Wall clock time and date at job start Tue Mar 31 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 116.99991 * 2 1 4 4 O 1.20823 * 119.99935 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00343 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.58354 * 352.98402 * 5 3 2 7 7 C 1.53192 * 109.58546 * 232.56296 * 5 3 2 8 8 H 1.08998 * 109.49897 * 305.52615 * 7 5 3 9 9 O 1.42898 * 109.49988 * 65.62361 * 7 5 3 10 10 C 1.53045 * 109.31023 * 185.57464 * 7 5 3 11 11 C 1.53044 * 109.53506 * 61.36583 * 10 7 5 12 12 C 1.53188 * 109.31171 * 298.63341 * 11 10 7 13 13 N 1.46920 * 109.58796 * 113.26984 * 5 3 2 14 14 C 1.34772 * 120.63146 * 353.42065 * 13 5 3 15 15 O 1.21281 * 120.00120 * 4.08829 * 14 13 5 16 16 C 1.50707 * 120.00502 * 184.08838 * 14 13 5 17 17 S 1.80992 * 109.47468 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99942 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99841 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99996 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99708 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99990 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47056 * 89.99825 * 22 20 18 24 24 H 1.48494 * 109.47355 * 209.99427 * 22 20 18 25 25 H 1.48500 * 109.47361 * 329.99799 * 22 20 18 26 26 H 1.08999 * 109.47237 * 60.00366 * 1 2 3 27 27 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47181 * 299.99581 * 1 2 3 29 29 H 0.96704 * 114.00160 * 179.97438 * 9 7 5 30 30 H 1.08996 * 109.46215 * 301.34717 * 10 7 5 31 31 H 1.09003 * 109.44788 * 181.37518 * 10 7 5 32 32 H 1.09006 * 109.49751 * 178.68326 * 11 10 7 33 33 H 1.09000 * 109.52586 * 58.60351 * 11 10 7 34 34 H 1.09011 * 109.58614 * 294.84686 * 12 11 10 35 35 H 1.09004 * 109.58914 * 174.43050 * 12 11 10 36 36 H 1.09003 * 109.46402 * 300.00444 * 16 14 13 37 37 H 1.09000 * 109.46708 * 59.99693 * 16 14 13 38 38 H 0.97007 * 119.99643 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9846 0.2762 0.1245 7 6 4.0336 2.1778 1.1454 8 1 3.5415 3.1473 1.0686 9 8 3.7015 1.5715 2.3961 10 6 5.5498 2.3658 1.0555 11 6 5.9035 3.0450 -0.2695 12 6 5.4574 2.1520 -1.4315 13 7 4.0290 1.8471 -1.2722 14 6 3.1596 2.0882 -2.2734 15 8 1.9731 1.9025 -2.1042 16 6 3.6617 2.5886 -3.6034 17 16 2.2635 2.8136 -4.7304 18 6 3.1143 3.3872 -6.1628 19 1 4.1884 3.4982 -6.1446 20 6 2.4042 3.6953 -7.3149 21 7 3.0398 4.1234 -8.3851 22 14 0.5464 3.5026 -7.3466 23 1 -0.0904 4.7721 -6.9127 24 1 0.1063 3.1745 -8.7263 25 1 0.1465 2.4082 -6.4260 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9690 2.0895 3.1676 30 1 6.0400 1.3937 1.1076 31 1 5.8880 2.9880 1.8842 32 1 6.9812 3.1998 -0.3227 33 1 5.3943 4.0066 -0.3334 34 1 6.0320 1.2257 -1.4220 35 1 5.6168 2.6735 -2.3753 36 1 4.1732 3.5410 -3.4635 37 1 4.3557 1.8622 -4.0264 38 1 2.5436 4.3384 -9.1904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331307729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:52 Heat of formation + Delta-G solvation = -156.389610 kcal Electronic energy + Delta-G solvation = -23708.068411 eV Core-core repulsion = 20063.682510 eV Total energy + Delta-G solvation = -3644.385901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18674 -39.17271 -38.18065 -36.10922 -35.94699 -32.72148 -32.46280 -31.55325 -28.95038 -27.70891 -25.82392 -25.54087 -23.83862 -21.50257 -21.21768 -19.26584 -18.01337 -17.87969 -17.27063 -16.81730 -16.49867 -15.80201 -15.60364 -15.34214 -14.97648 -14.81347 -14.48805 -14.10819 -13.82028 -13.51619 -13.28372 -13.16014 -12.83113 -12.71290 -12.57914 -12.19545 -11.81747 -11.52549 -11.40148 -11.34387 -11.25061 -11.02610 -10.65876 -10.48946 -10.35639 -10.03440 -9.87567 -9.43151 -9.02826 -8.88929 -8.52596 -6.95419 -6.31560 -4.03673 2.14744 2.61707 2.77078 2.91028 3.14246 3.32145 3.49134 3.52820 3.86847 4.25645 4.31037 4.45930 4.54350 4.55868 4.75451 4.85305 4.92205 5.05670 5.07747 5.18273 5.21991 5.32190 5.36005 5.45176 5.50079 5.54301 5.57411 5.66483 5.75626 5.88815 5.90393 6.18841 6.71254 7.14815 7.23686 7.91353 8.06078 8.27438 8.38262 9.14742 10.77578 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.004649 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.375035 B = 6021.643124 C = 7191.254512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.361 6.361 3 C 0.487 3.513 4 O -0.490 6.490 5 C 0.165 3.835 6 H 0.106 0.894 7 C 0.102 3.898 8 H 0.075 0.925 9 O -0.562 6.562 10 C -0.148 4.148 11 C -0.137 4.137 12 C 0.107 3.893 13 N -0.608 5.608 14 C 0.529 3.471 15 O -0.487 6.487 16 C -0.117 4.117 17 S -0.138 6.138 18 C -0.522 4.522 19 H 0.089 0.911 20 C 0.097 3.903 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.385 0.615 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -5.951 20.914 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.278 6.278 3 C 0.329 3.671 4 O -0.375 6.375 5 C 0.060 3.940 6 H 0.124 0.876 7 C 0.042 3.958 8 H 0.093 0.907 9 O -0.368 6.368 10 C -0.186 4.186 11 C -0.176 4.176 12 C -0.015 4.015 13 N -0.349 5.349 14 C 0.318 3.682 15 O -0.360 6.360 16 C -0.267 4.267 17 S 0.088 5.912 18 C -0.669 4.669 19 H 0.107 0.893 20 C -0.111 4.111 21 N -0.516 5.516 22 Si 0.680 3.320 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.294 -6.327 20.564 21.940 hybrid contribution 0.830 0.797 -0.151 1.161 sum 5.124 -5.530 20.413 21.761 Atomic orbital electron populations 1.23146 0.76253 1.02905 1.02617 1.86367 1.23496 1.33228 1.84687 1.22279 0.90269 0.82077 0.72466 1.90652 1.66213 1.36123 1.44559 1.20323 0.89807 0.98992 0.84910 0.87621 1.21990 0.94737 0.95796 0.83243 0.90685 1.86467 1.84217 1.51029 1.15057 1.22252 0.95329 1.02311 0.98687 1.21953 1.02337 0.99595 0.93666 1.21906 0.79407 0.99986 1.00240 1.48040 1.09116 1.65966 1.11752 1.20573 0.85942 0.76603 0.85106 1.90749 1.15654 1.49840 1.79771 1.23275 1.04732 1.04351 0.94326 1.84894 1.09886 1.87376 1.09047 1.22295 0.96957 1.51062 0.96634 0.89317 1.24685 0.98994 0.93210 0.94247 1.69934 1.36473 1.42658 1.02521 0.86751 0.85187 0.81041 0.78975 1.19179 1.19874 1.15984 0.91351 0.88702 0.92511 0.76667 0.90367 0.90560 0.89522 0.90694 0.90471 0.88092 0.88247 0.88058 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.56 101.05 1.07 1.69 16 2 O -0.36 -6.00 10.56 -42.08 -0.44 -6.45 16 3 C 0.49 8.54 4.27 36.01 0.15 8.70 16 4 O -0.49 -10.09 14.31 -26.93 -0.39 -10.47 16 5 C 0.17 2.25 3.06 -68.75 -0.21 2.04 16 6 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 7 C 0.10 1.09 2.92 -26.61 -0.08 1.01 16 8 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 9 O -0.56 -5.52 13.10 -35.23 -0.46 -5.98 16 10 C -0.15 -1.05 5.51 -26.69 -0.15 -1.19 16 11 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 12 C 0.11 1.01 6.33 -3.71 -0.02 0.99 16 13 N -0.61 -8.48 2.97 -166.53 -0.49 -8.97 16 14 C 0.53 9.84 7.59 -10.98 -0.08 9.76 16 15 O -0.49 -10.92 11.44 -22.00 -0.25 -11.17 16 16 C -0.12 -2.24 4.54 36.01 0.16 -2.08 16 17 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 18 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 22 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 26 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.39 1.92 9.08 45.56 0.41 2.34 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.10 0.96 5.96 -51.93 -0.31 0.65 16 36 H 0.10 1.76 7.52 -51.92 -0.39 1.37 16 37 H 0.10 1.77 8.09 -51.91 -0.42 1.35 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -37.40 328.08 -6.63 -44.02 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.49 Total: 0.16 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.89 Total: 7.88 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.28 Total: -34.56 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.54 Total: -34.07 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.40 -6.63 -44.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331307729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.368 kcal (2) G-P(sol) polarization free energy of solvation -37.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds