Wall clock time and date at job start Tue Mar 31 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34332 * 126.44339 * 2 1 4 4 N 1.34475 * 107.67100 * 179.76843 * 3 2 1 5 5 C 1.30256 * 108.70088 * 0.42582 * 4 3 2 6 6 C 1.50697 * 125.62142 * 179.83855 * 5 4 3 7 7 N 1.46499 * 109.47139 * 89.69621 * 6 5 4 8 8 S 1.65602 * 120.00018 * 165.00448 * 7 6 5 9 9 O 1.42101 * 106.40120 * 311.45412 * 8 7 6 10 10 O 1.42098 * 106.40118 * 178.53700 * 8 7 6 11 11 N 1.65602 * 107.21891 * 64.99352 * 8 7 6 12 12 C 1.46497 * 119.99851 * 269.99860 * 11 8 7 13 13 C 1.46499 * 119.99856 * 90.00572 * 11 8 7 14 14 H 1.09000 * 109.47197 * 359.97438 * 13 11 8 15 15 C 1.53005 * 109.46437 * 239.99526 * 13 11 8 16 16 C 1.50701 * 109.47260 * 120.00011 * 13 11 8 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 13 11 18 18 C 1.37871 * 119.99694 * 180.27562 * 16 13 11 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 13 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 13 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 O 1.33974 * 108.75752 * 359.57304 * 5 4 3 25 25 H 1.09001 * 109.46841 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47006 * 299.99536 * 1 2 3 27 27 H 1.09000 * 109.47104 * 59.99882 * 1 2 3 28 28 H 1.07998 * 126.16426 * 0.02891 * 3 2 1 29 29 H 1.08996 * 109.47258 * 329.68955 * 6 5 4 30 30 H 1.09005 * 109.47227 * 209.69040 * 6 5 4 31 31 H 0.97001 * 119.99875 * 344.99002 * 7 6 5 32 32 H 1.09000 * 109.47299 * 270.00392 * 12 11 8 33 33 H 1.09003 * 109.47539 * 30.00159 * 12 11 8 34 34 H 1.08994 * 109.47071 * 150.00599 * 12 11 8 35 35 H 1.08995 * 109.47438 * 299.99560 * 15 13 11 36 36 H 1.08996 * 109.47069 * 60.00420 * 15 13 11 37 37 H 1.09004 * 109.46658 * 179.97438 * 15 13 11 38 38 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5766 -0.6547 -0.0009 6 6 4.8005 -1.5339 -0.0015 7 7 5.1975 -1.8192 1.3795 8 16 6.2660 -3.0438 1.6977 9 8 5.8006 -4.1789 0.9807 10 8 6.4702 -3.0428 3.1039 11 7 7.7141 -2.6207 1.0146 12 6 8.0146 -3.0102 -0.3653 13 6 8.6945 -1.8570 1.7903 14 1 8.2970 -1.6610 2.7861 15 6 8.9800 -0.5294 1.0852 16 6 9.9712 -2.6493 1.9055 17 1 10.0447 -3.6245 1.4471 18 6 11.0431 -2.1320 2.6013 19 7 10.9535 -0.9447 3.1597 20 14 12.6230 -3.1174 2.7507 21 1 12.4681 -4.4118 2.0396 22 1 13.7431 -2.3516 2.1472 23 1 12.9137 -3.3725 4.1844 24 8 2.3075 -1.0839 -0.0006 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9822 2.1112 0.0004 29 1 5.6147 -1.0230 -0.5154 30 1 4.5762 -2.4686 -0.5155 31 1 4.8346 -1.2908 2.1075 32 1 8.5048 -3.9838 -0.3694 33 1 7.0881 -3.0676 -0.9367 34 1 8.6745 -2.2693 -0.8164 35 1 9.3775 -0.7250 0.0893 36 1 8.0567 0.0437 1.0019 37 1 9.7092 0.0391 1.6626 38 1 11.7075 -0.5809 3.6495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282985269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:03 Heat of formation + Delta-G solvation = -48.223203 kcal Electronic energy + Delta-G solvation = -23300.291301 eV Core-core repulsion = 19692.888598 eV Total energy + Delta-G solvation = -3607.402703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.53796 -36.77619 -36.21677 -35.63107 -35.29907 -34.81620 -32.59041 -32.53138 -29.10460 -28.38205 -25.63224 -25.25885 -25.10612 -22.49853 -21.32109 -20.81085 -19.00827 -17.74845 -17.31699 -16.90159 -16.69825 -16.30161 -15.68326 -15.14553 -14.87905 -14.48610 -14.19302 -13.55725 -13.51749 -13.49625 -13.24644 -13.12336 -12.80855 -12.65074 -12.07230 -11.78477 -11.73557 -11.54429 -11.45669 -11.35956 -11.24255 -10.98350 -10.79553 -10.70601 -10.46719 -10.25815 -10.04178 -9.57906 -9.23327 -8.95109 -8.45123 -8.00319 -6.06136 -4.12790 0.92665 1.31213 2.39537 2.45570 3.28969 3.37152 3.40619 3.46583 3.76827 4.04864 4.41266 4.48854 4.73914 4.79484 4.90766 5.02556 5.02922 5.22170 5.25392 5.34410 5.51067 5.59973 5.75583 5.80936 6.06943 6.10875 6.33948 6.61707 6.79514 6.80056 6.96634 7.04672 7.45746 7.52834 7.64247 7.79925 8.05535 8.28315 8.89778 9.53131 10.99615 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.003752 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.323299 B = 7461.197781 C = 7856.195352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.044 4.044 4 N -0.461 5.461 5 C 0.182 3.818 6 C 0.223 3.777 7 N -1.131 6.131 8 S 2.780 3.220 9 O -0.992 6.992 10 O -0.966 6.966 11 N -0.988 5.988 12 C 0.106 3.894 13 C 0.267 3.733 14 H 0.060 0.940 15 C -0.149 4.149 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 O -0.195 6.195 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.185 0.815 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.013 0.987 37 H 0.093 0.907 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.626 3.404 -8.569 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 C -0.184 4.184 4 N -0.190 5.190 5 C -0.026 4.026 6 C 0.095 3.905 7 N -0.890 5.890 8 S 2.789 3.211 9 O -0.975 6.975 10 O -0.950 6.950 11 N -0.831 5.831 12 C -0.040 4.040 13 C 0.164 3.836 14 H 0.077 0.923 15 C -0.209 4.209 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 O -0.081 6.081 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.202 0.798 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.250 0.750 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.111 0.889 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.102 2.906 -8.134 19.159 hybrid contribution 0.196 -0.067 0.226 0.306 sum -16.906 2.839 -7.908 18.879 Atomic orbital electron populations 1.20294 0.83891 1.04464 1.03910 1.23571 0.95186 0.84671 1.06579 1.23127 0.87708 1.00488 1.07048 1.70498 1.23077 1.09003 1.16464 1.26105 0.84130 0.90253 1.02112 1.19465 0.88528 0.97512 0.84955 1.56415 1.63916 1.56205 1.12467 1.02018 0.72550 0.73123 0.73446 1.93548 1.81173 1.47812 1.74995 1.93631 1.85178 1.86246 1.29968 1.57707 1.31734 1.70649 1.23024 1.21209 1.00016 1.01031 0.81770 1.18777 0.86765 0.88166 0.89850 0.92272 1.22125 0.99699 0.98744 1.00284 1.21364 0.97076 1.03474 1.33986 0.91839 1.24912 0.98813 0.95094 0.95114 1.69870 1.31548 1.16449 1.34966 0.86439 0.82906 0.80139 0.77896 1.19728 1.21013 1.20940 1.84436 1.17809 1.36540 1.69342 0.90279 0.89220 0.89251 0.79804 0.87238 0.87750 0.75013 0.92995 0.93377 0.90705 0.94706 0.96771 0.88894 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 36.01 0.38 0.00 16 2 C -0.05 -0.47 7.39 -35.69 -0.26 -0.73 16 3 C -0.04 -0.49 11.80 -17.77 -0.21 -0.70 16 4 N -0.46 -6.42 11.29 -11.10 -0.13 -6.54 16 5 C 0.18 2.43 7.74 -12.95 -0.10 2.33 16 6 C 0.22 2.86 6.87 -5.20 -0.04 2.82 16 7 N -1.13 -16.97 6.05 -11.66 -0.07 -17.04 16 8 S 2.78 52.98 6.09 -107.50 -0.66 52.32 16 9 O -0.99 -19.72 16.68 -57.17 -0.95 -20.68 16 10 O -0.97 -22.20 16.70 -57.17 -0.95 -23.16 16 11 N -0.99 -19.82 3.12 -115.85 -0.36 -20.18 16 12 C 0.11 1.79 9.53 59.85 0.57 2.36 16 13 C 0.27 6.45 2.62 -69.08 -0.18 6.27 16 14 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 15 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 16 C -0.52 -13.87 8.37 -34.44 -0.29 -14.15 16 17 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 18 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 19 N -0.89 -24.75 11.33 55.43 0.63 -24.13 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 O -0.19 -2.48 10.78 5.36 0.06 -2.42 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.19 7.75 -51.93 -0.40 0.78 16 31 H 0.42 5.91 8.64 -34.47 -0.30 5.61 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.64 7.79 -51.93 -0.40 0.24 16 34 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 35 H 0.03 0.73 6.66 -51.93 -0.35 0.38 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 2.33 6.08 -51.93 -0.32 2.02 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -34.00 335.04 -7.26 -41.26 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.95 Total: 2.66 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.11 Total: -3.22 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: 0.07 Total: -67.89 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.85 Total: -46.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.66 Total: 52.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.00 -7.26 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282985269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.964 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds