Wall clock time and date at job start Tue Mar 31 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99840 * 2 1 4 4 N 1.46500 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.40084 * 126.03708 * 270.28682 * 4 3 2 6 6 C 1.30834 * 108.20770 * 180.17238 * 5 4 3 7 7 C 1.39876 * 108.20073 * 359.58566 * 6 5 4 8 8 C 1.34947 * 126.04040 * 90.00132 * 4 3 2 9 9 S 1.76211 * 126.12484 * 359.96219 * 8 4 3 10 10 O 1.42095 * 106.39897 * 23.55989 * 9 8 4 11 11 O 1.42098 * 106.39807 * 156.48103 * 9 8 4 12 12 N 1.65599 * 107.21370 * 270.02109 * 9 8 4 13 13 C 1.46503 * 119.99829 * 269.99287 * 12 9 8 14 14 C 1.46496 * 120.00167 * 90.00442 * 12 9 8 15 15 H 1.08994 * 109.47147 * 359.97438 * 14 12 9 16 16 C 1.53006 * 109.47148 * 239.99510 * 14 12 9 17 17 C 1.50705 * 109.47307 * 119.99694 * 14 12 9 18 18 H 1.07992 * 119.99982 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99770 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00355 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99899 * 179.97438 * 19 17 14 22 22 H 1.48492 * 109.47235 * 59.99506 * 21 19 17 23 23 H 1.48499 * 109.47438 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46855 * 299.99910 * 21 19 17 25 25 H 1.09001 * 109.46445 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46801 * 300.00199 * 1 2 3 27 27 H 1.08994 * 109.47000 * 60.00292 * 1 2 3 28 28 H 1.08996 * 109.47660 * 60.00031 * 3 2 1 29 29 H 1.09011 * 109.47126 * 299.99861 * 3 2 1 30 30 H 1.08002 * 125.90318 * 179.85840 * 6 5 4 31 31 H 1.07992 * 126.04019 * 180.28605 * 7 6 5 32 32 H 1.09006 * 109.46448 * 90.01184 * 13 12 9 33 33 H 1.08991 * 109.47295 * 210.00127 * 13 12 9 34 34 H 1.08997 * 109.47305 * 330.01245 * 13 12 9 35 35 H 1.09001 * 109.46622 * 300.00004 * 16 14 12 36 36 H 1.09004 * 109.46793 * 59.99786 * 16 14 12 37 37 H 1.08996 * 109.47055 * 179.97438 * 16 14 12 38 38 H 0.97002 * 119.99840 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4707 1.1898 -0.0006 5 7 4.2923 1.1189 1.1318 6 6 5.5342 1.0264 0.7307 7 6 5.5426 1.0258 -0.6680 8 6 4.2617 1.1274 -1.0921 9 16 3.7230 1.1694 -2.7693 10 8 2.4574 1.8155 -2.7681 11 8 4.8290 1.6279 -3.5346 12 7 3.4486 -0.3958 -3.2353 13 6 4.5310 -1.1833 -3.8306 14 6 2.1234 -0.9930 -3.0524 15 1 1.4548 -0.2615 -2.5987 16 6 2.2364 -2.2154 -2.1392 17 6 1.5734 -1.4148 -4.3906 18 1 2.1528 -1.2538 -5.2876 19 6 0.3300 -2.0053 -4.4697 20 7 -0.3758 -2.2009 -3.3775 21 14 -0.3520 -2.5276 -6.1285 22 1 0.5587 -3.5245 -6.7465 23 1 -1.6958 -3.1318 -5.9432 24 1 -0.4613 -1.3409 -7.0146 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 6.4025 0.9575 1.3692 31 1 6.4170 0.9563 -1.2981 32 1 5.0756 -1.7054 -3.0438 33 1 4.1115 -1.9104 -4.5258 34 1 5.2114 -0.5202 -4.3649 35 1 2.9052 -2.9470 -2.5926 36 1 2.6342 -1.9102 -1.1713 37 1 1.2503 -2.6594 -2.0028 38 1 -1.2508 -2.6161 -3.4333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331291203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:50 Heat of formation + Delta-G solvation = -19.475779 kcal Electronic energy + Delta-G solvation = -24886.000069 eV Core-core repulsion = 21279.843948 eV Total energy + Delta-G solvation = -3606.156121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.09683 -37.65874 -36.84388 -36.21789 -35.49849 -32.63436 -32.40259 -30.34401 -29.10317 -26.91411 -25.57256 -25.19204 -25.04843 -22.04412 -21.24347 -20.71831 -18.62789 -17.74477 -17.04551 -16.55827 -16.40412 -15.61088 -15.41606 -15.35253 -14.63485 -14.36333 -14.25017 -13.68022 -13.55478 -13.23369 -12.95532 -12.66259 -12.28741 -12.10610 -11.96694 -11.63327 -11.38400 -11.33838 -11.25974 -11.16636 -10.93303 -10.84827 -10.70130 -10.47493 -10.20653 -10.11209 -9.72451 -9.47793 -9.27592 -8.84548 -8.47355 -8.04813 -6.10628 -4.17001 0.69226 1.35881 2.30587 2.67861 3.27740 3.32031 3.35164 3.51019 4.01831 4.22956 4.36549 4.50156 4.73696 5.06954 5.21097 5.35066 5.42730 5.52418 5.57641 5.64793 5.79462 5.86270 6.09194 6.23932 6.29214 6.55540 6.63890 6.70616 6.85929 6.94663 7.10518 7.29892 7.40117 7.53146 7.61613 7.77759 8.05399 8.24915 8.84006 9.48006 10.94395 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.006761 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.766495 B = 4140.439066 C = 4949.174327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.389 6.389 3 C 0.275 3.725 4 N -0.303 5.303 5 N -0.258 5.258 6 C 0.030 3.970 7 C -0.162 4.162 8 C -0.472 4.472 9 S 2.695 3.305 10 O -0.949 6.949 11 O -0.957 6.957 12 N -0.968 5.968 13 C 0.092 3.908 14 C 0.272 3.728 15 H 0.063 0.937 16 C -0.142 4.142 17 C -0.523 4.523 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.887 5.887 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.100 0.900 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.192 0.808 31 H 0.162 0.838 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.017 0.983 37 H 0.091 0.909 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 4.256 6.302 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.307 6.307 3 C 0.115 3.885 4 N -0.090 5.090 5 N -0.082 5.082 6 C -0.156 4.156 7 C -0.194 4.194 8 C -0.678 4.678 9 S 2.778 3.222 10 O -0.939 6.939 11 O -0.946 6.946 12 N -0.810 5.810 13 C -0.054 4.054 14 C 0.170 3.830 15 H 0.080 0.920 16 C -0.202 4.202 17 C -0.562 4.562 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.119 0.881 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.140 0.860 30 H 0.209 0.791 31 H 0.180 0.820 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.036 0.964 37 H 0.110 0.890 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.382 4.827 6.918 10.006 hybrid contribution 0.270 -0.648 -0.708 0.997 sum 5.652 4.179 6.210 9.379 Atomic orbital electron populations 1.22739 0.77850 1.04426 0.99899 1.87904 1.21679 1.25630 1.95494 1.23034 0.73176 0.87513 1.04780 1.48204 1.05792 1.53272 1.01745 1.77201 1.02181 1.19270 1.09506 1.24079 0.95378 1.01237 0.94907 1.21577 0.95565 1.06758 0.95470 1.34333 1.00318 1.15265 1.17884 1.02206 0.73307 0.74178 0.72499 1.93500 1.40721 1.73723 1.85944 1.93542 1.54768 1.80118 1.66208 1.57383 1.19964 1.31204 1.72403 1.21430 0.88892 0.96904 0.98190 1.18834 0.75507 0.92570 0.96118 0.91969 1.22042 1.02943 0.99025 0.96160 1.21309 1.02152 1.40075 0.92705 0.91912 1.24855 0.96515 0.95451 0.96748 1.69855 1.12280 1.43386 1.26967 0.86575 0.78046 0.78880 0.83989 1.20256 1.21254 1.20189 0.88115 0.94685 0.92398 0.89655 0.86049 0.79123 0.81998 0.94034 0.89155 0.91506 0.95417 0.96386 0.89021 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 11.01 101.05 1.11 1.85 16 2 O -0.39 -7.17 9.65 -35.23 -0.34 -7.51 16 3 C 0.27 4.66 6.96 59.85 0.42 5.08 16 4 N -0.30 -5.47 3.88 -65.26 -0.25 -5.72 16 5 N -0.26 -4.37 12.58 30.63 0.39 -3.99 16 6 C 0.03 0.42 12.03 -17.36 -0.21 0.21 16 7 C -0.16 -2.46 10.55 -40.01 -0.42 -2.89 16 8 C -0.47 -8.44 7.00 -17.23 -0.12 -8.56 16 9 S 2.69 52.78 5.75 -107.50 -0.62 52.16 16 10 O -0.95 -20.35 13.80 -57.17 -0.79 -21.14 16 11 O -0.96 -19.06 16.45 -57.17 -0.94 -20.00 16 12 N -0.97 -19.87 3.06 -115.85 -0.35 -20.22 16 13 C 0.09 1.60 9.65 59.85 0.58 2.18 16 14 C 0.27 6.40 2.62 -69.08 -0.18 6.22 16 15 H 0.06 1.57 6.45 -51.93 -0.34 1.24 16 16 C -0.14 -3.26 8.86 37.16 0.33 -2.93 16 17 C -0.52 -13.43 7.99 -34.44 -0.28 -13.70 16 18 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 19 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -23.07 11.32 55.43 0.63 -22.45 16 21 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.12 2.12 5.46 -51.92 -0.28 1.83 16 30 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.62 7.02 -51.93 -0.36 1.25 16 34 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 35 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 36 H 0.02 0.39 7.41 -51.93 -0.39 0.00 16 37 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 38 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -30.85 328.90 -6.14 -36.99 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.93 Total: 2.57 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 1.13 Total: -10.90 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.40 Total: -52.37 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -2.07 Total: -48.66 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 52.78 SS G_CDS: -0.62 Total: 52.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.85 -6.14 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331291203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.513 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds