10.79748 -10.74502 -10.66462 -10.31800 -9.77835 -9.46629 -9.32704 -8.98420 -8.58457 -8.06186 -6.15606 -4.15997 0.99704 1.26745 2.39128 2.49116 3.30980 3.37930 3.46388 3.51187 3.87030 4.05019 4.39667 4.46473 4.53080 4.84057 4.94824 5.11941 5.16717 5.20072 5.30592 5.53610 5.64062 5.70911 5.79627 5.86997 6.01719 6.06872 6.15101 6.40036 6.43586 6.60254 6.67069 6.93497 7.07562 7.21585 7.46702 7.51876 7.68012 8.44576 8.88562 9.46148 10.96191 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.023419 B = 0.004533 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.347169 B = 6175.979378 C = 6458.043466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.022 4.022 3 O -0.205 6.205 4 C 0.164 3.836 5 N -0.471 5.471 6 C -0.025 4.025 7 C 0.207 3.793 8 N -1.131 6.131 9 S 2.771 3.229 10 O -0.974 6.974 11 O -0.992 6.992 12 N -0.982 5.982 13 C 0.093 3.907 14 C 0.234 3.766 15 H 0.056 0.944 16 C -0.146 4.146 17 C -0.516 4.516 18 H 0.083 0.917 19 C 0.079 3.921 20 N -0.889 5.889 21 Si 0.866 3.134 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.264 1.264 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.250 0.750 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 20.465 -8.290 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 O -0.092 6.092 4 C -0.063 4.063 5 N -0.199 5.199 6 C -0.146 4.146 7 C 0.080 3.920 8 N -0.889 5.889 9 S 2.781 3.219 10 O -0.958 6.958 11 O -0.976 6.976 12 N -0.824 5.824 13 C -0.054 4.054 14 C 0.131 3.869 15 H 0.073 0.927 16 C -0.206 4.206 17 C -0.557 4.557 18 H 0.101 0.899 19 C -0.125 4.125 20 N -0.526 5.526 21 Si 0.693 3.307 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.188 1.188 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.266 0.734 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.473 19.797 -7.855 21.304 hybrid contribution 0.677 1.115 0.956 1.617 sum 0.204 20.912 -6.899 22.022 Atomic orbital electron populations 1.20407 0.83601 1.04731 1.04420 1.23358 0.95108 0.84089 1.05147 1.84441 1.18489 1.36441 1.69830 1.28023 0.85591 0.91128 1.01532 1.70363 1.22656 1.10222 1.16652 1.21378 0.88255 0.96764 1.08208 1.19329 1.01356 0.87787 0.83537 1.56331 1.75504 1.43900 1.13163 1.02309 0.73718 0.72451 0.73407 1.93614 1.86908 1.84970 1.30335 1.93520 1.42311 1.86665 1.75056 1.57884 1.53829 1.47386 1.23327 1.21377 0.99771 1.02863 0.81348 1.19115 0.83653 0.93912 0.90212 0.92652 1.22230 0.98735 0.98300 1.01327 1.21134 1.39824 0.91715 1.02979 0.89938 1.24980 0.94650 0.94743 0.98171 1.69882 1.47265 1.07091 1.28336 0.87021 0.80319 0.79855 0.83545 1.18974 1.21248 1.18829 0.89329 0.90130 0.88314 0.73405 0.89065 0.89942 0.75494 0.94407 0.89601 0.91537 0.95358 0.92817 0.92844 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.22 36.00 0.37 -0.21 16 2 C -0.02 -0.23 7.39 -35.69 -0.26 -0.50 16 3 O -0.21 -2.04 10.77 5.39 0.06 -1.99 16 4 C 0.16 1.47 13.23 52.10 0.69 2.16 16 5 N -0.47 -5.83 11.29 -11.18 -0.13 -5.96 16 6 C -0.03 -0.31 6.50 -82.81 -0.54 -0.85 16 7 C 0.21 2.60 6.58 -5.19 -0.03 2.56 16 8 N -1.13 -16.50 6.05 -11.65 -0.07 -16.57 16 9 S 2.77 52.59 6.14 -107.50 -0.66 51.93 16 10 O -0.97 -22.34 16.70 -57.17 -0.95 -23.30 16 11 O -0.99 -19.40 16.21 -57.17 -0.93 -20.33 16 12 N -0.98 -19.61 3.12 -115.85 -0.36 -19.97 16 13 C 0.09 1.56 9.81 59.85 0.59 2.15 16 14 C 0.23 5.42 2.28 -69.08 -0.16 5.26 16 15 H 0.06 1.36 4.06 -51.93 -0.21 1.15 16 16 C -0.15 -2.94 9.10 37.16 0.34 -2.61 16 17 C -0.52 -14.05 8.72 -34.44 -0.30 -14.35 16 18 H 0.08 2.37 6.82 -52.49 -0.36 2.01 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 21 Si 0.87 21.89 26.99 -169.99 -4.59 17.30 16 22 H -0.26 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.26 -6.26 6.82 56.52 0.39 -5.88 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.72 7.16 -51.92 -0.37 0.35 16 28 H 0.25 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.09 1.01 6.77 -51.93 -0.35 0.66 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.41 5.66 8.64 -34.46 -0.30 5.36 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.56 6.56 -51.93 -0.34 1.22 16 34 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -35.37 331.67 -6.08 -41.45 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.81 Total: 2.50 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 0.59 Total: -4.22 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: 0.22 Total: -68.35 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.82 Total: -45.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.59 Total: 17.30 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.66 Total: 51.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.37 -6.08 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282253429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.664 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds