Wall clock time and date at job start Tue Mar 31 2020 03:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 113.99829 * 2 1 4 4 C 1.53003 * 109.46740 * 179.97438 * 3 2 1 5 5 S 1.81407 * 109.46926 * 179.97438 * 4 3 2 6 6 O 1.42095 * 110.53935 * 68.37444 * 5 4 3 7 7 O 1.42102 * 110.54060 * 291.62450 * 5 4 3 8 8 N 1.65596 * 104.44657 * 179.97438 * 5 4 3 9 9 C 1.39992 * 120.00296 * 65.00478 * 8 5 4 10 10 C 1.40432 * 125.97845 * 180.32206 * 9 8 5 11 11 C 1.35242 * 107.86029 * 180.16146 * 10 9 8 12 12 C 1.50703 * 126.06710 * 179.84798 * 11 10 9 13 13 N 1.34960 * 107.86379 * 359.58421 * 11 10 9 14 14 C 1.46508 * 125.97122 * 180.22644 * 13 11 10 15 15 C 1.50698 * 109.46766 * 90.00244 * 14 13 11 16 16 H 1.08000 * 120.00464 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99624 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00517 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47373 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47442 * 119.99814 * 19 17 15 22 22 H 1.48499 * 109.47189 * 239.99604 * 19 17 15 23 23 N 1.31220 * 125.97424 * 0.02562 * 9 8 5 24 24 H 1.08999 * 109.46685 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46922 * 300.00469 * 1 2 3 26 26 H 1.08996 * 109.46637 * 60.00162 * 1 2 3 27 27 H 1.08992 * 109.47531 * 59.99639 * 3 2 1 28 28 H 1.09001 * 109.47075 * 299.99557 * 3 2 1 29 29 H 1.09003 * 109.47339 * 60.00086 * 4 3 2 30 30 H 1.08994 * 109.47376 * 299.99431 * 4 3 2 31 31 H 0.97008 * 120.00057 * 244.99624 * 8 5 4 32 32 H 1.07997 * 126.06679 * 0.02562 * 10 9 8 33 33 H 1.09002 * 109.47152 * 269.69014 * 12 11 10 34 34 H 1.09001 * 109.46980 * 149.69114 * 12 11 10 35 35 H 1.09004 * 109.47113 * 29.69095 * 12 11 10 36 36 H 1.08996 * 109.46980 * 210.00193 * 14 13 11 37 37 H 1.08996 * 109.47109 * 330.00438 * 14 13 11 38 38 H 0.96998 * 120.00630 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2734 2.8418 -0.0001 6 8 4.0277 3.4975 1.2363 7 8 4.0286 3.4960 -1.2376 8 7 5.9064 2.5670 0.0014 9 6 6.5125 1.9447 -1.0964 10 6 7.8787 1.6462 -1.2249 11 6 8.0624 1.0529 -2.4263 12 6 9.3752 0.5667 -2.9842 13 7 6.8605 0.9683 -3.0343 14 6 6.6030 0.3876 -4.3545 15 6 6.3004 -1.0813 -4.2068 16 1 6.3003 -1.5368 -3.2276 17 6 6.0246 -1.8438 -5.3219 18 7 6.0252 -1.2893 -6.5144 19 14 5.6502 -3.6647 -5.1389 20 1 5.7129 -4.0413 -3.7037 21 1 4.2906 -3.9460 -5.6659 22 1 6.6499 -4.4548 -5.9015 23 7 5.9026 1.5335 -2.1831 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8575 0.6435 -0.8891 30 1 3.8568 0.6439 0.8908 31 1 6.4430 2.8373 0.7630 32 1 8.6466 1.8554 -0.4950 33 1 9.8470 1.3676 -3.5535 34 1 9.1982 -0.2878 -3.6374 35 1 10.0299 0.2686 -2.1653 36 1 5.7509 0.8899 -4.8124 37 1 7.4824 0.5157 -4.9856 38 1 5.8308 -1.8257 -7.2988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330595190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:43 Heat of formation + Delta-G solvation = -43.353425 kcal Electronic energy + Delta-G solvation = -23050.675829 eV Core-core repulsion = 19443.484295 eV Total energy + Delta-G solvation = -3607.191533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.66015 -38.05829 -37.10305 -35.96681 -35.38127 -33.35393 -32.01107 -31.43601 -30.81990 -26.82077 -26.66943 -26.41826 -23.56347 -23.12424 -20.79256 -20.05250 -18.63868 -17.53209 -17.11136 -16.74238 -16.54636 -16.24598 -15.82656 -15.42967 -15.03068 -14.87998 -14.57115 -14.25752 -13.65532 -13.23203 -12.87232 -12.69532 -12.56544 -12.33123 -12.18727 -12.06677 -11.92494 -11.81761 -11.71251 -11.54880 -11.49959 -11.28350 -10.95350 -10.88264 -10.69056 -10.31317 -9.97305 -9.86980 -9.66222 -8.69348 -8.20793 -7.69591 -6.30431 -4.38472 0.16278 2.42595 2.58526 3.17346 3.23839 3.25853 3.29898 3.43420 3.53531 3.94268 4.25637 4.28299 4.52527 4.71757 4.91193 4.99552 5.05536 5.17430 5.20537 5.24501 5.43457 5.52954 5.69702 5.80071 5.95262 6.03708 6.07505 6.21880 6.49677 6.70345 6.93040 6.96428 7.09647 7.31280 7.60930 7.82085 7.89928 8.40509 8.68162 9.28387 10.77138 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005457 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.117637 B = 5129.736508 C = 6994.482487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.079 3.921 4 C -0.631 4.631 5 S 2.620 3.380 6 O -0.959 6.959 7 O -0.924 6.924 8 N -1.012 6.012 9 C 0.279 3.721 10 C -0.308 4.308 11 C 0.110 3.890 12 C -0.092 4.092 13 N -0.309 5.309 14 C 0.255 3.745 15 C -0.538 4.538 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.281 1.281 23 N -0.323 5.323 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.431 0.569 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 4.352 12.577 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.297 6.297 3 C 0.001 3.999 4 C -0.759 4.759 5 S 2.711 3.289 6 O -0.950 6.950 7 O -0.914 6.914 8 N -0.766 5.766 9 C 0.024 3.976 10 C -0.342 4.342 11 C -0.023 4.023 12 C -0.150 4.150 13 N -0.090 5.090 14 C 0.138 3.862 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.206 1.206 23 N -0.154 5.154 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.156 0.844 31 H 0.267 0.733 32 H 0.158 0.842 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.163 4.805 11.508 12.866 hybrid contribution 0.650 -1.359 0.783 1.698 sum -2.513 3.446 12.291 13.010 Atomic orbital electron populations 1.22833 0.80692 1.03212 1.00285 1.87978 1.19909 1.26346 1.95424 1.22000 0.89769 0.86754 1.01425 1.30708 1.05171 1.26175 1.13890 1.04818 0.73239 0.76496 0.74345 1.93606 1.83728 1.71953 1.45671 1.93663 1.82933 1.70375 1.44416 1.52591 1.27000 1.72748 1.24278 1.18597 0.92373 0.98158 0.88463 1.20569 0.94639 1.18153 1.00792 1.20954 0.89750 0.98519 0.93097 1.20433 0.90882 1.02115 1.01591 1.49009 1.02278 1.41891 1.15860 1.19801 0.99421 0.93786 0.73227 1.21334 1.49803 0.92358 0.94197 0.91575 1.24923 0.94592 0.99416 0.94779 1.69923 1.47925 1.36665 0.98185 0.86315 0.78192 0.83777 0.78487 1.19543 1.20616 1.20636 1.77318 1.15302 1.21527 1.01206 0.89220 0.93872 0.93525 0.92032 0.91432 0.82497 0.84405 0.73277 0.84185 0.90774 0.89604 0.90467 0.92579 0.92530 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -5.46 10.70 -35.23 -0.38 -5.84 16 3 C 0.08 1.05 5.95 37.16 0.22 1.27 16 4 C -0.63 -8.91 6.37 37.16 0.24 -8.67 16 5 S 2.62 39.21 5.21 -107.50 -0.56 38.65 16 6 O -0.96 -14.68 18.08 -57.54 -1.04 -15.72 16 7 O -0.92 -17.57 17.30 -57.54 -1.00 -18.56 16 8 N -1.01 -14.59 5.81 31.39 0.18 -14.41 16 9 C 0.28 5.12 7.59 -154.55 -1.17 3.95 16 10 C -0.31 -5.23 10.74 -39.82 -0.43 -5.65 16 11 C 0.11 2.05 6.92 -82.28 -0.57 1.48 16 12 C -0.09 -1.35 9.89 36.01 0.36 -1.00 16 13 N -0.31 -6.89 3.59 -58.33 -0.21 -7.10 16 14 C 0.25 6.29 5.81 -5.19 -0.03 6.26 16 15 C -0.54 -14.24 9.39 -34.44 -0.32 -14.57 16 16 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 19 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 N -0.32 -7.08 10.90 31.41 0.34 -6.74 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.16 2.62 7.41 -51.92 -0.38 2.24 16 30 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.43 4.59 8.92 -34.47 -0.31 4.29 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.40 7.71 -51.93 -0.40 1.00 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.37 7.65 -51.93 -0.40 0.97 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -34.18 344.00 -7.72 -41.89 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.26 Total: 4.63 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.70 Total: -13.87 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 1.05 Total: -51.98 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.41 Total: -40.12 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 39.21 SS G_CDS: -0.56 Total: 38.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.18 -7.72 -41.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330595190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.460 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds