Wall clock time and date at job start Tue Mar 31 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47118 * 2 1 4 4 C 1.46498 * 119.99839 * 274.99820 * 3 2 1 5 5 C 1.50699 * 109.47016 * 274.99854 * 4 3 2 6 6 H 1.07998 * 120.00456 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99740 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99878 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46813 * 89.99949 * 9 7 5 11 11 H 1.48495 * 109.46895 * 210.00457 * 9 7 5 12 12 H 1.48499 * 109.46894 * 330.00215 * 9 7 5 13 13 S 1.65601 * 119.99869 * 94.99706 * 3 2 1 14 14 O 1.42093 * 106.40560 * 336.45882 * 13 3 2 15 15 O 1.42103 * 106.39927 * 203.54033 * 13 3 2 16 16 C 1.76199 * 107.21539 * 90.00116 * 13 3 2 17 17 C 1.35316 * 126.12892 * 270.02249 * 16 13 3 18 18 C 1.39868 * 107.92272 * 179.97438 * 17 16 13 19 19 N 1.30837 * 108.20148 * 359.97438 * 18 17 16 20 20 N 1.34954 * 126.12739 * 89.99787 * 16 13 3 21 21 C 1.46494 * 126.03475 * 359.75606 * 20 16 13 22 22 O 1.42906 * 109.47207 * 90.00122 * 21 20 16 23 23 C 1.42898 * 114.00330 * 179.97438 * 22 21 20 24 24 H 1.08994 * 109.47515 * 300.00297 * 1 2 3 25 25 H 1.09001 * 109.46908 * 60.00028 * 1 2 3 26 26 H 1.09003 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46657 * 239.99765 * 2 1 3 28 28 H 1.09001 * 109.46908 * 119.99972 * 2 1 3 29 29 H 1.09004 * 109.47401 * 35.00169 * 4 3 2 30 30 H 1.08996 * 109.47152 * 154.99875 * 4 3 2 31 31 H 0.96999 * 119.99831 * 179.97438 * 8 7 5 32 32 H 1.07999 * 126.03437 * 359.97438 * 17 16 13 33 33 H 1.08001 * 125.89990 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.47324 * 209.99797 * 21 20 16 35 35 H 1.08997 * 109.47734 * 329.99813 * 21 20 16 36 36 H 1.08997 * 109.47385 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.46888 * 300.00367 * 23 22 21 38 38 H 1.09008 * 109.47054 * 59.99668 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8822 6 1 4.1721 1.1110 -1.3839 7 6 3.8526 2.3605 -3.0849 8 7 3.0276 3.1854 -3.6920 9 14 5.5090 1.9634 -3.8517 10 1 5.3730 0.7801 -4.7385 11 1 5.9779 3.1267 -4.6468 12 1 6.4928 1.6679 -2.7793 13 16 2.4121 2.1202 1.4287 14 8 1.6868 1.4416 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1169 1.7940 1.7320 17 6 4.6182 0.7379 2.4133 18 6 6.0120 0.8549 2.4240 19 7 6.3358 1.9420 1.7720 20 7 5.1566 2.5526 1.3260 21 6 5.0680 3.7919 0.5499 22 8 4.9671 4.9053 1.4400 23 6 4.8754 6.1699 0.7810 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3618 1.8097 -1.9454 30 1 2.0922 3.1802 -1.0757 31 1 3.2795 3.5879 -4.5379 32 1 4.0436 -0.0553 2.8685 33 1 6.7017 0.1667 2.8900 34 1 5.9606 3.8993 -0.0665 35 1 4.1865 3.7575 -0.0903 36 1 4.8016 6.9629 1.5252 37 1 5.7642 6.3263 0.1698 38 1 3.9900 6.1850 0.1453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331281802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:47 Heat of formation + Delta-G solvation = -29.368891 kcal Electronic energy + Delta-G solvation = -24705.334143 eV Core-core repulsion = 21098.749024 eV Total energy + Delta-G solvation = -3606.585118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91678 -37.57952 -36.81630 -36.22132 -35.42217 -32.89273 -32.24061 -30.20921 -30.06400 -26.95043 -26.78750 -24.96090 -23.28717 -22.08610 -21.59081 -21.06176 -18.56399 -17.58995 -17.16230 -16.49944 -16.37174 -15.75227 -15.54454 -15.21188 -14.65017 -14.32506 -14.12368 -14.00098 -13.55913 -13.38787 -13.01872 -12.87847 -12.24647 -12.13360 -12.12285 -11.80643 -11.63652 -11.48893 -11.31931 -11.21225 -11.16284 -11.06756 -10.64486 -10.55788 -10.49908 -10.17387 -9.93950 -9.57484 -9.46228 -8.68671 -8.64519 -8.24971 -6.28155 -4.36125 0.77782 1.54087 2.47162 2.83748 3.13736 3.22307 3.25888 3.48583 4.10958 4.22502 4.26812 4.66534 4.86408 5.05415 5.28050 5.31994 5.49698 5.56664 5.59373 5.64991 5.68516 5.73165 5.77613 5.91699 5.93961 6.01220 6.23845 6.54152 6.61154 6.72841 6.87573 7.16682 7.23190 7.32074 7.43531 7.68955 7.71828 7.96037 8.70789 9.31551 10.78818 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.009075 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.784608 B = 3084.692444 C = 4068.935610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.975 5.975 4 C 0.241 3.759 5 C -0.549 4.549 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 S 2.700 3.300 14 O -0.958 6.958 15 O -0.944 6.944 16 C -0.461 4.461 17 C -0.169 4.169 18 C 0.028 3.972 19 N -0.258 5.258 20 N -0.292 5.292 21 C 0.297 3.703 22 O -0.402 6.402 23 C 0.043 3.957 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.267 0.733 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -2.470 7.225 7.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.816 5.816 4 C 0.119 3.881 5 C -0.588 4.588 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 S 2.782 3.218 14 O -0.948 6.948 15 O -0.934 6.934 16 C -0.668 4.668 17 C -0.201 4.201 18 C -0.157 4.157 19 N -0.082 5.082 20 N -0.078 5.078 21 C 0.137 3.863 22 O -0.321 6.321 23 C -0.054 4.054 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.207 0.793 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.084 -0.984 7.289 7.434 hybrid contribution 1.172 -1.089 -0.727 1.757 sum 2.255 -2.073 6.562 7.242 Atomic orbital electron populations 1.22208 0.96413 1.01721 1.02579 1.21109 0.93963 0.82217 1.02737 1.57474 1.77074 1.23679 1.23333 1.19332 0.97741 0.92249 0.78774 1.21572 1.02259 1.28520 1.06436 0.91989 1.24907 0.97148 0.94715 0.96672 1.69922 1.35813 1.29413 1.17024 0.86696 0.84090 0.78350 0.79699 1.20258 1.20856 1.19673 1.02082 0.72545 0.73998 0.73150 1.93553 1.68028 1.75954 1.57245 1.93584 1.85363 1.29282 1.85128 1.34055 1.19503 1.02778 1.10456 1.21504 0.94776 0.99640 1.04202 1.24018 0.95556 0.96435 0.99718 1.77200 1.07372 1.09457 1.14207 1.48047 1.01880 1.17610 1.40288 1.22790 1.04750 0.73964 0.84766 1.87731 1.95128 1.14774 1.34417 1.22687 1.00868 0.83432 0.98376 0.92441 0.91924 0.92010 0.89756 0.91405 0.93387 0.92984 0.92362 0.82221 0.79295 0.89511 0.86144 0.89285 0.93958 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.13 2.04 6.06 -4.04 -0.02 2.02 16 3 N -0.97 -18.98 2.77 -115.66 -0.32 -19.30 16 4 C 0.24 5.47 5.29 -5.20 -0.03 5.45 16 5 C -0.55 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.88 -23.36 13.29 55.43 0.74 -22.62 16 9 Si 0.88 19.92 29.54 -169.99 -5.02 14.90 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 S 2.70 53.40 5.60 -107.50 -0.60 52.80 16 14 O -0.96 -18.92 16.82 -57.17 -0.96 -19.88 16 15 O -0.94 -20.61 14.28 -57.19 -0.82 -21.43 16 16 C -0.46 -8.99 7.00 -17.22 -0.12 -9.11 16 17 C -0.17 -2.83 10.55 -40.01 -0.42 -3.25 16 18 C 0.03 0.45 12.03 -17.37 -0.21 0.24 16 19 N -0.26 -4.99 12.58 30.62 0.39 -4.60 16 20 N -0.29 -6.00 3.88 -65.26 -0.25 -6.25 16 21 C 0.30 5.96 6.32 59.84 0.38 6.34 16 22 O -0.40 -7.74 10.86 -35.23 -0.38 -8.12 16 23 C 0.04 0.64 11.01 101.05 1.11 1.75 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 28 H 0.07 0.97 7.61 -51.93 -0.40 0.58 16 29 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.05 1.27 6.86 -51.93 -0.36 0.91 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.12 2.59 5.83 -51.93 -0.30 2.29 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -30.88 339.37 -6.70 -37.58 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.25 Total: 2.50 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 0.67 Total: -10.69 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.55 Total: -52.77 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -2.16 Total: -49.43 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 53.40 SS G_CDS: -0.60 Total: 52.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.88 -6.70 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331281802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.208 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds