Wall clock time and date at job start Tue Mar 31 2020 03:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41376 * 126.80000 * 2 1 4 4 C 1.35454 * 103.98637 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77867 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47412 * 89.99588 * 5 4 3 7 7 S 1.65593 * 119.99925 * 164.99847 * 6 5 4 8 8 O 1.42096 * 106.40460 * 311.46213 * 7 6 5 9 9 O 1.42108 * 106.40218 * 178.54273 * 7 6 5 10 10 N 1.65606 * 107.21842 * 65.00539 * 7 6 5 11 11 C 1.46497 * 119.99739 * 269.99739 * 10 7 6 12 12 C 1.46497 * 120.00188 * 89.99816 * 10 7 6 13 13 H 1.09007 * 109.47078 * 359.97438 * 12 10 7 14 14 C 1.53000 * 109.47021 * 240.00233 * 12 10 7 15 15 C 1.50694 * 109.47115 * 120.00014 * 12 10 7 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.34037 * 106.44460 * 0.23703 * 4 3 2 24 24 N 1.20928 * 111.56708 * 359.56876 * 23 4 3 25 25 H 1.09001 * 109.47245 * 90.00258 * 1 2 3 26 26 H 1.09000 * 109.47322 * 210.00250 * 1 2 3 27 27 H 1.09003 * 109.47319 * 330.00423 * 1 2 3 28 28 H 1.08007 * 128.01073 * 0.02789 * 3 2 1 29 29 H 1.09006 * 109.46596 * 329.99499 * 5 4 3 30 30 H 1.09004 * 109.47086 * 209.99799 * 5 4 3 31 31 H 0.97005 * 119.99538 * 345.00608 * 6 5 4 32 32 H 1.09001 * 109.46905 * 270.00036 * 11 10 7 33 33 H 1.09005 * 109.47144 * 29.99977 * 11 10 7 34 34 H 1.08993 * 109.47302 * 150.00165 * 11 10 7 35 35 H 1.08998 * 109.47089 * 59.99825 * 14 12 10 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 37 37 H 1.09002 * 109.47106 * 299.99878 * 14 12 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 7 5.3241 1.6171 1.3795 7 16 6.8765 2.0977 1.6975 8 8 7.7255 1.2123 0.9804 9 8 6.9586 2.2848 3.1038 10 7 7.0763 3.5931 1.0144 11 6 7.5540 3.7100 -0.3656 12 6 6.7754 4.7989 1.7900 13 1 6.4352 4.5148 2.7859 14 6 5.6772 5.5978 1.0852 15 6 8.0170 5.6450 1.9050 16 1 8.9384 5.3172 1.4467 17 6 7.9772 6.8373 2.5965 18 7 6.8554 7.2363 3.1551 19 14 9.5165 7.8857 2.7397 20 1 9.2115 9.1082 3.5259 21 1 10.5821 7.1099 3.4236 22 1 9.9796 8.2731 1.3830 23 8 3.4538 -0.7253 -0.0062 24 7 2.2868 -1.0423 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 2.0709 2.1744 0.0004 29 1 4.7647 2.3210 -0.5154 30 1 5.6657 0.7858 -0.5155 31 1 4.6940 1.4993 2.1076 32 1 8.6427 3.7637 -0.3698 33 1 7.2309 2.8397 -0.9369 34 1 7.1439 4.6135 -0.8167 35 1 4.7792 4.9857 1.0020 36 1 5.4530 6.4947 1.6625 37 1 6.0169 5.8818 0.0892 38 1 6.8275 8.0749 3.6419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283068165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:57 Heat of formation + Delta-G solvation = -13.034818 kcal Electronic energy + Delta-G solvation = -23336.682595 eV Core-core repulsion = 19730.805776 eV Total energy + Delta-G solvation = -3605.876820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.10392 -36.79935 -36.27730 -35.83291 -35.30664 -34.93692 -32.62412 -31.65467 -29.15704 -28.91430 -26.30230 -25.64020 -25.16608 -23.25156 -20.91469 -20.47323 -19.00185 -17.81003 -17.78828 -17.15892 -16.85705 -16.38142 -15.77416 -15.19541 -14.60729 -14.55282 -14.25621 -13.63321 -13.53578 -13.35426 -13.28121 -13.16477 -12.85732 -12.59805 -12.09997 -11.80967 -11.67430 -11.53381 -11.40390 -11.39120 -11.28664 -11.00437 -10.83589 -10.53962 -10.32814 -10.21543 -10.06766 -9.69786 -9.58256 -9.30028 -8.48450 -8.05289 -6.10452 -4.17070 0.91401 1.36316 2.01102 2.84847 3.28783 3.33354 3.36270 3.44250 3.97177 4.03477 4.15877 4.37966 4.75130 4.83641 4.92194 5.05241 5.18493 5.19897 5.21304 5.32659 5.47802 5.53383 5.56972 5.73815 5.88315 6.06159 6.30342 6.56438 6.69499 6.72969 6.92996 6.98680 7.40515 7.58539 7.74640 7.99820 8.06376 8.23452 8.84962 9.48973 10.95208 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.003881 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.998936 B = 7213.106638 C = 7773.221647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.212 4.212 4 C -0.034 4.034 5 C 0.203 3.797 6 N -1.132 6.132 7 S 2.779 3.221 8 O -0.991 6.991 9 O -0.967 6.967 10 N -0.989 5.989 11 C 0.106 3.894 12 C 0.268 3.732 13 H 0.060 0.940 14 C -0.148 4.148 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.277 1.277 23 O 0.106 5.894 24 N -0.364 5.364 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.010 0.990 36 H 0.093 0.907 37 H 0.034 0.966 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 -9.040 -8.557 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.235 4.235 4 C -0.099 4.099 5 C 0.076 3.924 6 N -0.891 5.891 7 S 2.788 3.212 8 O -0.974 6.974 9 O -0.951 6.951 10 N -0.832 5.832 11 C -0.040 4.040 12 C 0.165 3.835 13 H 0.077 0.923 14 C -0.208 4.208 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.202 1.202 23 O 0.038 5.962 24 N -0.068 5.068 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.194 0.806 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.249 0.751 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.141 -10.703 -8.120 16.833 hybrid contribution 0.091 1.714 0.203 1.728 sum -10.050 -8.989 -7.918 15.636 Atomic orbital electron populations 1.20168 0.85831 1.03883 1.03377 1.23649 0.99157 0.88826 1.03071 1.22566 0.90975 1.01485 1.08462 1.24426 0.98065 0.83816 1.03561 1.19578 0.90209 0.98065 0.84560 1.56418 1.34048 1.85975 1.12612 1.02038 0.72700 0.73064 0.73412 1.93552 1.64266 1.64673 1.74954 1.93633 1.85368 1.86105 1.30025 1.57718 1.79404 1.23091 1.22988 1.21204 0.99784 1.01242 0.81788 1.18751 0.94818 0.80100 0.89841 0.92274 1.22126 0.95988 1.02291 1.00361 1.21292 0.95924 1.04558 1.34323 0.91940 1.24905 0.96383 0.97512 0.95043 1.69843 1.25528 1.22570 1.34963 0.86547 0.83179 0.79467 0.78152 1.21237 1.20143 1.20234 1.84855 1.21493 1.22738 1.67084 1.73869 0.89375 1.24226 1.19350 0.90152 0.90590 0.89856 0.80619 0.88097 0.88123 0.75106 0.93031 0.93314 0.90802 0.97047 0.88862 0.94700 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.47 36.00 0.38 -0.16 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -2.14 11.06 -39.38 -0.44 -2.57 16 4 C -0.03 -0.38 6.89 -35.30 -0.24 -0.62 16 5 C 0.20 2.23 6.81 -5.19 -0.04 2.20 16 6 N -1.13 -15.37 6.05 -11.65 -0.07 -15.44 16 7 S 2.78 50.87 6.09 -107.50 -0.66 50.22 16 8 O -0.99 -19.33 16.68 -57.17 -0.95 -20.28 16 9 O -0.97 -21.65 16.70 -57.17 -0.95 -22.61 16 10 N -0.99 -18.95 3.12 -115.86 -0.36 -19.31 16 11 C 0.11 1.71 9.53 59.85 0.57 2.28 16 12 C 0.27 6.20 2.62 -69.09 -0.18 6.02 16 13 H 0.06 1.53 6.91 -51.92 -0.36 1.17 16 14 C -0.15 -3.12 8.95 37.16 0.33 -2.79 16 15 C -0.52 -13.58 8.37 -34.44 -0.29 -13.87 16 16 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.13 11.32 55.43 0.63 -23.50 16 19 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 O 0.11 1.37 11.20 17.18 0.19 1.56 16 24 N -0.36 -4.76 12.07 33.42 0.40 -4.35 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.05 7.75 -51.93 -0.40 0.65 16 31 H 0.42 5.18 8.64 -34.47 -0.30 4.88 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 34 H 0.07 1.14 6.43 -51.93 -0.33 0.80 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 37 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.54 334.54 -7.31 -39.85 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.95 Total: 1.55 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.60 Total: -8.40 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.60 Total: -62.61 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.72 Total: -41.33 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -0.66 Total: 50.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.54 -7.31 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283068165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.813 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds