Wall clock time and date at job start Tue Mar 31 2020 03:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34328 * 126.44505 * 2 1 4 4 N 1.34479 * 107.66701 * 179.76853 * 3 2 1 5 5 C 1.30254 * 108.70393 * 0.42378 * 4 3 2 6 6 C 1.50694 * 125.62248 * 179.84106 * 5 4 3 7 7 N 1.46496 * 109.47433 * 89.68952 * 6 5 4 8 8 S 1.65599 * 120.00176 * 164.99923 * 7 6 5 9 9 O 1.42096 * 106.40271 * 311.46484 * 8 7 6 10 10 O 1.42104 * 106.40293 * 178.54053 * 8 7 6 11 11 N 1.65603 * 107.21785 * 65.00401 * 8 7 6 12 12 C 1.46500 * 120.00003 * 270.00182 * 11 8 7 13 13 C 1.46496 * 120.00062 * 89.99674 * 11 8 7 14 14 H 1.09001 * 109.47464 * 0.02562 * 13 11 8 15 15 C 1.53006 * 109.46995 * 120.00453 * 13 11 8 16 16 C 1.50699 * 109.47248 * 240.00138 * 13 11 8 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99908 * 180.02562 * 16 13 11 19 19 N 1.31510 * 120.00364 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99946 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47247 * 89.99769 * 20 18 16 22 22 H 1.48496 * 109.47178 * 209.99766 * 20 18 16 23 23 H 1.48504 * 109.47095 * 329.99574 * 20 18 16 24 24 O 1.33964 * 108.75840 * 359.57208 * 5 4 3 25 25 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46788 * 299.99721 * 1 2 3 27 27 H 1.09001 * 109.47180 * 59.99778 * 1 2 3 28 28 H 1.07994 * 126.16422 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46964 * 329.68815 * 6 5 4 30 30 H 1.09004 * 109.47039 * 209.69309 * 6 5 4 31 31 H 0.97005 * 120.00284 * 345.00455 * 7 6 5 32 32 H 1.08998 * 109.46877 * 269.99776 * 12 11 8 33 33 H 1.09004 * 109.46845 * 29.99796 * 12 11 8 34 34 H 1.08994 * 109.47249 * 150.00027 * 12 11 8 35 35 H 1.09001 * 109.47002 * 299.99701 * 15 13 11 36 36 H 1.08993 * 109.46955 * 60.00138 * 15 13 11 37 37 H 1.09000 * 109.47050 * 179.97438 * 15 13 11 38 38 H 0.96999 * 120.00396 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0014 7 7 5.1974 -1.8194 1.3796 8 16 6.2658 -3.0440 1.6979 9 8 5.8003 -4.1790 0.9809 10 8 6.4700 -3.0430 3.1042 11 7 7.7139 -2.6210 1.0148 12 6 8.0145 -3.0106 -0.3651 13 6 8.6943 -1.8573 1.7904 14 1 8.2971 -1.6619 2.7865 15 6 9.9905 -2.6618 1.9074 16 6 8.9757 -0.5497 1.0960 17 1 8.4740 -0.3113 0.1698 18 6 9.8736 0.3422 1.6431 19 7 10.4841 0.0521 2.7712 20 14 10.2218 1.9633 0.7827 21 1 9.2757 2.9974 1.2733 22 1 11.6145 2.3888 1.0734 23 1 10.0521 1.7924 -0.6827 24 8 2.3075 -1.0840 -0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9822 2.1111 0.0004 29 1 5.6145 -1.0232 -0.5154 30 1 4.5760 -2.4688 -0.5154 31 1 4.8345 -1.2910 2.1077 32 1 8.5046 -3.9841 -0.3691 33 1 7.0879 -3.0678 -0.9364 34 1 8.6744 -2.2697 -0.8162 35 1 9.7870 -3.6075 2.4097 36 1 10.3878 -2.8574 0.9115 37 1 10.7202 -2.0933 2.4841 38 1 11.1155 0.6798 3.1563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282985273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:06 Heat of formation + Delta-G solvation = -76.976832 kcal Electronic energy + Delta-G solvation = -23468.344091 eV Core-core repulsion = 19859.694537 eV Total energy + Delta-G solvation = -3608.649554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.41372 -38.40245 -37.89428 -36.95671 -36.73861 -35.74630 -34.49011 -33.25672 -30.90934 -29.26594 -27.22188 -26.98028 -26.09333 -23.37238 -22.63203 -22.18158 -20.51755 -19.02785 -18.63706 -18.31477 -18.11391 -17.64024 -17.15320 -16.68995 -16.05438 -15.68315 -15.26122 -15.07546 -14.87074 -14.47885 -14.26086 -14.16872 -13.82696 -13.71134 -13.45633 -13.28471 -13.24498 -13.15575 -13.11914 -12.95498 -12.72036 -12.68182 -12.44557 -12.16469 -12.10243 -11.88234 -11.58946 -11.19196 -10.72543 -10.47068 -9.78504 -9.63875 -8.07013 -6.20995 -0.44250 0.34453 1.46781 1.48821 1.52373 1.57417 1.57898 2.03805 2.47721 2.56951 2.91422 3.22165 3.41835 3.75678 3.94405 4.03692 4.09440 4.27394 4.47426 4.53928 4.66019 4.69963 4.74569 4.84818 5.00433 5.01423 5.06097 5.15406 5.18503 5.27427 5.31316 5.62003 5.65893 5.83308 5.91584 6.13231 6.31235 6.65777 6.88485 7.48696 8.97558 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.005229 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.098972 B = 5353.245909 C = 6740.817247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.037 4.037 3 C -0.066 4.066 4 N -0.488 5.488 5 C 0.163 3.837 6 C 0.220 3.780 7 N -1.120 6.120 8 S 2.804 3.196 9 O -0.997 6.997 10 O -1.012 7.012 11 N -0.994 5.994 12 C 0.093 3.907 13 C 0.272 3.728 14 H 0.024 0.976 15 C -0.138 4.138 16 C -0.527 4.527 17 H 0.072 0.928 18 C 0.017 3.983 19 N -0.918 5.918 20 Si 0.956 3.044 21 H -0.284 1.284 22 H -0.287 1.287 23 H -0.263 1.263 24 O -0.207 6.207 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.210 0.790 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.420 0.580 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.020 0.980 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 -0.363 -8.687 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.091 4.091 3 C -0.204 4.204 4 N -0.218 5.218 5 C -0.044 4.044 6 C 0.093 3.907 7 N -0.881 5.881 8 S 2.813 3.187 9 O -0.980 6.980 10 O -0.996 6.996 11 N -0.836 5.836 12 C -0.052 4.052 13 C 0.168 3.832 14 H 0.042 0.958 15 C -0.198 4.198 16 C -0.567 4.567 17 H 0.090 0.910 18 C -0.183 4.183 19 N -0.558 5.558 20 Si 0.782 3.218 21 H -0.210 1.210 22 H -0.213 1.213 23 H -0.187 1.187 24 O -0.093 6.093 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.226 0.774 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.749 -0.935 -8.259 18.698 hybrid contribution -0.057 1.222 0.197 1.239 sum -16.806 0.287 -8.062 18.642 Atomic orbital electron populations 1.20562 0.80419 1.05432 1.05916 1.24475 0.96864 0.83717 1.04023 1.23630 0.86866 1.02119 1.07820 1.70480 1.25015 1.09665 1.16676 1.25991 0.84492 0.90178 1.03751 1.19638 0.88989 0.98505 0.83528 1.55922 1.63041 1.55325 1.13861 1.01084 0.72398 0.73105 0.72127 1.93539 1.81057 1.48599 1.74833 1.93558 1.85950 1.87275 1.32835 1.57594 1.32062 1.69939 1.24005 1.21510 1.02458 1.00615 0.80611 1.18409 0.85612 0.89114 0.90056 0.95770 1.21935 1.00231 0.97214 1.00430 1.21653 1.24227 1.01640 1.09136 0.90993 1.25645 0.95776 1.01325 0.95515 1.70011 1.28774 1.37127 1.19869 0.85594 0.76872 0.79951 0.79381 1.21039 1.21335 1.18687 1.84431 1.17797 1.37585 1.69500 0.89783 0.87320 0.86893 0.77353 0.86602 0.85996 0.74636 0.92635 0.90081 0.90256 0.96114 0.93510 0.91293 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.43 71.24 0.74 0.13 16 2 C -0.04 -0.74 7.39 24.79 0.18 -0.56 16 3 C -0.07 -1.48 11.80 83.39 0.98 -0.50 16 4 N -0.49 -14.64 11.29 -303.84 -3.43 -18.07 16 5 C 0.16 4.61 7.74 88.34 0.68 5.29 16 6 C 0.22 5.93 6.87 85.63 0.59 6.52 16 7 N -1.12 -35.47 6.05 -190.80 -1.15 -36.63 16 8 S 2.80 105.61 6.10 -56.49 -0.34 105.27 16 9 O -1.00 -37.54 16.68 -128.00 -2.14 -39.68 16 10 O -1.01 -46.20 16.70 -128.00 -2.14 -48.34 16 11 N -0.99 -39.13 3.12 -520.45 -1.62 -40.75 16 12 C 0.09 2.96 9.28 127.77 1.19 4.15 16 13 C 0.27 13.20 2.62 44.25 0.12 13.32 16 14 H 0.02 1.35 6.91 -2.39 -0.02 1.33 16 15 C -0.14 -6.55 8.97 71.98 0.65 -5.91 16 16 C -0.53 -26.62 7.99 25.60 0.20 -26.41 16 17 H 0.07 3.44 7.33 -2.91 -0.02 3.42 16 18 C 0.02 0.89 5.30 84.66 0.45 1.34 16 19 N -0.92 -51.30 11.32 21.45 0.24 -51.06 16 20 Si 0.96 42.05 29.54 68.60 2.03 44.08 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 O -0.21 -5.32 10.78 -3.76 -0.04 -5.36 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.21 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.12 2.75 7.75 -2.39 -0.02 2.73 16 31 H 0.42 13.02 8.65 -96.74 -0.84 12.19 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.03 7.79 -2.38 -0.02 2.01 16 34 H 0.08 2.57 7.02 -2.39 -0.02 2.56 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 37 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 38 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -70.93 335.70 -2.57 -73.50 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.25 Total: 19.66 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.78 Total: -2.62 kcal Atomic # 7 Polarization: -140.54 SS G_CDS: -5.97 Total: -146.51 kcal Atomic # 8 Polarization: -89.06 SS G_CDS: -4.31 Total: -93.37 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 105.61 SS G_CDS: -0.34 Total: 105.27 kcal Total: -70.93 -2.57 -73.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282985273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.478 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds