Wall clock time and date at job start Tue Mar 31 2020 03:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99674 * 2 1 4 4 O 1.20827 * 119.99751 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00101 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.58064 * 1.08977 * 5 3 2 7 7 C 1.53193 * 109.58753 * 121.52165 * 5 3 2 8 8 H 1.08996 * 109.49311 * 294.37013 * 7 5 3 9 9 O 1.42893 * 109.49629 * 54.47066 * 7 5 3 10 10 C 1.53036 * 109.30919 * 174.42075 * 7 5 3 11 11 C 1.53038 * 109.54305 * 298.63406 * 10 7 5 12 12 C 1.53188 * 109.30979 * 61.36319 * 11 10 7 13 13 N 1.46922 * 109.58223 * 240.81226 * 5 3 2 14 14 C 1.34774 * 120.63721 * 6.58195 * 13 5 3 15 15 O 1.21286 * 119.99552 * 6.06764 * 14 13 5 16 16 C 1.50699 * 120.00504 * 186.07281 * 14 13 5 17 17 S 1.80989 * 109.47458 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00421 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00171 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00498 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99754 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46942 * 60.00045 * 22 20 18 24 24 H 1.48500 * 109.47089 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47133 * 300.00030 * 22 20 18 26 26 H 1.09004 * 109.47177 * 299.99612 * 1 2 3 27 27 H 1.09004 * 109.46471 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47377 * 60.00302 * 1 2 3 29 29 H 0.96699 * 113.99887 * 179.97438 * 9 7 5 30 30 H 1.09005 * 109.45923 * 178.60739 * 10 7 5 31 31 H 1.09009 * 109.44966 * 58.65425 * 10 7 5 32 32 H 1.08997 * 109.49508 * 301.41922 * 11 10 7 33 33 H 1.08993 * 109.52661 * 181.33537 * 11 10 7 34 34 H 1.09001 * 109.59078 * 185.57603 * 12 11 10 35 35 H 1.09003 * 109.58914 * 65.15676 * 12 11 10 36 36 H 1.09000 * 109.46775 * 299.99856 * 16 14 13 37 37 H 1.08999 * 109.46961 * 59.99552 * 16 14 13 38 38 H 0.97000 * 120.00254 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 -0.0006 6 1 3.9849 0.2688 -0.0205 7 6 4.0391 2.0558 -1.2309 8 1 3.7901 1.4978 -2.1335 9 8 3.3938 3.3303 -1.2640 10 6 5.5548 2.2525 -1.1537 11 6 5.9027 3.0640 0.0963 12 6 5.4509 2.2948 1.3416 13 7 4.0231 1.9748 1.2079 14 6 3.1492 2.3170 2.1751 15 8 1.9945 1.9524 2.1058 16 6 3.6066 3.1529 3.3426 17 16 2.2128 3.4421 4.4604 18 6 3.0083 4.4131 5.6968 19 1 4.0582 4.6496 5.6052 20 6 2.2862 4.8733 6.7892 21 7 1.0070 4.5839 6.9017 22 14 3.1299 5.9022 8.1003 23 1 3.6755 7.1384 7.4843 24 1 2.1474 6.2651 9.1530 25 1 4.2377 5.1205 8.7061 26 1 -0.3634 0.5138 0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 -0.8899 29 1 3.6470 3.8799 -2.0183 30 1 5.8973 2.7863 -2.0402 31 1 6.0449 1.2801 -1.1035 32 1 5.3929 4.0267 0.0586 33 1 6.9799 3.2242 0.1385 34 1 5.6059 2.9103 2.2277 35 1 6.0253 1.3726 1.4299 36 1 4.3985 2.6281 3.8770 37 1 3.9848 4.1084 2.9793 38 1 0.5022 4.9058 7.6649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331307728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:48 Heat of formation + Delta-G solvation = -151.554338 kcal Electronic energy + Delta-G solvation = -23867.395459 eV Core-core repulsion = 20223.219231 eV Total energy + Delta-G solvation = -3644.176228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00717 -39.03325 -37.96708 -35.86322 -35.43477 -32.45148 -32.38330 -31.54279 -28.83592 -27.62251 -25.68222 -25.32831 -23.83356 -21.23774 -21.09072 -19.08792 -17.88463 -17.48274 -17.00239 -16.53777 -16.34550 -15.73373 -15.52694 -15.14696 -14.94706 -14.77577 -14.37761 -13.91966 -13.59545 -13.21488 -13.14812 -12.92976 -12.61132 -12.54321 -12.15022 -11.94534 -11.70638 -11.69500 -11.35340 -11.01563 -11.00904 -10.94943 -10.74440 -10.36186 -10.20609 -9.79491 -9.74089 -9.19477 -9.02836 -8.60351 -8.18215 -6.45565 -6.18045 -3.88287 2.38448 2.89409 3.00915 3.14132 3.25503 3.28910 3.31856 3.63021 3.93691 4.23026 4.44090 4.51704 4.60818 4.74995 4.93859 5.05975 5.09702 5.16701 5.21598 5.35167 5.35779 5.38508 5.48565 5.52474 5.57414 5.65905 5.74746 5.85195 5.89759 6.06257 6.13343 6.42116 6.82946 7.43983 7.52958 7.61950 8.27205 8.37889 8.55134 9.26687 10.89346 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.004534 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.565272 B = 6173.981334 C = 7242.654719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.370 6.370 3 C 0.470 3.530 4 O -0.459 6.459 5 C 0.167 3.833 6 H 0.108 0.892 7 C 0.100 3.900 8 H 0.068 0.932 9 O -0.533 6.533 10 C -0.149 4.149 11 C -0.135 4.135 12 C 0.112 3.888 13 N -0.606 5.606 14 C 0.536 3.464 15 O -0.491 6.491 16 C -0.144 4.144 17 S -0.057 6.057 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.372 0.628 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 -7.934 -18.541 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.287 6.287 3 C 0.309 3.691 4 O -0.342 6.342 5 C 0.061 3.939 6 H 0.125 0.875 7 C 0.039 3.961 8 H 0.085 0.915 9 O -0.337 6.337 10 C -0.187 4.187 11 C -0.173 4.173 12 C -0.011 4.011 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.364 6.364 16 C -0.294 4.294 17 S 0.170 5.830 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.542 -8.366 -17.956 21.572 hybrid contribution 2.082 1.321 0.394 2.497 sum 10.623 -7.045 -17.563 21.701 Atomic orbital electron populations 1.23115 0.76379 1.02701 1.02692 1.86358 1.23429 1.33680 1.85277 1.22377 0.90377 0.82124 0.74177 1.90717 1.65688 1.35761 1.42025 1.20621 0.89938 0.96892 0.86438 0.87484 1.21971 0.91966 0.86521 0.95594 0.91463 1.86883 1.68506 1.27277 1.51008 1.22222 0.95457 1.01702 0.99274 1.21868 1.01372 1.00220 0.93866 1.21781 0.79778 1.00024 0.99482 1.47947 1.08679 1.60329 1.17623 1.20410 0.85052 0.79329 0.82709 1.90698 1.17904 1.52573 1.75218 1.23490 1.06752 1.01082 0.98121 1.85465 1.09048 1.68413 1.20086 1.22823 0.98381 1.38270 1.08929 0.91017 1.24984 0.94861 0.96080 0.97603 1.70013 1.06964 1.43406 1.29916 0.86228 0.78990 0.80089 0.80208 1.19939 1.20819 1.19950 0.91279 0.88862 0.92654 0.78146 0.90770 0.90511 0.90237 0.90443 0.88577 0.91116 0.89277 0.89095 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.56 101.05 1.07 1.70 16 2 O -0.37 -6.02 10.56 -41.03 -0.43 -6.45 16 3 C 0.47 8.33 4.52 36.01 0.16 8.50 16 4 O -0.46 -9.97 13.16 -29.52 -0.39 -10.36 16 5 C 0.17 2.26 3.17 -68.75 -0.22 2.05 16 6 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 7 C 0.10 1.02 3.30 -26.61 -0.09 0.93 16 8 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 9 O -0.53 -6.81 10.97 -55.03 -0.60 -7.42 16 10 C -0.15 -1.04 5.61 -26.69 -0.15 -1.19 16 11 C -0.14 -1.14 5.94 -26.61 -0.16 -1.30 16 12 C 0.11 1.20 6.35 -3.71 -0.02 1.17 16 13 N -0.61 -9.21 2.91 -166.53 -0.49 -9.70 16 14 C 0.54 11.01 7.40 -10.99 -0.08 10.93 16 15 O -0.49 -11.95 11.60 -20.93 -0.24 -12.19 16 16 C -0.14 -3.07 4.51 36.01 0.16 -2.91 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.56 9.50 30.94 0.29 -15.26 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 21 N -0.87 -26.69 13.22 55.49 0.73 -25.95 16 22 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.37 2.92 9.08 45.56 0.41 3.34 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.10 1.07 5.93 -51.93 -0.31 0.77 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 37 H 0.09 1.84 7.94 -51.92 -0.41 1.43 16 38 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -39.50 327.86 -7.29 -46.79 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.45 Total: 0.84 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.87 Total: 6.66 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.25 Total: -35.65 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.67 Total: -36.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -39.50 -7.29 -46.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331307728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.767 kcal (2) G-P(sol) polarization free energy of solvation -39.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds