Wall clock time and date at job start Tue Mar 31 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00597 * 2 1 4 4 O 1.20829 * 119.99789 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00343 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.58560 * 1.49978 * 5 3 2 7 7 C 1.53195 * 109.58420 * 121.78159 * 5 3 2 8 8 H 1.09000 * 109.49834 * 54.47141 * 7 5 3 9 9 O 1.42899 * 109.49552 * 294.40762 * 7 5 3 10 10 C 1.53043 * 109.31212 * 174.42517 * 7 5 3 11 11 C 1.53039 * 109.53364 * 298.63340 * 10 7 5 12 12 C 1.53190 * 109.31542 * 61.36524 * 11 10 7 13 13 N 1.46922 * 108.77573 * 305.36461 * 12 11 10 14 14 C 1.34775 * 120.62993 * 233.58097 * 13 12 11 15 15 O 1.21282 * 120.00174 * 186.05933 * 14 13 12 16 16 C 1.50701 * 119.99748 * 6.06793 * 14 13 12 17 17 S 1.81001 * 109.47103 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00228 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99825 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00276 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00442 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99873 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47063 * 90.00285 * 22 20 18 24 24 H 1.48497 * 109.47456 * 209.99921 * 22 20 18 25 25 H 1.48504 * 109.47194 * 330.00463 * 22 20 18 26 26 H 1.09001 * 109.47391 * 59.99613 * 1 2 3 27 27 H 1.08996 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47087 * 299.99882 * 1 2 3 29 29 H 0.96703 * 114.00125 * 180.02562 * 9 7 5 30 30 H 1.08998 * 109.45774 * 58.65320 * 10 7 5 31 31 H 1.09005 * 109.45648 * 178.61785 * 10 7 5 32 32 H 1.09000 * 109.49986 * 301.41056 * 11 10 7 33 33 H 1.08998 * 109.52136 * 181.33605 * 11 10 7 34 34 H 1.09001 * 109.58669 * 185.57365 * 12 11 10 35 35 H 1.09005 * 109.69971 * 65.22477 * 12 11 10 36 36 H 1.09001 * 109.46865 * 299.99134 * 16 14 13 37 37 H 1.08997 * 109.47372 * 59.99810 * 16 14 13 38 38 H 0.96993 * 120.00567 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9850 0.2686 -0.0259 7 6 4.0399 2.0604 -1.2263 8 1 3.5478 3.0328 -1.2478 9 8 3.7133 1.3343 -2.4129 10 6 5.5557 2.2566 -1.1476 11 6 5.9029 3.0630 0.1059 12 6 5.4504 2.2887 1.3479 13 7 4.0228 1.9694 1.2121 14 6 3.1485 2.3070 2.1806 15 8 1.9939 1.9425 2.1093 16 6 3.6055 3.1374 3.3522 17 16 2.2113 3.4211 4.4711 18 6 3.0065 4.3865 5.7122 19 1 4.0563 4.6235 5.6218 20 6 2.2840 4.8414 6.8065 21 7 2.8779 5.5630 7.7334 22 14 0.4684 4.4309 6.9631 23 1 0.3118 3.1538 7.7047 24 1 -0.2235 5.5189 7.6998 25 1 -0.1266 4.2933 5.6094 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9849 1.7738 -3.2303 30 1 6.0457 1.2841 -1.1012 31 1 5.8986 2.7942 -2.0317 32 1 5.3933 4.0259 0.0719 33 1 6.9802 3.2229 0.1493 34 1 5.6051 2.9007 2.2365 35 1 6.0246 1.3662 1.4352 36 1 4.3974 2.6102 3.8843 37 1 3.9837 4.0947 2.9935 38 1 2.3731 5.8807 8.4983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331307726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:41 Heat of formation + Delta-G solvation = -156.537432 kcal Electronic energy + Delta-G solvation = -23712.057868 eV Core-core repulsion = 20067.665557 eV Total energy + Delta-G solvation = -3644.392311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19157 -39.18117 -38.18208 -36.10570 -35.96791 -32.70404 -32.45487 -31.55818 -28.95029 -27.72283 -25.81729 -25.53432 -23.84142 -21.49637 -21.22824 -19.26588 -18.01415 -17.89995 -17.25922 -16.82404 -16.48742 -15.79568 -15.63758 -15.33611 -14.97304 -14.78675 -14.47456 -14.12326 -13.81065 -13.57852 -13.27638 -13.15315 -12.83650 -12.74698 -12.57112 -12.11827 -11.82979 -11.53594 -11.39316 -11.34026 -11.24045 -11.02065 -10.65002 -10.48627 -10.38326 -10.04233 -9.87053 -9.48281 -9.02168 -8.86593 -8.51274 -6.94154 -6.30774 -4.02720 2.15159 2.65514 2.77327 2.86338 3.13442 3.32048 3.50363 3.53522 3.88007 4.26048 4.31803 4.44954 4.54339 4.57064 4.74807 4.85162 4.91386 5.05773 5.08479 5.18579 5.23363 5.30939 5.35383 5.43728 5.49787 5.54626 5.58358 5.66852 5.73908 5.89321 5.91156 6.19728 6.69426 7.15562 7.23364 7.92101 8.05032 8.27398 8.38930 9.15539 10.78371 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.004669 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.539904 B = 5995.267020 C = 7179.992754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.359 6.359 3 C 0.487 3.513 4 O -0.491 6.491 5 C 0.166 3.834 6 H 0.106 0.894 7 C 0.102 3.898 8 H 0.074 0.926 9 O -0.562 6.562 10 C -0.148 4.148 11 C -0.137 4.137 12 C 0.107 3.893 13 N -0.609 5.609 14 C 0.532 3.468 15 O -0.488 6.488 16 C -0.116 4.116 17 S -0.138 6.138 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.098 3.902 21 N -0.880 5.880 22 Si 0.855 3.145 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.385 0.615 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 -9.025 -19.917 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.276 6.276 3 C 0.329 3.671 4 O -0.377 6.377 5 C 0.060 3.940 6 H 0.124 0.876 7 C 0.042 3.958 8 H 0.092 0.908 9 O -0.367 6.367 10 C -0.185 4.185 11 C -0.176 4.176 12 C -0.015 4.015 13 N -0.350 5.350 14 C 0.320 3.680 15 O -0.361 6.361 16 C -0.266 4.266 17 S 0.088 5.912 18 C -0.669 4.669 19 H 0.107 0.893 20 C -0.111 4.111 21 N -0.516 5.516 22 Si 0.680 3.320 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.629 -9.580 -19.399 22.125 hybrid contribution 0.805 0.891 0.033 1.202 sum 5.434 -8.689 -19.366 21.911 Atomic orbital electron populations 1.23152 0.76261 1.02908 1.02644 1.86365 1.23461 1.33151 1.84611 1.22317 0.90301 0.82069 0.72419 1.90675 1.66299 1.36109 1.44580 1.20266 0.89775 0.98178 0.85758 0.87635 1.21988 0.94870 0.94813 0.84138 0.90781 1.86473 1.84166 1.50390 1.15700 1.22245 0.95270 1.01826 0.99202 1.21953 1.02348 0.99585 0.93695 1.21898 0.79390 1.00579 0.99635 1.48011 1.09021 1.60809 1.17156 1.20512 0.85086 0.79484 0.82921 1.90715 1.17936 1.52307 1.75154 1.23263 1.04854 1.01682 0.96840 1.84893 1.13133 1.69963 1.23197 1.22296 0.99753 1.37578 1.07299 0.89331 1.24683 0.98774 0.93426 0.94247 1.69928 1.36999 1.34209 1.10487 0.86759 0.85036 0.79004 0.81221 1.19184 1.19875 1.15932 0.92483 0.88681 0.91367 0.76652 0.90364 0.90550 0.90652 0.89539 0.88094 0.90482 0.88223 0.88170 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.68 16 2 O -0.36 -5.93 10.56 -41.12 -0.43 -6.36 16 3 C 0.49 8.53 4.31 36.01 0.16 8.68 16 4 O -0.49 -10.15 14.33 -26.93 -0.39 -10.54 16 5 C 0.17 2.26 3.05 -68.75 -0.21 2.05 16 6 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 7 C 0.10 1.07 2.95 -26.61 -0.08 0.99 16 8 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 9 O -0.56 -5.44 13.10 -35.23 -0.46 -5.90 16 10 C -0.15 -1.04 5.51 -26.69 -0.15 -1.18 16 11 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 12 C 0.11 1.02 6.35 -3.71 -0.02 1.00 16 13 N -0.61 -8.54 2.97 -166.54 -0.49 -9.03 16 14 C 0.53 9.95 7.40 -10.99 -0.08 9.87 16 15 O -0.49 -10.99 11.61 -21.03 -0.24 -11.23 16 16 C -0.12 -2.26 4.51 36.01 0.16 -2.09 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 18 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 22 Si 0.86 21.92 27.74 -169.99 -4.71 17.21 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 29 H 0.39 1.87 9.08 45.56 0.41 2.29 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.96 5.93 -51.93 -0.31 0.66 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.74 7.70 -51.92 -0.40 1.34 16 37 H 0.10 1.81 7.94 -51.92 -0.41 1.40 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -37.55 328.23 -6.61 -44.16 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.50 Total: 0.03 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 0.90 Total: 7.92 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.28 Total: -34.70 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -1.53 Total: -34.04 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.55 -6.61 -44.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331307726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.375 kcal (2) G-P(sol) polarization free energy of solvation -37.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds