Wall clock time and date at job start Tue Mar 31 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47309 * 2 1 4 4 C 1.47197 * 109.47341 * 240.00235 * 2 1 3 5 5 N 2.60803 * 109.47217 * 240.00083 * 2 1 3 6 6 C 1.53001 * 109.47232 * 120.00262 * 2 1 3 7 7 N 1.46501 * 109.46892 * 294.99923 * 6 2 1 8 8 C 1.46506 * 120.00098 * 85.00151 * 7 6 2 9 9 S 1.65599 * 120.00111 * 264.99830 * 7 6 2 10 10 O 1.42099 * 106.40401 * 23.54139 * 9 7 6 11 11 O 1.42103 * 106.40122 * 156.46115 * 9 7 6 12 12 N 1.65600 * 107.21815 * 270.00257 * 9 7 6 13 13 C 1.47070 * 136.05594 * 269.62801 * 12 9 7 14 14 C 1.53753 * 87.88782 * 152.96491 * 13 12 9 15 15 O 1.42899 * 114.39367 * 272.67731 * 14 13 12 16 16 C 1.50695 * 114.26685 * 139.79184 * 14 13 12 17 17 H 1.08002 * 120.00313 * 266.47593 * 16 14 13 18 18 C 1.37882 * 120.00001 * 86.47587 * 16 14 13 19 19 N 1.31510 * 119.99904 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99949 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47215 * 59.99896 * 20 18 16 22 22 H 1.48497 * 109.46839 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46717 * 299.99967 * 20 18 16 24 24 C 1.47064 * 136.05970 * 90.00128 * 12 9 7 25 25 H 1.09003 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47258 * 299.99564 * 1 2 3 27 27 H 1.09001 * 109.47231 * 59.99890 * 1 2 3 28 28 H 1.09001 * 109.47188 * 175.00009 * 6 2 1 29 29 H 1.09001 * 109.47155 * 54.99522 * 6 2 1 30 30 H 1.09001 * 109.47060 * 270.00243 * 8 7 6 31 31 H 1.09004 * 109.47073 * 29.99732 * 8 7 6 32 32 H 1.09000 * 109.47212 * 149.99814 * 8 7 6 33 33 H 1.08999 * 113.46928 * 267.69805 * 13 12 9 34 34 H 1.09004 * 113.46787 * 38.12979 * 13 12 9 35 35 H 0.96709 * 114.00074 * 273.58549 * 15 14 13 36 36 H 0.97006 * 120.00073 * 180.02562 * 19 18 16 37 37 H 1.09001 * 113.46651 * 321.86328 * 24 12 9 38 38 H 1.09000 * 113.46673 * 92.24614 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0400 -0.7213 1.2492 7 7 1.6524 0.0353 2.4424 8 6 0.3292 -0.1644 3.0387 9 16 2.7100 1.1163 3.1171 10 8 3.6069 1.4987 2.0835 11 8 1.9217 2.0472 3.8460 12 7 3.6098 0.2893 4.2347 13 6 3.5004 -0.0100 5.6704 14 6 4.3294 -1.2786 5.4111 15 8 3.5583 -2.4198 5.0299 16 6 5.3514 -1.5793 6.4769 17 1 6.3662 -1.2262 6.3670 18 6 4.9911 -2.3051 7.5925 19 7 3.7556 -2.7354 7.7261 20 14 6.2579 -2.6771 8.9140 21 1 6.7831 -1.4037 9.4687 22 1 5.6230 -3.4662 10.0000 23 1 7.3746 -3.4577 8.3233 24 6 4.8732 -0.4634 4.2296 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2055 29 1 1.6053 -1.7198 1.2951 30 1 -0.3802 0.5311 2.5902 31 1 -0.0006 -1.1874 2.8568 32 1 0.3839 0.0142 4.1125 33 1 4.0067 0.7171 6.3052 34 1 2.4800 -0.2150 5.9946 35 1 3.2172 -2.9312 5.7765 36 1 3.5020 -3.2457 8.5111 37 1 5.0225 -1.0548 3.3263 38 1 5.7416 0.1444 4.4837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332015960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:36 Heat of formation + Delta-G solvation = -54.479451 kcal Electronic energy + Delta-G solvation = -23801.064561 eV Core-core repulsion = 20193.390567 eV Total energy + Delta-G solvation = -3607.673994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -38.65738 -38.20292 -36.92159 -36.07584 -35.53391 -34.00584 -32.73046 -32.18652 -28.17744 -27.88738 -25.12589 -24.93345 -24.65560 -23.15101 -19.74293 -18.42213 -17.87506 -17.78980 -17.11530 -16.66339 -16.24955 -15.30085 -15.02583 -14.82000 -14.37441 -14.23021 -13.83538 -13.42312 -13.28099 -13.16315 -13.05152 -12.93817 -12.69373 -12.28639 -12.15291 -12.07721 -11.81791 -11.77051 -11.72763 -11.54476 -11.37949 -11.34743 -11.08128 -11.02986 -10.85127 -10.52154 -10.27814 -9.40864 -9.12551 -8.79891 -8.59171 -8.11016 -6.40480 -4.49897 0.83308 2.61428 2.67699 3.10690 3.16066 3.21902 3.24837 3.68876 3.92386 4.17541 4.48828 4.56851 4.66669 4.83940 4.89843 5.04845 5.34963 5.40662 5.41543 5.48861 5.61162 5.73441 5.80104 5.91458 6.00748 6.04684 6.08470 6.21328 6.27715 6.51295 6.68078 6.77066 6.99830 7.43605 7.47551 7.64879 7.82646 8.53013 9.20836 9.46535 10.65888 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.004273 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.729787 B = 6550.481808 C = 6824.180606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.019 4.019 3 H 0.119 0.881 4 C 0.218 3.782 5 N -0.436 5.436 6 C 0.139 3.861 7 N -1.002 6.002 8 C 0.095 3.905 9 S 2.804 3.196 10 O -0.984 6.984 11 O -0.980 6.980 12 N -1.047 6.047 13 C 0.106 3.894 14 C 0.241 3.759 15 O -0.572 6.572 16 C -0.535 4.535 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.899 5.899 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.134 3.866 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.062 0.938 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 3.550 -7.122 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.043 4.043 3 H 0.137 0.863 4 C -0.100 4.100 5 N -0.111 5.111 6 C 0.011 3.989 7 N -0.840 5.840 8 C -0.051 4.051 9 S 2.815 3.185 10 O -0.968 6.968 11 O -0.964 6.964 12 N -0.890 5.890 13 C -0.020 4.020 14 C 0.198 3.802 15 O -0.385 6.385 16 C -0.573 4.573 17 H 0.089 0.911 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.199 1.199 24 C 0.009 3.991 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.793 3.903 -9.379 12.221 hybrid contribution 0.208 -0.465 1.713 1.787 sum -6.585 3.438 -7.667 10.675 Atomic orbital electron populations 1.21997 0.91655 1.03457 1.03741 1.19451 0.97773 1.00196 0.86855 0.86328 1.28953 0.93177 0.93547 0.94347 1.81213 1.08864 1.09486 1.11563 1.21124 1.01083 0.95216 0.81523 1.57911 1.27719 1.60651 1.37682 1.21582 0.82843 1.02247 0.98383 1.01157 0.72381 0.72662 0.72260 1.93567 1.64619 1.81165 1.57445 1.93574 1.70662 1.59051 1.73156 1.60065 1.35172 1.71141 1.22637 1.23656 1.01355 0.99524 0.77424 1.19722 0.88128 0.82704 0.89692 1.85989 1.71878 1.41069 1.39575 1.21487 0.97072 1.35211 1.03579 0.91054 1.25059 0.95616 0.94225 0.98071 1.69240 1.17175 1.37333 1.30249 0.86396 0.81070 0.78649 0.80427 1.19893 1.21054 1.19901 1.22800 0.84971 0.91389 0.99926 0.91505 0.89698 0.91811 0.89231 0.89036 0.92351 0.90726 0.90916 0.90395 0.92113 0.75014 0.91585 0.91970 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.66 37.15 0.32 -0.80 16 2 C -0.02 -0.19 2.97 -93.41 -0.28 -0.47 16 3 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.22 2.62 14.65 -20.76 -0.30 2.32 16 5 N -0.44 -6.33 18.54 42.16 0.78 -5.55 16 6 C 0.14 1.58 4.84 -4.04 -0.02 1.56 16 7 N -1.00 -13.04 3.15 -121.75 -0.38 -13.43 16 8 C 0.09 1.02 9.11 59.85 0.55 1.56 16 9 S 2.80 47.52 6.60 -107.50 -0.71 46.81 16 10 O -0.98 -17.99 17.11 -57.17 -0.98 -18.97 16 11 O -0.98 -18.61 17.21 -57.17 -0.98 -19.59 16 12 N -1.05 -19.77 4.29 -125.02 -0.54 -20.30 16 13 C 0.11 2.20 8.17 -8.37 -0.07 2.13 16 14 C 0.24 5.39 1.58 -91.13 -0.14 5.24 16 15 O -0.57 -13.30 13.55 -35.23 -0.48 -13.77 16 16 C -0.53 -12.84 8.70 -34.44 -0.30 -13.14 16 17 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 19 N -0.90 -21.92 11.01 55.43 0.61 -21.31 16 20 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.29 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.13 2.63 8.14 -8.51 -0.07 2.56 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.59 5.09 -51.92 -0.26 0.33 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 1.12 7.61 -51.93 -0.40 0.73 16 29 H 0.09 0.89 7.96 -51.93 -0.41 0.48 16 30 H 0.06 0.50 6.22 -51.93 -0.32 0.18 16 31 H 0.07 0.66 7.94 -51.93 -0.41 0.24 16 32 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 33 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.39 9.49 6.32 45.56 0.29 9.78 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -29.05 336.49 -7.46 -36.52 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.42 Total: 7.99 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.41 Total: 2.62 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.47 Total: -60.59 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.44 Total: -52.34 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: 47.52 SS G_CDS: -0.71 Total: 46.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.05 -7.46 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332015960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.964 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds