Wall clock time and date at job start Tue Mar 31 2020 04:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46902 * 2 1 4 4 H 1.09001 * 109.46927 * 303.49702 * 3 2 1 5 5 C 1.50694 * 109.46989 * 183.49758 * 3 2 1 6 6 H 1.07994 * 119.99975 * 239.99567 * 5 3 2 7 7 C 1.37879 * 120.00143 * 59.72189 * 5 3 2 8 8 N 1.31520 * 119.99878 * 0.27823 * 7 5 3 9 9 Si 1.86795 * 120.00161 * 180.27221 * 7 5 3 10 10 H 1.48498 * 109.47414 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47114 * 119.99998 * 9 7 5 12 12 H 1.48497 * 109.47503 * 240.00065 * 9 7 5 13 13 N 1.46499 * 109.47120 * 63.49349 * 3 2 1 14 14 S 1.65600 * 120.00108 * 215.77392 * 13 3 2 15 15 O 1.42095 * 106.40289 * 178.23000 * 14 13 3 16 16 O 1.42106 * 106.40098 * 311.15396 * 14 13 3 17 17 C 1.76200 * 107.21714 * 64.68932 * 14 13 3 18 18 C 1.35314 * 126.12817 * 264.09103 * 17 14 13 19 19 C 1.39870 * 107.91636 * 179.90275 * 18 17 14 20 20 N 1.30835 * 108.20440 * 0.36172 * 19 18 17 21 21 N 1.34949 * 126.12405 * 84.39977 * 17 14 13 22 22 C 1.46504 * 126.03666 * 359.93695 * 21 17 14 23 23 O 1.42898 * 109.46522 * 90.00437 * 22 21 17 24 24 C 1.42908 * 113.99988 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47025 * 64.82238 * 1 2 3 26 26 H 1.09000 * 109.47129 * 184.81774 * 1 2 3 27 27 H 1.08999 * 109.47582 * 304.82138 * 1 2 3 28 28 H 1.09000 * 109.47220 * 239.99749 * 2 1 3 29 29 H 1.09001 * 109.47053 * 119.99361 * 2 1 3 30 30 H 0.97004 * 119.99971 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99872 * 35.78190 * 13 3 2 32 32 H 1.07997 * 126.04039 * 0.03070 * 18 17 14 33 33 H 1.08009 * 125.89907 * 180.13991 * 19 18 17 34 34 H 1.08997 * 109.47175 * 210.00233 * 22 21 17 35 35 H 1.09000 * 109.47238 * 330.00726 * 22 21 17 36 36 H 1.09002 * 109.46694 * 300.00445 * 24 23 22 37 37 H 1.09001 * 109.46478 * 59.99736 * 24 23 22 38 38 H 1.08993 * 109.47304 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6263 1.9741 -0.8570 5 6 3.5444 1.4435 -0.0867 6 1 4.1303 1.8949 0.7002 7 6 4.1730 0.8630 -1.1678 8 7 3.4595 0.3132 -2.1261 9 14 6.0381 0.8574 -1.2715 10 1 6.6024 1.5336 -0.0760 11 1 6.5267 -0.5440 -1.3238 12 1 6.4679 1.5774 -2.4970 13 7 1.6215 2.1084 1.2360 14 16 1.2065 3.7114 1.2134 15 8 0.8137 4.0430 2.5381 16 8 2.2474 4.3856 0.5195 17 6 -0.2368 3.8625 0.2140 18 6 -0.2677 4.1909 -1.0983 19 6 -1.6048 4.1986 -1.5086 20 7 -2.3504 3.8935 -0.4777 21 7 -1.5098 3.6769 0.6216 22 6 -1.9370 3.3126 1.9748 23 8 -2.1623 4.4991 2.7387 24 6 -2.5856 4.2543 4.0815 25 1 -0.3633 0.4372 -0.9301 26 1 -0.3633 -1.0240 0.0863 27 1 -0.3634 0.5868 0.8436 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 3.9017 -0.0949 -2.8870 31 1 1.5877 1.6104 2.0677 32 1 0.5889 4.4068 -1.7197 33 1 -1.9607 4.4216 -2.5037 34 1 -2.8593 2.7343 1.9213 35 1 -1.1606 2.7150 2.4525 36 1 -3.5215 3.6956 4.0712 37 1 -1.8229 3.6759 4.6030 38 1 -2.7347 5.2044 4.5944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331087309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:33 Heat of formation + Delta-G solvation = -31.860571 kcal Electronic energy + Delta-G solvation = -24262.610890 eV Core-core repulsion = 20655.917724 eV Total energy + Delta-G solvation = -3606.693166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08461 -37.94079 -36.77434 -36.05612 -35.36906 -32.52617 -32.23682 -30.73520 -30.29684 -27.26937 -26.71199 -25.35550 -23.12414 -22.03501 -21.23685 -20.26807 -19.04661 -17.94450 -17.22585 -16.83297 -16.41212 -15.92596 -15.52158 -15.37784 -14.67211 -14.43052 -14.26156 -13.85053 -13.56136 -13.21426 -13.18553 -13.04971 -12.48751 -11.99379 -11.76154 -11.67892 -11.61138 -11.48485 -11.33831 -11.27030 -10.99112 -10.82987 -10.66163 -10.24562 -9.95773 -9.93425 -9.87863 -9.82605 -9.67335 -8.79303 -8.47203 -8.36548 -6.10998 -4.17602 0.78317 1.35615 2.22093 2.75316 3.28239 3.36804 3.42208 3.57923 3.89295 4.14866 4.38510 4.40409 4.74089 4.89423 5.09206 5.15754 5.19407 5.27717 5.50835 5.54230 5.56872 5.96757 5.99774 6.04885 6.19834 6.38012 6.54197 6.65784 6.67724 6.85131 6.98598 7.01090 7.47133 7.53166 7.56798 7.80686 8.00060 8.17694 8.85738 9.48911 10.93690 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.005396 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.575127 B = 5187.868099 C = 5407.900971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.279 3.721 4 H 0.045 0.955 5 C -0.521 4.521 6 H 0.066 0.934 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.282 1.282 13 N -1.096 6.096 14 S 2.700 3.300 15 O -0.970 6.970 16 O -0.927 6.927 17 C -0.471 4.471 18 C -0.144 4.144 19 C 0.035 3.965 20 N -0.257 5.257 21 N -0.315 5.315 22 C 0.304 3.696 23 O -0.394 6.394 24 C 0.042 3.958 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.108 0.892 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.407 0.593 32 H 0.169 0.831 33 H 0.194 0.806 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.809 2.625 6.308 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.063 0.937 5 C -0.560 4.560 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.858 5.858 14 S 2.781 3.219 15 O -0.960 6.960 16 O -0.916 6.916 17 C -0.676 4.676 18 C -0.175 4.175 19 C -0.151 4.151 20 N -0.080 5.080 21 N -0.103 5.103 22 C 0.144 3.856 23 O -0.311 6.311 24 C -0.055 4.055 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.241 0.759 32 H 0.186 0.814 33 H 0.211 0.789 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.594 3.299 6.852 13.865 hybrid contribution 1.093 -0.604 -0.543 1.362 sum -10.501 2.695 6.309 12.543 Atomic orbital electron populations 1.21828 0.99151 0.99399 1.00034 1.21891 0.91712 0.99393 1.03582 1.18638 0.94776 0.90050 0.79043 0.93740 1.21524 0.90870 1.36944 1.06684 0.91606 1.24892 0.98677 0.94886 0.95322 1.69844 1.35174 1.38139 1.09919 0.86437 0.85159 0.77521 0.78328 1.19600 1.21082 1.20823 1.55595 1.81485 1.29786 1.18948 1.02097 0.73103 0.73911 0.72829 1.93558 1.83836 1.83309 1.35290 1.93651 1.50228 1.72561 1.75119 1.34113 1.07134 1.14889 1.11471 1.21746 0.98993 1.03838 0.92905 1.24135 0.91958 1.00339 0.98645 1.77170 1.18654 1.18493 0.93709 1.48002 1.02031 1.52672 1.07604 1.22384 1.00923 0.86667 0.75664 1.87869 1.88600 1.30119 1.24557 1.22721 0.98297 1.03003 0.81502 0.93716 0.94385 0.94911 0.87393 0.93888 0.92692 0.75930 0.81373 0.78914 0.89200 0.89193 0.93834 0.92853 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.85 37.16 0.37 -2.21 16 2 C -0.13 -2.62 5.37 -26.73 -0.14 -2.77 16 3 C 0.28 6.25 2.17 -69.08 -0.15 6.10 16 4 H 0.04 1.07 7.83 -51.93 -0.41 0.67 16 5 C -0.52 -13.42 8.84 -34.44 -0.30 -13.73 16 6 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -23.60 11.29 55.43 0.63 -22.97 16 9 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -1.10 -20.64 4.76 -5.88 -0.03 -20.67 16 14 S 2.70 51.66 5.50 -107.50 -0.59 51.07 16 15 O -0.97 -18.47 16.08 -57.18 -0.92 -19.39 16 16 O -0.93 -20.93 17.57 -57.17 -1.00 -21.94 16 17 C -0.47 -8.51 6.81 -17.22 -0.12 -8.62 16 18 C -0.14 -2.44 10.50 -40.01 -0.42 -2.86 16 19 C 0.04 0.53 12.02 -17.37 -0.21 0.32 16 20 N -0.26 -4.29 12.58 30.63 0.39 -3.90 16 21 N -0.31 -5.35 3.88 -65.26 -0.25 -5.60 16 22 C 0.30 4.35 6.34 59.85 0.38 4.73 16 23 O -0.39 -5.92 10.86 -35.23 -0.38 -6.30 16 24 C 0.04 0.42 11.01 101.05 1.11 1.53 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.51 7.57 -51.93 -0.39 0.12 16 28 H 0.11 2.56 5.97 -51.93 -0.31 2.25 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.41 6.53 8.85 -34.47 -0.30 6.23 16 32 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 33 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.18 6.92 -51.93 -0.36 0.82 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -32.47 337.97 -6.80 -39.27 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.12 Total: 5.58 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 0.42 Total: -15.92 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.73 Total: -53.15 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -2.31 Total: -47.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.59 Total: 51.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.47 -6.80 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331087309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.413 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds