Wall clock time and date at job start Tue Mar 31 2020 04:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.47201 * 109.46938 * 119.99853 * 2 1 3 5 5 N 2.60799 * 109.46861 * 119.99999 * 2 1 3 6 6 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 7 7 N 1.46497 * 109.46926 * 65.00537 * 6 2 1 8 8 C 1.46508 * 119.99888 * 274.99617 * 7 6 2 9 9 S 1.65598 * 120.00361 * 94.99732 * 7 6 2 10 10 O 1.42102 * 106.40586 * 203.54028 * 9 7 6 11 11 O 1.42098 * 106.40286 * 336.45898 * 9 7 6 12 12 N 1.65606 * 107.22001 * 90.00037 * 9 7 6 13 13 C 1.47064 * 136.05298 * 269.63199 * 12 9 7 14 14 C 1.53762 * 87.88528 * 152.96269 * 13 12 9 15 15 O 1.42910 * 114.39093 * 272.67646 * 14 13 12 16 16 C 1.50695 * 114.26892 * 139.79128 * 14 13 12 17 17 H 1.07992 * 120.00080 * 266.47406 * 16 14 13 18 18 C 1.37875 * 120.00008 * 86.47719 * 16 14 13 19 19 N 1.31522 * 120.00135 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00183 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47479 * 59.99292 * 20 18 16 22 22 H 1.48497 * 109.47281 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46941 * 299.99656 * 20 18 16 24 24 C 1.47059 * 136.05707 * 89.99508 * 12 9 7 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 6 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 6 2 1 30 30 H 1.09004 * 109.46910 * 90.00114 * 8 7 6 31 31 H 1.09000 * 109.47165 * 210.00116 * 8 7 6 32 32 H 1.08999 * 109.47234 * 330.00381 * 8 7 6 33 33 H 1.08994 * 113.46765 * 267.68672 * 13 12 9 34 34 H 1.08997 * 113.46976 * 38.13955 * 13 12 9 35 35 H 0.96693 * 113.99867 * 273.58094 * 15 14 13 36 36 H 0.97000 * 120.00185 * 180.02562 * 19 18 16 37 37 H 1.08994 * 113.47122 * 321.87323 * 24 12 9 38 38 H 1.09002 * 113.46503 * 92.25514 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3992 -1.2294 2.1294 6 6 2.0401 -0.7213 -1.2492 7 7 1.6526 0.0353 -2.4423 8 6 0.3294 -0.1644 -3.0387 9 16 2.7102 1.1163 -3.1170 10 8 1.9220 2.0473 -3.8459 11 8 3.6070 1.4987 -2.0833 12 7 3.6100 0.2894 -4.2346 13 6 4.8767 -0.4578 -4.2309 14 6 4.3301 -1.2787 -5.4105 15 8 3.5599 -2.4202 -5.0285 16 6 5.3475 -1.5778 -6.4812 17 1 5.4397 -0.9245 -7.3361 18 6 6.1607 -2.6856 -6.3692 19 7 6.0488 -3.4810 -5.3278 20 14 7.4224 -3.0560 -7.6960 21 1 8.3744 -1.9216 -7.8044 22 1 8.1647 -4.2924 -7.3419 23 1 6.7314 -3.2482 -8.9964 24 6 3.4973 -0.0154 -5.6689 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 -0.3800 0.5312 -2.5902 31 1 0.3841 0.0142 -4.1125 32 1 -0.0005 -1.1873 -2.8569 33 1 5.7415 0.1526 -4.4908 34 1 5.0314 -1.0454 -3.3260 35 1 4.0873 -3.2143 -4.8665 36 1 6.6212 -4.2601 -5.2489 37 1 2.4770 -0.2261 -5.9890 38 1 3.9977 0.7122 -6.3079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332015963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:40 Heat of formation + Delta-G solvation = -54.432794 kcal Electronic energy + Delta-G solvation = -23829.048960 eV Core-core repulsion = 20221.376989 eV Total energy + Delta-G solvation = -3607.671971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.65674 -38.18907 -36.92203 -36.06070 -35.53403 -34.00403 -32.72327 -32.18376 -28.17715 -27.88402 -25.12671 -24.92449 -24.66362 -23.13866 -19.74249 -18.42073 -17.86382 -17.78374 -17.11638 -16.66648 -16.23614 -15.30511 -15.02173 -14.79962 -14.34250 -14.28758 -13.78469 -13.42799 -13.31350 -13.15301 -13.01732 -12.93187 -12.69294 -12.27657 -12.16012 -12.06735 -11.81836 -11.75546 -11.73713 -11.54428 -11.36948 -11.34615 -11.07681 -11.02620 -10.84462 -10.51947 -10.27809 -9.40956 -9.12253 -8.79701 -8.59184 -8.10919 -6.40105 -4.49758 0.83335 2.63919 2.70307 3.11007 3.16192 3.22323 3.24835 3.69980 3.93278 4.17747 4.48929 4.58360 4.68137 4.85140 4.89245 5.05446 5.34680 5.40463 5.42272 5.49857 5.61159 5.72657 5.80724 5.91864 5.99510 6.04895 6.08800 6.21069 6.27765 6.51472 6.68429 6.77074 6.99940 7.46210 7.47669 7.65101 7.82660 8.53231 9.21056 9.46451 10.66264 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.004582 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.566283 B = 6108.771174 C = 6747.667283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.019 4.019 3 H 0.119 0.881 4 C 0.218 3.782 5 N -0.435 5.435 6 C 0.138 3.862 7 N -1.002 6.002 8 C 0.095 3.905 9 S 2.804 3.196 10 O -0.983 6.983 11 O -0.981 6.981 12 N -1.047 6.047 13 C 0.105 3.895 14 C 0.241 3.759 15 O -0.572 6.572 16 C -0.535 4.535 17 H 0.071 0.929 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.135 3.865 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.062 0.938 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 4.385 4.416 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.042 4.042 3 H 0.137 0.863 4 C -0.101 4.101 5 N -0.110 5.110 6 C 0.010 3.990 7 N -0.840 5.840 8 C -0.050 4.050 9 S 2.815 3.185 10 O -0.967 6.967 11 O -0.966 6.966 12 N -0.890 5.890 13 C -0.020 4.020 14 C 0.198 3.802 15 O -0.385 6.385 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.199 1.199 24 C 0.010 3.990 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.802 4.874 6.238 12.599 hybrid contribution 1.030 -0.732 -0.859 1.528 sum -8.771 4.142 5.379 11.092 Atomic orbital electron populations 1.21995 0.91677 1.03439 1.03708 1.19445 0.97735 1.00193 0.86875 0.86346 1.28940 0.93207 0.93575 0.94356 1.81210 1.08794 1.09439 1.11596 1.21130 1.01192 0.95179 0.81483 1.57908 1.27663 1.60666 1.37729 1.21573 0.82910 1.02257 0.98275 1.01158 0.72311 0.72635 0.72360 1.93567 1.70769 1.59155 1.73200 1.93574 1.64579 1.81089 1.57312 1.60064 1.35505 1.71533 1.21912 1.23661 0.84154 0.92433 1.01767 1.19726 0.87534 0.83027 0.89960 1.85984 1.39014 1.22789 1.90730 1.21480 1.17873 1.10562 1.07447 0.91040 1.25064 0.96919 0.95324 0.95687 1.69244 1.40448 1.15645 1.28652 0.86394 0.80760 0.77857 0.81522 1.19900 1.21063 1.19881 1.22791 1.00543 0.96789 0.78902 0.91808 0.89738 0.91509 0.89153 0.89027 0.92360 0.91010 0.90736 0.90376 0.92157 0.75015 0.91567 0.91927 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.66 37.16 0.32 -0.81 16 2 C -0.02 -0.19 2.97 -93.40 -0.28 -0.47 16 3 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.22 2.70 14.64 -20.76 -0.30 2.40 16 5 N -0.43 -6.50 18.54 42.15 0.78 -5.72 16 6 C 0.14 1.62 4.84 -4.04 -0.02 1.60 16 7 N -1.00 -13.06 3.15 -121.75 -0.38 -13.44 16 8 C 0.10 0.99 9.11 59.85 0.55 1.54 16 9 S 2.80 47.56 6.60 -107.50 -0.71 46.85 16 10 O -0.98 -18.23 17.21 -57.17 -0.98 -19.22 16 11 O -0.98 -18.40 17.11 -57.17 -0.98 -19.37 16 12 N -1.05 -19.78 4.29 -125.02 -0.54 -20.31 16 13 C 0.11 2.20 8.17 -8.37 -0.07 2.13 16 14 C 0.24 5.39 1.58 -91.12 -0.14 5.24 16 15 O -0.57 -13.30 13.55 -35.23 -0.48 -13.78 16 16 C -0.53 -12.84 8.70 -34.44 -0.30 -13.14 16 17 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 19 N -0.90 -22.13 11.01 55.43 0.61 -21.52 16 20 Si 0.91 18.99 29.54 -169.99 -5.02 13.97 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C 0.14 2.62 8.14 -8.51 -0.07 2.55 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.59 5.09 -51.93 -0.26 0.32 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 1.20 7.61 -51.93 -0.40 0.80 16 29 H 0.09 0.92 7.96 -51.93 -0.41 0.51 16 30 H 0.06 0.48 6.22 -51.93 -0.32 0.16 16 31 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 32 H 0.07 0.64 7.94 -51.93 -0.41 0.22 16 33 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.39 9.54 6.32 45.56 0.29 9.83 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -29.20 336.49 -7.46 -36.66 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.42 Total: 8.11 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.41 Total: 2.70 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.47 Total: -60.99 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -2.44 Total: -52.37 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 16 Polarization: 47.56 SS G_CDS: -0.71 Total: 46.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.20 -7.46 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332015963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.772 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds