Wall clock time and date at job start Tue Mar 31 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31137 * 126.54899 * 2 1 4 4 C 1.34494 * 105.61598 * 180.12132 * 3 2 1 5 5 C 1.50692 * 126.28790 * 179.90912 * 4 3 2 6 6 C 1.52995 * 109.47603 * 59.71111 * 5 4 3 7 7 C 1.53003 * 109.46974 * 299.71047 * 5 4 3 8 8 N 1.46505 * 109.46973 * 179.71360 * 5 4 3 9 9 S 1.65596 * 120.00105 * 277.57073 * 8 5 4 10 10 O 1.42098 * 104.27660 * 176.03598 * 9 8 5 11 11 O 1.42097 * 104.27786 * 303.89466 * 9 8 5 12 12 C 1.81399 * 104.44600 * 59.96504 * 9 8 5 13 13 C 1.53003 * 109.47386 * 184.02788 * 12 9 8 14 14 C 1.50700 * 109.47465 * 179.97438 * 13 12 9 15 15 H 1.07993 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99824 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99977 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00247 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46846 * 89.99735 * 18 16 14 20 20 H 1.48496 * 109.47037 * 209.99634 * 18 16 14 21 21 H 1.48491 * 109.47133 * 330.00130 * 18 16 14 22 22 N 1.29946 * 107.41988 * 359.64114 * 4 3 2 23 23 O 1.21294 * 110.25609 * 0.22989 * 22 4 3 24 24 H 1.08993 * 109.46634 * 180.24906 * 1 2 3 25 25 H 1.08997 * 109.47317 * 300.25125 * 1 2 3 26 26 H 1.09003 * 109.46668 * 60.25270 * 1 2 3 27 27 H 1.08998 * 109.47684 * 173.62666 * 6 5 4 28 28 H 1.08996 * 109.47428 * 293.63258 * 6 5 4 29 29 H 1.09005 * 109.47096 * 53.62877 * 6 5 4 30 30 H 1.08998 * 109.47302 * 300.00198 * 7 5 4 31 31 H 1.08998 * 109.47358 * 60.00164 * 7 5 4 32 32 H 1.09001 * 109.47067 * 180.02562 * 7 5 4 33 33 H 0.97006 * 119.99786 * 97.57692 * 8 5 4 34 34 H 1.09005 * 109.47276 * 304.02454 * 12 9 8 35 35 H 1.09003 * 109.47631 * 64.02675 * 12 9 8 36 36 H 1.08997 * 109.46835 * 300.00329 * 13 12 9 37 37 H 1.09003 * 109.46828 * 59.99395 * 13 12 9 38 38 H 0.97006 * 120.00472 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5730 -0.0027 5 6 4.8111 1.3888 -0.0058 6 6 4.8489 2.2769 1.2394 7 6 4.8500 2.2658 -1.2590 8 7 5.9695 0.4919 -0.0013 9 16 6.5079 -0.1581 1.4234 10 8 7.5605 -1.0302 1.0351 11 8 6.7585 0.9697 2.2506 12 6 5.0945 -1.1063 2.0509 13 6 5.4361 -1.6805 3.4273 14 6 4.2617 -2.4677 3.9489 15 1 3.3615 -2.5498 3.3580 16 6 4.3365 -3.0830 5.1805 17 7 3.3114 -3.7695 5.6359 18 14 5.8934 -2.9403 6.2029 19 1 5.8007 -1.7469 7.0817 20 1 6.0510 -4.1585 7.0373 21 1 7.0660 -2.8019 5.3024 22 7 3.4645 -0.7240 0.0035 23 8 2.3030 -1.0735 0.0051 24 1 -0.3632 -1.0276 0.0045 25 1 -0.3634 0.5177 0.8877 26 1 -0.3633 0.5099 -0.8923 27 1 5.8132 2.7819 1.2965 28 1 4.0530 3.0192 1.1807 29 1 4.7076 1.6623 2.1285 30 1 4.8231 1.6331 -2.1462 31 1 3.9881 2.9331 -1.2624 32 1 5.7666 2.8556 -1.2614 33 1 6.4212 0.2789 -0.8330 34 1 4.2267 -0.4520 2.1354 35 1 4.8693 -1.9213 1.3630 36 1 6.3038 -2.3347 3.3428 37 1 5.6613 -0.8655 4.1153 38 1 3.3642 -4.2028 6.5023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330692038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:32 Heat of formation + Delta-G solvation = 1.464812 kcal Electronic energy + Delta-G solvation = -24264.284110 eV Core-core repulsion = 20659.036041 eV Total energy + Delta-G solvation = -3605.248069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.59332 -38.31910 -36.64726 -35.60967 -35.33315 -33.98379 -33.07506 -31.46375 -30.70285 -28.90687 -27.63572 -25.89788 -24.76514 -22.68103 -21.33685 -20.78945 -18.93129 -18.16517 -17.61069 -17.38494 -17.00496 -16.32333 -15.61804 -15.32876 -14.68190 -14.32971 -14.26303 -13.72022 -13.62778 -13.54288 -13.34590 -12.99362 -12.77434 -12.44058 -12.24515 -12.04205 -11.87698 -11.84007 -11.60314 -11.57633 -11.43459 -11.25204 -11.20593 -10.95182 -10.76659 -10.40361 -10.25742 -10.01890 -9.74356 -9.54191 -9.22733 -8.64501 -6.14815 -4.15229 0.67278 1.18861 2.17379 2.82299 2.84973 3.27075 3.34235 3.39063 3.45946 3.97133 4.10783 4.37208 4.52559 4.54768 4.69166 4.97369 5.08050 5.12174 5.16865 5.17169 5.36200 5.47961 5.50884 5.56809 5.67396 5.68129 5.75056 5.86695 5.92006 6.06166 6.28238 6.36218 6.85837 6.90321 6.97770 7.56773 8.18081 8.39620 8.86799 9.45101 10.97640 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.006592 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.123416 B = 4246.740795 C = 5714.264162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.177 3.823 3 N -0.474 5.474 4 C 0.140 3.860 5 C 0.273 3.727 6 C -0.169 4.169 7 C -0.141 4.141 8 N -1.109 6.109 9 S 2.586 3.414 10 O -0.966 6.966 11 O -0.961 6.961 12 C -0.573 4.573 13 C -0.005 4.005 14 C -0.514 4.514 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.868 3.132 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.262 1.262 22 N -0.362 5.362 23 O 0.090 5.910 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.417 0.583 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.031 0.969 37 H 0.027 0.973 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 11.763 -15.094 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.043 4.043 3 N -0.208 5.208 4 C -0.135 4.135 5 C 0.181 3.819 6 C -0.228 4.228 7 C -0.200 4.200 8 N -0.865 5.865 9 S 2.684 3.316 10 O -0.956 6.956 11 O -0.951 6.951 12 C -0.706 4.706 13 C -0.045 4.045 14 C -0.553 4.553 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.695 3.305 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 N -0.067 5.067 23 O 0.028 5.972 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.448 11.753 -14.427 18.768 hybrid contribution -0.050 -0.552 0.186 0.585 sum -2.499 11.201 -14.241 18.289 Atomic orbital electron populations 1.20385 0.80295 1.05811 1.05441 1.28830 0.98981 0.80634 0.95877 1.71726 0.99587 1.28879 1.20644 1.26357 0.95798 0.88798 1.02535 1.18197 0.77198 0.86591 0.99878 1.22559 1.05193 1.00378 0.94659 1.22007 1.04069 0.99310 0.94602 1.55832 1.41452 1.62001 1.27178 1.05759 0.77115 0.75237 0.73490 1.93552 1.53110 1.67673 1.81302 1.93579 1.84606 1.49382 1.67545 1.30405 1.16502 1.13504 1.10215 1.19422 0.99569 0.96941 0.88519 1.20806 0.99664 1.31406 1.03435 0.90539 1.24966 0.96260 0.94480 0.97335 1.69879 1.30266 1.33572 1.19686 0.86938 0.84442 0.78226 0.80930 1.19701 1.20723 1.18682 1.74743 0.97572 1.15188 1.19204 1.85350 1.11297 1.35592 1.64941 0.88361 0.87750 0.88077 0.88485 0.89926 0.90998 0.91882 0.89972 0.90235 0.74842 0.87049 0.84524 0.95081 0.95448 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.18 2.12 8.51 -13.05 -0.11 2.01 16 3 N -0.47 -6.32 11.55 -9.87 -0.11 -6.43 16 4 C 0.14 2.04 5.16 -156.38 -0.81 1.23 16 5 C 0.27 3.56 1.12 -132.97 -0.15 3.41 16 6 C -0.17 -2.29 6.99 37.15 0.26 -2.04 16 7 C -0.14 -1.32 8.63 37.16 0.32 -1.00 16 8 N -1.11 -15.53 5.17 -0.40 0.00 -15.54 16 9 S 2.59 47.88 5.00 -107.50 -0.54 47.34 16 10 O -0.97 -20.28 18.08 -57.54 -1.04 -21.32 16 11 O -0.96 -19.01 14.45 -57.54 -0.83 -19.84 16 12 C -0.57 -11.86 3.94 37.16 0.15 -11.72 16 13 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 14 C -0.51 -14.78 9.66 -34.44 -0.33 -15.11 16 15 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 18 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 22 N -0.36 -5.82 8.28 30.89 0.26 -5.56 16 23 O 0.09 1.33 11.31 18.11 0.20 1.53 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 1.28 7.30 -51.93 -0.38 0.90 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.14 5.75 -51.93 -0.30 0.85 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.42 4.81 8.67 -34.47 -0.30 4.51 16 34 H 0.11 2.24 5.51 -51.92 -0.29 1.96 16 35 H 0.14 2.80 7.14 -51.92 -0.37 2.43 16 36 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 37 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -36.16 322.49 -6.55 -42.72 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.95 Total: 3.02 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.51 Total: -21.48 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.91 Total: -54.10 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.67 Total: -39.62 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.54 Total: 47.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.16 -6.55 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330692038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.181 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds