Wall clock time and date at job start Tue Mar 31 2020 03:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41383 * 126.80123 * 2 1 4 4 C 1.35447 * 103.98543 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.77827 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47212 * 89.99704 * 5 4 3 7 7 S 1.65602 * 119.99612 * 164.72359 * 6 5 4 8 8 O 1.42104 * 106.40175 * 178.81816 * 7 6 5 9 9 O 1.42095 * 106.40656 * 311.73868 * 7 6 5 10 10 N 1.65599 * 107.21657 * 65.28266 * 7 6 5 11 11 C 1.46504 * 119.99877 * 269.99379 * 10 7 6 12 12 C 1.46494 * 120.00381 * 89.99744 * 10 7 6 13 13 H 1.08998 * 109.47249 * 0.02562 * 12 10 7 14 14 C 1.53002 * 109.47448 * 120.00110 * 12 10 7 15 15 C 1.50701 * 109.47110 * 240.00260 * 12 10 7 16 16 H 1.08000 * 120.00188 * 359.97438 * 15 12 10 17 17 C 1.37881 * 120.00123 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99983 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00045 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47159 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46893 * 120.00092 * 19 17 15 22 22 H 1.48504 * 109.47102 * 239.99521 * 19 17 15 23 23 O 1.34042 * 106.44972 * 0.24442 * 4 3 2 24 24 N 1.20923 * 111.56143 * 359.56354 * 23 4 3 25 25 H 1.08994 * 109.47349 * 89.99617 * 1 2 3 26 26 H 1.09007 * 109.46685 * 209.99796 * 1 2 3 27 27 H 1.08996 * 109.46801 * 329.99091 * 1 2 3 28 28 H 1.07994 * 128.00760 * 0.05003 * 3 2 1 29 29 H 1.08996 * 109.47013 * 330.00010 * 5 4 3 30 30 H 1.08999 * 109.47128 * 210.00223 * 5 4 3 31 31 H 0.97001 * 120.00384 * 345.00836 * 6 5 4 32 32 H 1.09000 * 109.46746 * 89.99763 * 11 10 7 33 33 H 1.08995 * 109.47307 * 209.99778 * 11 10 7 34 34 H 1.09005 * 109.46998 * 330.00254 * 11 10 7 35 35 H 1.08995 * 109.47436 * 59.99676 * 14 12 10 36 36 H 1.08994 * 109.47366 * 180.02562 * 14 12 10 37 37 H 1.09000 * 109.46793 * 300.00032 * 14 12 10 38 38 H 0.96996 * 120.00632 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9022 1.3696 -0.0014 6 7 5.3241 1.6170 1.3795 7 16 6.8785 2.0910 1.6980 8 8 6.9621 2.2734 3.1048 9 8 7.7239 1.2048 0.9777 10 7 7.0833 3.5877 1.0196 11 6 7.5606 3.7074 -0.3603 12 6 6.7872 4.7922 1.7992 13 1 6.4475 4.5063 2.7946 14 6 8.0510 5.6464 1.9179 15 6 5.7080 5.5851 1.1081 16 1 5.2852 5.2279 0.1807 17 6 5.2610 6.7673 1.6593 18 7 5.7761 7.2026 2.7883 19 14 3.9237 7.7506 0.8023 20 1 3.5153 7.0509 -0.4421 21 1 2.7514 7.8826 1.7042 22 1 4.4419 9.1004 0.4634 23 8 3.4538 -0.7253 -0.0064 24 7 2.2869 -1.0423 -0.0007 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 2.0709 2.1743 0.0007 29 1 4.7648 2.3210 -0.5153 30 1 5.6657 0.7859 -0.5156 31 1 4.6941 1.4992 2.1077 32 1 6.7085 3.7168 -1.0400 33 1 8.1239 4.6339 -0.4709 34 1 8.2046 2.8602 -0.5968 35 1 8.3911 5.9323 0.9226 36 1 7.8308 6.5423 2.4983 37 1 8.8315 5.0728 2.4177 38 1 5.4614 8.0341 3.1763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283068171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:00 Heat of formation + Delta-G solvation = -14.576376 kcal Electronic energy + Delta-G solvation = -23515.968189 eV Core-core repulsion = 19910.024522 eV Total energy + Delta-G solvation = -3605.943667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.00522 -36.81579 -36.24636 -35.73985 -35.34396 -34.84227 -32.66549 -31.55147 -29.13198 -28.82690 -26.20099 -25.60077 -25.19995 -23.14603 -20.86895 -20.38900 -19.01841 -17.72807 -17.69996 -17.12949 -16.70493 -16.42541 -15.84842 -15.18535 -14.57111 -14.42655 -14.19758 -13.57336 -13.51471 -13.35838 -13.20071 -13.09769 -12.85254 -12.51653 -12.03764 -11.85164 -11.68288 -11.55594 -11.42171 -11.30200 -11.21543 -11.07497 -10.88809 -10.49554 -10.31849 -10.12206 -10.10753 -9.59569 -9.53575 -9.24067 -8.54620 -8.04521 -6.15160 -4.23965 0.98624 1.43995 2.11078 2.94996 3.18397 3.27131 3.28415 3.44792 4.04609 4.06565 4.26679 4.29703 4.83702 4.92325 4.98077 5.15532 5.16967 5.26757 5.31621 5.45433 5.59542 5.65014 5.68092 5.81740 5.98743 6.10413 6.27233 6.58020 6.78725 6.81601 7.02657 7.08611 7.44023 7.57255 7.72670 7.98642 8.15544 8.19865 8.79128 9.42692 10.89887 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.005607 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.371314 B = 4992.733799 C = 6605.269409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.211 4.211 4 C -0.033 4.033 5 C 0.205 3.795 6 N -1.126 6.126 7 S 2.784 3.216 8 O -0.975 6.975 9 O -0.995 6.995 10 N -0.988 5.988 11 C 0.096 3.904 12 C 0.267 3.733 13 H 0.060 0.940 14 C -0.146 4.146 15 C -0.524 4.524 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 O 0.104 5.896 24 N -0.366 5.366 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.177 0.823 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.416 0.584 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.093 0.907 37 H 0.013 0.987 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 -8.944 -6.897 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C -0.233 4.233 4 C -0.098 4.098 5 C 0.078 3.922 6 N -0.885 5.885 7 S 2.792 3.208 8 O -0.959 6.959 9 O -0.978 6.978 10 N -0.832 5.832 11 C -0.051 4.051 12 C 0.164 3.836 13 H 0.077 0.923 14 C -0.206 4.206 15 C -0.564 4.564 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.524 5.524 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 O 0.037 5.963 24 N -0.070 5.070 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.195 0.805 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.250 0.750 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.032 0.968 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.173 -10.607 -6.444 13.445 hybrid contribution -1.504 1.779 -0.333 2.353 sum -6.676 -8.827 -6.777 12.978 Atomic orbital electron populations 1.20163 0.85896 1.03846 1.03332 1.23642 0.99116 0.88860 1.03099 1.22604 0.91000 1.01564 1.08132 1.24434 0.98154 0.83675 1.03577 1.19568 0.90021 0.98160 0.84477 1.56198 1.33621 1.85994 1.12686 1.01813 0.72694 0.73038 0.73227 1.93613 1.85695 1.86341 1.30254 1.93541 1.64836 1.64540 1.74895 1.57688 1.79492 1.23122 1.22850 1.21325 0.98708 1.02962 0.82078 1.18758 0.93660 0.80119 0.91072 0.92271 1.22069 0.96300 1.02188 1.00030 1.21391 1.19871 1.06297 1.08846 0.91899 1.24934 0.96716 0.97338 0.94914 1.69883 1.42116 1.22074 1.18343 0.86489 0.81627 0.80032 0.79463 1.19831 1.21049 1.20989 1.84841 1.21473 1.22811 1.67196 1.73849 0.89404 1.24243 1.19508 0.90196 0.90644 0.89851 0.80526 0.87846 0.88293 0.75043 0.93832 0.90442 0.91860 0.94762 0.88845 0.96772 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.47 36.01 0.38 -0.25 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.21 -2.46 11.06 -39.38 -0.44 -2.90 16 4 C -0.03 -0.42 6.88 -35.30 -0.24 -0.66 16 5 C 0.21 2.53 6.81 -5.19 -0.04 2.50 16 6 N -1.13 -16.55 6.05 -11.66 -0.07 -16.62 16 7 S 2.78 50.76 6.15 -107.50 -0.66 50.10 16 8 O -0.97 -21.24 16.70 -57.17 -0.95 -22.19 16 9 O -0.99 -18.92 16.20 -57.17 -0.93 -19.84 16 10 N -0.99 -18.87 3.12 -115.85 -0.36 -19.24 16 11 C 0.10 1.53 9.90 59.85 0.59 2.12 16 12 C 0.27 6.16 2.62 -69.08 -0.18 5.98 16 13 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 14 C -0.15 -3.33 8.95 37.16 0.33 -3.00 16 15 C -0.52 -12.69 8.37 -34.44 -0.29 -12.97 16 16 H 0.06 1.46 7.65 -52.49 -0.40 1.06 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -23.56 11.32 55.43 0.63 -22.94 16 19 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 O 0.10 1.45 11.20 17.17 0.19 1.64 16 24 N -0.37 -5.12 12.07 33.43 0.40 -4.72 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.12 7.74 -51.93 -0.40 0.72 16 31 H 0.42 5.73 8.64 -34.47 -0.30 5.43 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.26 6.43 -51.93 -0.33 0.92 16 34 H 0.06 0.92 7.02 -51.93 -0.36 0.55 16 35 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 36 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -31.05 333.69 -7.23 -38.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.91 Total: 4.13 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.58 Total: -8.13 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.60 Total: -63.51 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.69 Total: -40.40 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 50.76 SS G_CDS: -0.66 Total: 50.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.05 -7.23 -38.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283068171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.709 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds