Wall clock time and date at job start Tue Mar 31 2020 04:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.47200 * 109.47605 * 174.99783 * 4 2 1 6 6 N 3.43556 * 154.82720 * 248.43040 * 2 1 3 7 7 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 8 8 C 1.46509 * 119.99920 * 60.00125 * 7 2 1 9 9 S 1.65602 * 120.00679 * 239.99966 * 7 2 1 10 10 O 1.42100 * 106.40635 * 203.54125 * 9 7 2 11 11 O 1.42101 * 106.39740 * 336.46506 * 9 7 2 12 12 N 1.65609 * 107.21523 * 89.99672 * 9 7 2 13 13 C 1.47064 * 136.05965 * 269.63329 * 12 9 7 14 14 C 1.53238 * 88.08191 * 207.20566 * 13 12 9 15 15 O 1.42892 * 114.19939 * 87.72865 * 14 13 12 16 16 C 1.50697 * 114.32514 * 220.47211 * 14 13 12 17 17 H 1.07997 * 120.00250 * 93.75959 * 16 14 13 18 18 C 1.37879 * 120.00103 * 273.75658 * 16 14 13 19 19 N 1.31515 * 119.99735 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00120 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47460 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47135 * 120.00447 * 20 18 16 23 23 H 1.48504 * 109.46965 * 240.00003 * 20 18 16 24 24 C 1.47065 * 136.05350 * 90.00528 * 12 9 7 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 29 29 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 30 30 H 1.09003 * 109.46975 * 89.99812 * 8 7 2 31 31 H 1.08995 * 109.47277 * 209.99863 * 8 7 2 32 32 H 1.09003 * 109.46743 * 330.00349 * 8 7 2 33 33 H 1.09001 * 113.46879 * 321.93860 * 13 12 9 34 34 H 1.08998 * 113.46837 * 92.37937 * 13 12 9 35 35 H 0.96702 * 114.00561 * 86.29829 * 15 14 13 36 36 H 0.97003 * 119.99994 * 180.02562 * 19 18 16 37 37 H 1.08999 * 113.46973 * 267.62762 * 24 12 9 38 38 H 1.09007 * 113.46884 * 38.00149 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5071 -0.6173 -1.3112 6 7 4.6393 -0.5372 -1.3590 7 7 2.0183 -0.6905 1.1962 8 6 1.6644 -2.0932 1.4281 9 16 2.9704 0.1142 2.2863 10 8 3.7118 -0.8788 2.9816 11 8 3.5794 1.1830 1.5749 12 7 1.9606 0.8092 3.3998 13 6 1.2661 2.0978 3.5407 14 6 1.3148 1.8996 5.0594 15 8 2.5056 2.3925 5.6765 16 6 0.0566 2.3105 5.7797 17 1 -0.7091 1.5784 5.9896 18 6 -0.1171 3.6211 6.1710 19 7 0.8152 4.5128 5.9151 20 14 -1.6764 4.1303 7.0646 21 1 -2.5606 2.9488 7.2298 22 1 -1.3257 4.6763 8.4004 23 1 -2.3823 5.1708 6.2744 24 6 1.3690 0.4116 4.6862 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2617 -2.1369 30 1 2.4157 -2.7377 0.9718 31 1 1.6238 -2.2851 2.5002 32 1 0.6904 -2.3002 0.9847 33 1 1.8548 2.9481 3.1963 34 1 0.2547 2.0925 3.1345 35 1 2.4683 3.3301 5.9104 36 1 0.6932 5.4348 6.1907 37 1 0.3853 -0.0475 4.5882 38 1 2.0446 -0.1699 5.3135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332060435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:49 Heat of formation + Delta-G solvation = -56.170709 kcal Electronic energy + Delta-G solvation = -23979.277211 eV Core-core repulsion = 20371.529878 eV Total energy + Delta-G solvation = -3607.747332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.65878 -38.27537 -36.83813 -36.03735 -35.42683 -33.97405 -32.16305 -31.97758 -28.42359 -27.86645 -26.54696 -25.10562 -24.70866 -21.59040 -19.70001 -18.69737 -17.87517 -17.63283 -17.42842 -16.66598 -15.99881 -15.27384 -14.98403 -14.83493 -14.26387 -14.03129 -13.96282 -13.69633 -13.35421 -13.16695 -13.03310 -12.63356 -12.55953 -12.46068 -12.13880 -11.91406 -11.76771 -11.69399 -11.68242 -11.66497 -11.52032 -11.30415 -11.10193 -10.98970 -10.80044 -10.48619 -10.23799 -9.40037 -9.15943 -8.79318 -8.57277 -8.07602 -6.38132 -4.48998 0.87076 2.71141 2.76271 3.12938 3.14102 3.23112 3.25788 3.79944 3.94465 4.17783 4.46748 4.54509 4.80870 4.84267 4.88183 5.06202 5.19260 5.27537 5.40058 5.47500 5.51119 5.52451 5.72299 5.91114 6.02979 6.03501 6.10271 6.20027 6.38735 6.49092 6.78125 6.80487 7.00868 7.48822 7.54543 7.66249 7.84663 8.54685 9.22036 9.54532 10.68324 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.004509 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.584980 B = 6208.537815 C = 6527.716709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.107 0.893 4 C -0.033 4.033 5 C 0.198 3.802 6 N -0.426 5.426 7 N -1.015 6.015 8 C 0.093 3.907 9 S 2.793 3.207 10 O -0.979 6.979 11 O -0.974 6.974 12 N -1.038 6.038 13 C 0.102 3.898 14 C 0.243 3.757 15 O -0.573 6.573 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.129 3.871 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.273 0.727 37 H 0.081 0.919 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -9.285 -11.689 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.125 0.875 4 C -0.075 4.075 5 C -0.121 4.121 6 N -0.102 5.102 7 N -0.853 5.853 8 C -0.053 4.053 9 S 2.806 3.194 10 O -0.963 6.963 11 O -0.958 6.958 12 N -0.881 5.881 13 C -0.024 4.024 14 C 0.199 3.801 15 O -0.386 6.386 16 C -0.572 4.572 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.004 3.996 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.500 -9.673 -12.038 15.834 hybrid contribution -1.793 0.771 0.352 1.983 sum -5.293 -8.902 -11.685 15.615 Atomic orbital electron populations 1.22148 0.93205 1.03078 1.03557 1.20853 0.95449 0.96971 0.82831 0.87484 1.19736 0.82393 1.04636 1.00747 1.29100 0.95346 0.93832 0.93774 1.81234 1.12994 1.08016 1.07969 1.58443 1.70236 1.21178 1.35454 1.21401 1.00977 0.80672 1.02214 1.01611 0.73408 0.72524 0.71886 1.93561 1.68481 1.60687 1.73548 1.93575 1.73785 1.55483 1.72997 1.60307 1.64654 1.29135 1.34012 1.23600 0.94499 0.82412 1.01843 1.19549 0.84952 0.88286 0.87355 1.86033 1.37899 1.33637 1.81009 1.21520 1.02652 0.94867 1.38123 0.90904 1.25098 0.97307 0.96150 0.94609 1.69287 1.34021 1.03745 1.46689 0.86278 0.82196 0.78634 0.79344 1.19463 1.20675 1.20721 1.22850 0.96331 0.99942 0.80516 0.91559 0.90953 0.90916 0.86983 0.86204 0.92867 0.90982 0.90661 0.91638 0.90594 0.74941 0.91605 0.90045 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.17 37.16 0.34 -0.80 16 2 C 0.15 1.47 2.60 -67.94 -0.18 1.29 16 3 H 0.11 1.28 6.91 -51.93 -0.36 0.92 16 4 C -0.03 -0.25 5.14 -29.52 -0.15 -0.40 16 5 C 0.20 2.55 15.14 -20.76 -0.31 2.24 16 6 N -0.43 -7.13 18.54 42.16 0.78 -6.35 16 7 N -1.01 -13.18 2.83 -114.61 -0.32 -13.50 16 8 C 0.09 0.92 9.25 59.85 0.55 1.48 16 9 S 2.79 53.26 6.64 -107.50 -0.71 52.54 16 10 O -0.98 -21.29 17.21 -57.17 -0.98 -22.27 16 11 O -0.97 -21.19 16.70 -57.17 -0.95 -22.15 16 12 N -1.04 -20.61 4.29 -125.33 -0.54 -21.15 16 13 C 0.10 2.17 8.14 -8.64 -0.07 2.10 16 14 C 0.24 5.74 1.57 -91.39 -0.14 5.60 16 15 O -0.57 -15.05 13.54 -35.23 -0.48 -15.53 16 16 C -0.53 -12.92 8.69 -34.44 -0.30 -13.22 16 17 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.07 1.73 5.39 -17.82 -0.10 1.64 16 19 N -0.90 -22.72 11.01 55.43 0.61 -22.11 16 20 Si 0.91 18.94 29.54 -169.99 -5.02 13.92 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 24 C 0.13 2.60 8.15 -8.51 -0.07 2.53 16 25 H 0.07 0.36 6.66 -51.93 -0.35 0.01 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.11 0.54 7.51 -51.93 -0.39 0.15 16 29 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 32 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 35 H 0.39 10.48 6.33 45.56 0.29 10.76 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -33.60 337.67 -7.43 -41.03 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.47 Total: 8.04 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.43 Total: 2.45 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.53 Total: -63.11 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -2.42 Total: -59.95 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.71 Total: 52.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.60 -7.43 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332060435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.145 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds