Wall clock time and date at job start Tue Mar 31 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.53007 * 109.47077 * 119.99227 * 2 1 3 5 5 C 1.47199 * 109.47174 * 183.21141 * 4 2 1 6 6 N 3.43551 * 155.02790 * 114.53865 * 2 1 3 7 7 N 1.46492 * 109.47590 * 239.99732 * 2 1 3 8 8 C 1.46496 * 120.00166 * 126.15063 * 7 2 1 9 9 S 1.65607 * 120.00022 * 306.15346 * 7 2 1 10 10 O 1.42100 * 106.40011 * 342.78288 * 9 7 2 11 11 O 1.42098 * 106.40307 * 209.86660 * 9 7 2 12 12 N 1.65599 * 107.21974 * 96.32362 * 9 7 2 13 13 C 1.47581 * 134.49248 * 84.74520 * 12 9 7 14 14 C 1.53942 * 86.11324 * 155.35983 * 13 12 9 15 15 O 1.42896 * 113.74550 * 269.15421 * 14 13 12 16 16 C 1.50706 * 113.73631 * 137.95764 * 14 13 12 17 17 H 1.07991 * 120.00421 * 1.91917 * 16 14 13 18 18 C 1.37882 * 119.99793 * 182.19998 * 16 14 13 19 19 N 1.31514 * 119.99975 * 359.72416 * 18 16 14 20 20 Si 1.86801 * 119.99952 * 179.72347 * 18 16 14 21 21 H 1.48503 * 109.46924 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47113 * 119.99963 * 20 18 16 23 23 H 1.48503 * 109.46624 * 239.99964 * 20 18 16 24 24 C 1.47812 * 134.45581 * 264.62205 * 12 9 7 25 25 H 1.08998 * 109.46541 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47415 * 300.00351 * 1 2 3 27 27 H 1.09001 * 109.46994 * 60.00412 * 1 2 3 28 28 H 1.08996 * 109.47315 * 303.21787 * 4 2 1 29 29 H 1.09000 * 109.46416 * 63.21544 * 4 2 1 30 30 H 1.08996 * 109.47376 * 270.00108 * 8 7 2 31 31 H 1.08998 * 109.47374 * 30.00554 * 8 7 2 32 32 H 1.09009 * 109.47500 * 150.00084 * 8 7 2 33 33 H 1.09007 * 113.76478 * 41.06485 * 13 12 9 34 34 H 1.08999 * 113.87526 * 269.68017 * 13 12 9 35 35 H 0.96698 * 114.00173 * 178.08082 * 15 14 13 36 36 H 0.96997 * 120.00278 * 179.97438 * 19 18 16 37 37 H 1.08995 * 113.77087 * 90.37694 * 24 12 9 38 38 H 1.08999 * 113.83240 * 318.90998 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5100 -0.6542 1.2889 6 7 4.6443 -0.6024 1.3194 7 7 2.0184 -0.6906 -1.1960 8 6 2.9682 -0.0240 -2.0903 9 16 1.4968 -2.2249 -1.5373 10 8 0.9395 -2.7361 -0.3343 11 8 2.5572 -2.8633 -2.2353 12 7 0.2444 -2.0891 -2.6122 13 6 0.1499 -1.9617 -4.0794 14 6 -1.2586 -2.5664 -3.9363 15 8 -1.2860 -3.9914 -4.0384 16 6 -2.2972 -1.8955 -4.7979 17 1 -2.0122 -1.0912 -5.4598 18 6 -3.6125 -2.3048 -4.7369 19 7 -3.9596 -3.2843 -3.9308 20 14 -4.9013 -1.4682 -5.7991 21 1 -4.2584 -0.4041 -6.6114 22 1 -5.5264 -2.4696 -6.6999 23 1 -5.9435 -0.8652 -4.9300 24 6 -1.2279 -2.0493 -2.4866 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6304 -0.2416 2.1384 29 1 1.7244 -1.7640 1.2211 30 1 2.4215 0.5280 -2.8548 31 1 3.5856 0.6662 -1.5153 32 1 3.6045 -0.7703 -2.5661 33 1 0.8485 -2.5990 -4.6216 34 1 0.1516 -0.9309 -4.4338 35 1 -2.1647 -4.3774 -3.9198 36 1 -4.8849 -3.5720 -3.8875 37 1 -1.6318 -1.0437 -2.3702 38 1 -1.6272 -2.7563 -1.7595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332060437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:53 Heat of formation + Delta-G solvation = -55.994676 kcal Electronic energy + Delta-G solvation = -24200.107260 eV Core-core repulsion = 20592.367561 eV Total energy + Delta-G solvation = -3607.739699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.48843 -38.27208 -36.86741 -36.01842 -35.48059 -33.91237 -32.20419 -32.17942 -28.42038 -27.74036 -25.81915 -25.32115 -24.63890 -22.32708 -19.66006 -18.47825 -17.97039 -17.54561 -16.77711 -16.69595 -16.23543 -15.36355 -15.11023 -14.87062 -14.25759 -13.96401 -13.85446 -13.58827 -13.35414 -13.15867 -13.02642 -12.85328 -12.53325 -12.47721 -12.18158 -12.01987 -11.83604 -11.66560 -11.63825 -11.57559 -11.37501 -11.32822 -11.13551 -10.84814 -10.63557 -10.52185 -10.27028 -9.39892 -9.12958 -8.77909 -8.61787 -8.08007 -6.37712 -4.48218 0.87628 2.66960 2.71622 3.09823 3.13100 3.23255 3.25931 3.75562 3.87844 4.18142 4.50109 4.61885 4.76610 4.87637 5.02640 5.07598 5.29352 5.36615 5.48777 5.52444 5.69006 5.72220 5.74404 5.92939 6.02675 6.07324 6.16999 6.27548 6.35143 6.50009 6.74856 6.79557 6.98777 7.48982 7.49747 7.65084 7.84674 8.54977 9.22607 9.46566 10.68655 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.004515 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.392563 B = 6199.641988 C = 6418.613755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.166 3.834 3 H 0.096 0.904 4 C -0.072 4.072 5 C 0.211 3.789 6 N -0.442 5.442 7 N -1.017 6.017 8 C 0.088 3.912 9 S 2.790 3.210 10 O -0.978 6.978 11 O -0.982 6.982 12 N -1.031 6.031 13 C 0.130 3.870 14 C 0.244 3.756 15 O -0.573 6.573 16 C -0.536 4.536 17 H 0.071 0.929 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.109 3.891 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.077 0.923 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 8.656 6.665 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.058 3.942 3 H 0.114 0.886 4 C -0.114 4.114 5 C -0.107 4.107 6 N -0.119 5.119 7 N -0.854 5.854 8 C -0.058 4.058 9 S 2.803 3.197 10 O -0.963 6.963 11 O -0.966 6.966 12 N -0.875 5.875 13 C 0.004 3.996 14 C 0.200 3.800 15 O -0.385 6.385 16 C -0.576 4.576 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.016 4.016 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.449 7.896 7.206 13.029 hybrid contribution -1.800 0.823 -0.411 2.021 sum 5.649 8.719 6.795 12.414 Atomic orbital electron populations 1.22515 0.93052 1.05198 1.03997 1.20680 0.94900 0.96708 0.81901 0.88567 1.20405 0.82071 1.07761 1.01128 1.29196 0.95319 0.93129 0.93031 1.81190 1.12881 1.09094 1.08756 1.58335 1.57552 1.36594 1.32956 1.21525 0.92229 0.98625 0.93405 1.01751 0.72410 0.72807 0.72757 1.93462 1.79270 1.78195 1.45370 1.93559 1.55217 1.72875 1.74929 1.60498 1.19915 1.87949 1.19092 1.23026 0.99144 0.99960 0.77447 1.19882 0.89932 0.80544 0.89647 1.86051 1.37696 1.19935 1.94792 1.21591 0.92295 1.19081 1.24584 0.91077 1.25071 0.98691 0.94609 0.94693 1.69418 1.19237 1.27763 1.37191 0.86323 0.80843 0.79431 0.80121 1.19534 1.20713 1.20756 1.23841 0.74202 1.00700 1.02849 0.89924 0.90158 0.90634 0.85880 0.84180 0.92441 0.91408 0.90330 0.91011 0.89959 0.75363 0.91743 0.90448 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 9.03 37.16 0.34 -1.56 16 2 C 0.17 1.68 2.64 -67.93 -0.18 1.50 16 3 H 0.10 0.74 7.85 -51.93 -0.41 0.33 16 4 C -0.07 -0.71 5.14 -29.51 -0.15 -0.87 16 5 C 0.21 2.65 15.10 -20.76 -0.31 2.34 16 6 N -0.44 -6.67 18.54 42.15 0.78 -5.89 16 7 N -1.02 -13.34 2.77 -114.61 -0.32 -13.66 16 8 C 0.09 1.01 10.64 59.84 0.64 1.65 16 9 S 2.79 49.28 5.87 -107.50 -0.63 48.65 16 10 O -0.98 -17.89 13.04 -57.17 -0.75 -18.63 16 11 O -0.98 -20.54 16.87 -57.17 -0.96 -21.51 16 12 N -1.03 -19.35 4.18 -118.55 -0.50 -19.85 16 13 C 0.13 2.52 8.39 -2.97 -0.02 2.50 16 14 C 0.24 5.56 1.40 -90.85 -0.13 5.43 16 15 O -0.57 -14.39 13.49 -35.23 -0.48 -14.87 16 16 C -0.54 -12.78 8.61 -34.44 -0.30 -13.07 16 17 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.07 1.73 5.40 -17.82 -0.10 1.63 16 19 N -0.90 -22.06 11.21 55.43 0.62 -21.44 16 20 Si 0.91 18.75 29.54 -169.99 -5.02 13.73 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 C 0.11 2.20 8.02 -2.84 -0.02 2.18 16 25 H 0.08 1.04 5.63 -51.93 -0.29 0.75 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.14 1.67 5.43 -51.93 -0.28 1.38 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.66 7.98 -51.93 -0.41 0.25 16 32 H 0.08 1.02 7.09 -51.92 -0.37 0.65 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 35 H 0.39 9.95 6.61 45.56 0.30 10.25 16 36 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 37 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -30.07 332.91 -6.86 -36.93 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.39 Total: 9.79 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.24 Total: 1.73 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.59 Total: -60.84 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -2.19 Total: -55.01 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.63 Total: 48.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.07 -6.86 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332060437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.064 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds