Wall clock time and date at job start Tue Mar 31 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 114.00260 * 2 1 4 4 N 1.46492 * 109.46863 * 180.02562 * 3 2 1 5 5 N 1.40083 * 126.03650 * 90.03469 * 4 3 2 6 6 C 1.30840 * 108.20627 * 179.97438 * 5 4 3 7 7 C 1.50705 * 125.89833 * 180.02562 * 6 5 4 8 8 C 1.39863 * 108.20294 * 359.97438 * 6 5 4 9 9 S 1.76199 * 126.03975 * 179.97438 * 8 6 5 10 10 O 1.42103 * 106.40295 * 203.56351 * 9 8 6 11 11 O 1.42094 * 106.40326 * 336.48555 * 9 8 6 12 12 N 1.65598 * 107.22182 * 90.02730 * 9 8 6 13 13 C 1.46501 * 119.99790 * 270.00455 * 12 9 8 14 14 C 1.36941 * 120.00420 * 89.99516 * 12 9 8 15 15 H 1.07998 * 119.99380 * 22.36802 * 14 12 9 16 16 C 1.38808 * 120.00082 * 202.36558 * 14 12 9 17 17 N 1.31621 * 120.00050 * 11.14268 * 16 14 12 18 18 Si 1.86800 * 119.99893 * 191.13461 * 16 14 12 19 19 H 1.48505 * 109.46823 * 60.00182 * 18 16 14 20 20 H 1.48500 * 109.47311 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47358 * 300.00366 * 18 16 14 22 22 C 1.34945 * 126.04051 * 270.31093 * 4 3 2 23 23 C 1.50706 * 126.12859 * 0.02562 * 22 4 3 24 24 H 1.08989 * 109.46885 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46623 * 299.99523 * 1 2 3 26 26 H 1.08998 * 109.47032 * 59.99335 * 1 2 3 27 27 H 1.09005 * 109.46592 * 60.00369 * 3 2 1 28 28 H 1.08998 * 109.47350 * 300.00773 * 3 2 1 29 29 H 1.08996 * 109.46876 * 269.97296 * 7 6 5 30 30 H 1.09003 * 109.47151 * 29.97067 * 7 6 5 31 31 H 1.09000 * 109.46923 * 149.97068 * 7 6 5 32 32 H 1.08999 * 109.47460 * 94.10855 * 13 12 9 33 33 H 1.09001 * 109.47139 * 214.10693 * 13 12 9 34 34 H 1.09002 * 109.47274 * 334.10312 * 13 12 9 35 35 H 0.97000 * 119.99738 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46781 * 270.17761 * 23 22 4 37 37 H 1.08999 * 109.46611 * 30.17273 * 23 22 4 38 38 H 1.08993 * 109.47350 * 150.17487 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 7 3.4707 1.1897 -0.0006 5 7 4.2918 1.1254 -1.1337 6 6 5.5337 1.0272 -0.7336 7 6 6.7446 0.9326 -1.6257 8 6 5.5433 1.0263 0.6650 9 16 6.9707 0.9128 1.6917 10 8 6.5268 0.4013 2.9410 11 8 7.9787 0.2871 0.9098 12 7 7.4929 2.4579 1.9782 13 6 8.4608 3.0835 1.0737 14 6 7.0198 3.1511 3.0603 15 1 6.6128 2.6183 3.9069 16 6 7.0633 4.5385 3.0689 17 7 7.3502 5.1948 1.9647 18 14 6.7144 5.4740 4.6477 19 1 7.6995 5.0777 5.6859 20 1 6.8230 6.9330 4.3929 21 1 5.3429 5.1552 5.1193 22 6 4.2622 1.1208 1.0902 23 6 3.8021 1.1487 2.5250 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8465 -0.8899 29 1 6.9561 -0.1147 -1.8413 30 1 6.5516 1.4636 -2.5579 31 1 7.6019 1.3805 -1.1232 32 1 7.9304 3.6655 0.3200 33 1 9.1185 3.7401 1.6432 34 1 9.0537 2.3104 0.5850 35 1 7.3810 6.1643 1.9709 36 1 3.7690 2.1801 2.8759 37 1 2.8074 0.7087 2.5962 38 1 4.4969 0.5776 3.1406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331052287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:28 Heat of formation + Delta-G solvation = -28.823965 kcal Electronic energy + Delta-G solvation = -24218.885187 eV Core-core repulsion = 20612.323698 eV Total energy + Delta-G solvation = -3606.561489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.85533 -37.99793 -35.91741 -35.53400 -34.41970 -33.30066 -31.50584 -31.34341 -28.95672 -26.88099 -26.56486 -26.31562 -24.52907 -23.39326 -20.63931 -19.29127 -18.31072 -17.34605 -17.00851 -16.69902 -16.32036 -16.02170 -15.16151 -14.72464 -14.41026 -14.26236 -13.98976 -13.41255 -13.11416 -12.95298 -12.82966 -12.63841 -12.41934 -12.13808 -12.09611 -11.78195 -11.60541 -11.50365 -11.30297 -11.00808 -10.95047 -10.74515 -10.64287 -10.36183 -10.18215 -10.07036 -10.05596 -9.68859 -9.19219 -8.79792 -8.43327 -7.99040 -6.41878 -3.95701 1.85921 1.98812 2.58732 2.94647 3.13826 3.17750 3.22882 3.82883 4.05959 4.50708 4.65657 4.79236 4.88257 4.92425 5.03004 5.03365 5.19042 5.23149 5.35978 5.47346 5.54473 5.86222 6.00025 6.13412 6.28850 6.33992 6.45409 6.50821 6.65911 6.72151 6.95672 7.07114 7.19809 7.35379 7.37034 7.55458 8.03882 8.37983 8.79980 9.24325 10.55696 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.006293 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.976096 B = 4448.384866 C = 5314.526929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.406 6.406 3 C 0.308 3.692 4 N -0.376 5.376 5 N -0.307 5.307 6 C 0.159 3.841 7 C -0.080 4.080 8 C -0.792 4.792 9 S 2.598 3.402 10 O -0.989 6.989 11 O -0.998 6.998 12 N -0.818 5.818 13 C 0.125 3.875 14 C -0.261 4.261 15 H 0.111 0.889 16 C 0.033 3.967 17 N -0.850 5.850 18 Si 0.922 3.078 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.210 3.790 23 C -0.128 4.128 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.271 0.729 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -2.245 -2.275 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.324 6.324 3 C 0.147 3.853 4 N -0.160 5.160 5 N -0.127 5.127 6 C -0.011 4.011 7 C -0.139 4.139 8 C -0.882 4.882 9 S 2.693 3.307 10 O -0.978 6.978 11 O -0.988 6.988 12 N -0.645 5.645 13 C -0.021 4.021 14 C -0.405 4.405 15 H 0.129 0.871 16 C -0.178 4.178 17 N -0.490 5.490 18 Si 0.748 3.252 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.081 3.919 23 C -0.186 4.186 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.763 -3.120 -3.228 10.745 hybrid contribution -0.833 1.165 0.745 1.615 sum -10.596 -1.954 -2.483 11.057 Atomic orbital electron populations 1.22708 0.79144 1.03462 1.00365 1.87911 1.20694 1.28331 1.95455 1.22174 0.75625 0.85074 1.02441 1.48730 1.05013 1.58045 1.04209 1.77200 1.01583 1.27084 1.06842 1.21838 0.93480 0.93706 0.92052 1.20401 0.92507 1.03472 0.97520 1.32590 1.17999 1.29101 1.08516 1.08141 0.72884 0.76902 0.72784 1.93274 1.82321 1.80215 1.42029 1.93339 1.57181 1.76735 1.71495 1.53668 1.44931 1.35381 1.30496 1.21269 0.91292 0.96001 0.93579 1.19740 1.38921 0.89515 0.92340 0.87111 1.25613 0.96704 0.97233 0.98202 1.70103 1.44012 1.08637 1.26250 0.86059 0.79470 0.78172 0.81473 1.19404 1.20837 1.19582 1.20927 0.89344 0.90879 0.90743 1.21112 1.03119 1.05367 0.89013 0.89002 0.93486 0.93572 0.89648 0.89724 0.89930 0.91117 0.88945 0.93084 0.90910 0.93971 0.91887 0.88788 0.91397 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.01 101.05 1.11 1.47 16 2 O -0.41 -5.83 10.93 -35.23 -0.39 -6.21 16 3 C 0.31 4.42 6.87 59.84 0.41 4.83 16 4 N -0.38 -7.32 3.88 -61.90 -0.24 -7.56 16 5 N -0.31 -6.51 12.58 33.67 0.42 -6.08 16 6 C 0.16 3.42 7.21 -82.40 -0.59 2.83 16 7 C -0.08 -1.47 9.53 36.01 0.34 -1.13 16 8 C -0.79 -17.84 6.17 -40.01 -0.25 -18.09 16 9 S 2.60 61.50 5.63 -107.50 -0.60 60.90 16 10 O -0.99 -24.41 14.03 -57.17 -0.80 -25.21 16 11 O -1.00 -24.30 14.46 -57.17 -0.83 -25.13 16 12 N -0.82 -19.82 3.31 -66.69 -0.22 -20.04 16 13 C 0.12 2.84 8.92 59.85 0.53 3.37 16 14 C -0.26 -6.46 9.44 -15.06 -0.14 -6.60 16 15 H 0.11 2.68 7.16 -52.49 -0.38 2.31 16 16 C 0.03 0.78 5.13 -17.43 -0.09 0.69 16 17 N -0.85 -20.98 10.58 55.49 0.59 -20.39 16 18 Si 0.92 18.64 29.57 -169.99 -5.03 13.61 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C 0.21 4.34 6.92 -82.26 -0.57 3.77 16 23 C -0.13 -2.25 9.57 36.01 0.34 -1.90 16 24 H 0.09 0.69 8.14 -51.94 -0.42 0.27 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.73 6.88 -51.93 -0.36 1.38 16 32 H 0.05 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.07 1.67 7.18 -51.93 -0.37 1.30 16 34 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 35 H 0.27 6.33 8.31 -40.82 -0.34 6.00 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.07 0.97 7.74 -51.93 -0.40 0.56 16 38 H 0.13 2.44 5.54 -51.93 -0.29 2.15 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -31.96 328.90 -6.07 -38.03 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.03 Total: 3.89 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 1.10 Total: -10.75 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.55 Total: -54.08 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.01 Total: -56.55 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 16 Polarization: 61.50 SS G_CDS: -0.60 Total: 60.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.96 -6.07 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331052287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.206 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds