Wall clock time and date at job start Tue Mar 31 2020 04:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 109.47245 * 2 1 4 4 H 1.09001 * 109.47239 * 178.13556 * 3 2 1 5 5 C 1.50703 * 109.47013 * 298.13343 * 3 2 1 6 6 H 1.07995 * 119.99880 * 120.00063 * 5 3 2 7 7 C 1.37878 * 119.99806 * 299.99762 * 5 3 2 8 8 N 1.31513 * 120.00423 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99870 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46930 * 59.99825 * 9 7 5 11 11 H 1.48494 * 109.47195 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47221 * 299.99985 * 9 7 5 13 13 N 1.46501 * 109.47020 * 58.13081 * 3 2 1 14 14 S 1.65602 * 119.99791 * 94.88187 * 13 3 2 15 15 O 1.42098 * 106.40416 * 312.22076 * 14 13 3 16 16 O 1.42101 * 106.40139 * 179.29914 * 14 13 3 17 17 C 1.76203 * 107.21732 * 65.76123 * 14 13 3 18 18 C 1.35313 * 126.12579 * 90.02188 * 17 14 13 19 19 C 1.39877 * 107.92058 * 179.97438 * 18 17 14 20 20 N 1.30846 * 108.19685 * 0.26655 * 19 18 17 21 21 N 1.34948 * 126.12465 * 269.98228 * 17 14 13 22 22 C 1.46503 * 126.03896 * 0.03511 * 21 17 14 23 23 O 1.42897 * 109.46946 * 90.00210 * 22 21 17 24 24 C 1.42903 * 113.99855 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.47648 * 296.73131 * 1 2 3 26 26 H 1.08995 * 109.47857 * 56.73057 * 1 2 3 27 27 H 1.09004 * 109.47575 * 176.73164 * 1 2 3 28 28 H 1.08999 * 109.47222 * 240.00344 * 2 1 3 29 29 H 1.08995 * 109.47254 * 119.99956 * 2 1 3 30 30 H 0.96998 * 120.00515 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00102 * 274.88013 * 13 3 2 32 32 H 1.07995 * 126.04450 * 359.94283 * 18 17 14 33 33 H 1.07994 * 125.90324 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.47050 * 210.00304 * 22 21 17 35 35 H 1.08996 * 109.46800 * 330.00212 * 22 21 17 36 36 H 1.08991 * 109.46952 * 180.02562 * 24 23 22 37 37 H 1.08998 * 109.46864 * 299.99793 * 24 23 22 38 38 H 1.08999 * 109.46931 * 59.99645 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4427 0.0334 5 6 1.5757 2.1394 -1.2530 6 1 0.9523 3.0184 -1.1825 7 6 1.9471 1.6548 -2.4892 8 7 2.7068 0.5847 -2.5750 9 14 1.3711 2.5183 -4.0424 10 1 1.8655 3.9186 -4.0426 11 1 1.9036 1.8056 -5.2314 12 1 -0.1132 2.5174 -4.0878 13 7 1.5151 2.1460 1.1730 14 16 2.4213 2.2403 2.5559 15 8 2.8950 0.9261 2.8158 16 8 1.6533 2.9883 3.4886 17 6 3.8405 3.2162 2.1839 18 6 3.9403 4.5597 2.3101 19 6 5.2277 4.9349 1.9123 20 7 5.8756 3.8559 1.5545 21 7 5.0229 2.7574 1.7228 22 6 5.3541 1.3582 1.4418 23 8 5.0268 1.0546 0.0843 24 6 5.3119 -0.2934 -0.2948 25 1 -0.3634 0.4623 0.9178 26 1 -0.3634 0.5637 -0.8591 27 1 -0.3634 -1.0260 -0.0586 28 1 1.8932 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8899 30 1 2.9677 0.2436 -3.4447 31 1 0.6370 2.5565 1.1397 32 1 3.1631 5.2249 2.6562 33 1 5.6179 5.9418 1.8980 34 1 6.4201 1.1977 1.6032 35 1 4.7843 0.7094 2.1068 36 1 5.0359 -0.4434 -1.3384 37 1 6.3770 -0.4885 -0.1694 38 1 4.7409 -0.9762 0.3343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331087310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:37 Heat of formation + Delta-G solvation = -29.087700 kcal Electronic energy + Delta-G solvation = -24972.504087 eV Core-core repulsion = 21365.931162 eV Total energy + Delta-G solvation = -3606.572925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99752 -37.61227 -36.81565 -35.95546 -35.54984 -32.30525 -32.17642 -30.37225 -30.21396 -26.79436 -26.34158 -24.94630 -23.53837 -21.99362 -21.14194 -20.08549 -18.86204 -17.77324 -17.35224 -16.52074 -16.19027 -15.64037 -15.31139 -15.20272 -14.69100 -14.27241 -14.11027 -13.65113 -13.57437 -13.14685 -12.89539 -12.65499 -12.24162 -12.15731 -11.84445 -11.67736 -11.61246 -11.30978 -11.03758 -10.99966 -10.87380 -10.64641 -10.55241 -10.42339 -10.00651 -9.71911 -9.61130 -9.44382 -8.98351 -8.71652 -8.55145 -8.20050 -6.07908 -4.11847 0.74005 1.45137 2.42040 2.79797 3.27584 3.32069 3.34773 3.54473 4.04345 4.33584 4.38178 4.56787 4.80896 5.16084 5.25637 5.41847 5.52809 5.60093 5.67063 5.88904 5.90813 6.32215 6.39601 6.43389 6.55044 6.62868 6.66470 6.81827 7.04322 7.29876 7.44520 7.46598 7.58338 7.63265 7.69070 7.87126 8.05782 8.31093 8.86567 9.51021 10.97159 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.007442 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.610775 B = 3761.506825 C = 4107.051170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C 0.255 3.745 4 H 0.082 0.918 5 C -0.517 4.517 6 H 0.059 0.941 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -1.087 6.087 14 S 2.702 3.298 15 O -0.959 6.959 16 O -0.966 6.966 17 C -0.469 4.469 18 C -0.156 4.156 19 C 0.029 3.971 20 N -0.254 5.254 21 N -0.302 5.302 22 C 0.269 3.731 23 O -0.370 6.370 24 C 0.048 3.952 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.411 0.589 32 H 0.162 0.838 33 H 0.192 0.808 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 1.204 6.965 7.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.172 4.172 3 C 0.152 3.848 4 H 0.099 0.901 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.131 4.131 8 N -0.517 5.517 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.850 5.850 14 S 2.785 3.215 15 O -0.948 6.948 16 O -0.955 6.955 17 C -0.676 4.676 18 C -0.188 4.188 19 C -0.157 4.157 20 N -0.078 5.078 21 N -0.089 5.089 22 C 0.109 3.891 23 O -0.288 6.288 24 C -0.048 4.048 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.246 0.754 32 H 0.180 0.820 33 H 0.208 0.792 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.684 0.123 7.024 8.444 hybrid contribution -0.849 1.401 -1.092 1.969 sum 3.836 1.524 5.932 7.227 Atomic orbital electron populations 1.21583 0.98056 0.98616 1.00688 1.21952 0.94687 0.99157 1.01397 1.19200 0.96499 0.88141 0.80963 0.90084 1.21110 1.32415 1.12161 0.90007 0.92315 1.24754 0.94890 0.94945 0.98533 1.69807 1.35422 1.22098 1.24333 0.86651 0.78905 0.79723 0.82589 1.20507 1.21362 1.20388 1.55548 1.28552 1.69297 1.31610 1.01816 0.72771 0.73567 0.73367 1.93497 1.81511 1.35551 1.84270 1.93561 1.67956 1.73355 1.60661 1.33929 1.09489 1.09772 1.14378 1.21551 0.98911 0.92417 1.05951 1.24059 0.93501 0.98257 0.99833 1.77197 1.18563 0.93267 1.18757 1.48188 1.07405 1.06562 1.46707 1.23036 1.01266 0.76559 0.88229 1.88051 1.84774 1.30774 1.25181 1.22747 0.97782 0.81045 1.03272 0.95157 0.91951 0.95670 0.88118 0.95400 0.92939 0.75441 0.82027 0.79161 0.89830 0.86309 0.87183 0.95098 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.52 37.15 0.35 -2.31 16 2 C -0.13 -2.91 5.70 -26.74 -0.15 -3.07 16 3 C 0.26 5.76 2.45 -69.08 -0.17 5.59 16 4 H 0.08 1.91 4.29 -51.93 -0.22 1.69 16 5 C -0.52 -12.83 7.53 -34.44 -0.26 -13.09 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -22.08 11.31 55.43 0.63 -21.45 16 9 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -1.09 -21.31 4.72 -5.88 -0.03 -21.34 16 14 S 2.70 50.27 5.72 -107.50 -0.61 49.66 16 15 O -0.96 -18.78 14.50 -57.17 -0.83 -19.61 16 16 O -0.97 -18.58 17.85 -57.17 -1.02 -19.60 16 17 C -0.47 -8.65 6.89 -17.22 -0.12 -8.77 16 18 C -0.16 -2.54 10.55 -40.01 -0.42 -2.97 16 19 C 0.03 0.45 12.03 -17.36 -0.21 0.24 16 20 N -0.25 -4.61 12.58 30.63 0.39 -4.22 16 21 N -0.30 -5.68 3.88 -65.26 -0.25 -5.93 16 22 C 0.27 4.69 6.75 59.85 0.40 5.10 16 23 O -0.37 -7.31 7.94 -35.23 -0.28 -7.59 16 24 C 0.05 0.79 11.01 101.05 1.11 1.90 16 25 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 26 H 0.06 1.33 7.17 -51.93 -0.37 0.96 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 2.41 6.02 -51.93 -0.31 2.10 16 29 H 0.03 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 31 H 0.41 7.33 8.70 -34.47 -0.30 7.03 16 32 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 33 H 0.19 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.12 2.02 5.46 -51.93 -0.28 1.74 16 36 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -30.24 326.85 -6.45 -36.69 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.79 Total: 8.91 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 0.44 Total: -15.66 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.73 Total: -52.95 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -2.13 Total: -46.79 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.61 Total: 49.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.24 -6.45 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331087310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.600 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds