Wall clock time and date at job start Tue Mar 31 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46961 * 2 1 4 4 C 1.46496 * 120.00157 * 274.99576 * 3 2 1 5 5 C 1.50698 * 109.47292 * 279.70447 * 4 3 2 6 6 H 1.08001 * 120.00148 * 4.88412 * 5 4 3 7 7 C 1.37883 * 120.00331 * 184.88841 * 5 4 3 8 8 N 1.31516 * 120.00326 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99475 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46974 * 90.00298 * 9 7 5 11 11 H 1.48503 * 109.46958 * 210.00198 * 9 7 5 12 12 H 1.48499 * 109.47567 * 330.00107 * 9 7 5 13 13 S 1.65604 * 119.99790 * 95.00373 * 3 2 1 14 14 O 1.42100 * 106.40053 * 330.19612 * 13 3 2 15 15 O 1.42107 * 106.39699 * 197.27796 * 13 3 2 16 16 N 1.65601 * 107.21937 * 83.73848 * 13 3 2 17 17 C 1.46497 * 119.99850 * 64.20605 * 16 13 3 18 18 C 1.50705 * 109.46991 * 164.94645 * 17 16 13 19 19 N 1.34478 * 126.16656 * 90.02404 * 18 17 16 20 20 C 1.30255 * 108.69952 * 180.02562 * 19 18 17 21 21 O 1.33973 * 108.76155 * 359.97438 * 20 19 18 22 22 C 1.34330 * 126.16499 * 270.02581 * 18 17 16 23 23 C 1.50700 * 126.44226 * 0.02562 * 22 18 17 24 24 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46910 * 300.00324 * 1 2 3 26 26 H 1.09001 * 109.46868 * 60.00203 * 1 2 3 27 27 H 1.09000 * 109.46910 * 239.99675 * 2 1 3 28 28 H 1.08996 * 109.46574 * 120.00176 * 2 1 3 29 29 H 1.09001 * 109.47006 * 39.70184 * 4 3 2 30 30 H 1.08999 * 109.47161 * 159.70058 * 4 3 2 31 31 H 0.96994 * 119.99508 * 179.97438 * 8 7 5 32 32 H 0.96997 * 119.99727 * 244.20302 * 16 13 3 33 33 H 1.08998 * 109.47784 * 44.94945 * 17 16 13 34 34 H 1.08996 * 109.47393 * 284.94147 * 17 16 13 35 35 H 1.07997 * 125.61791 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47527 * 89.99961 * 23 22 18 37 37 H 1.09005 * 109.47139 * 210.00493 * 23 22 18 38 38 H 1.09003 * 109.47620 * 329.99901 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4427 1.7010 -1.9385 6 1 4.0509 0.9165 -1.5130 7 6 3.8416 2.3297 -3.0991 8 7 4.9628 1.9743 -3.6876 9 14 2.7894 3.6862 -3.8354 10 1 3.2082 4.9964 -3.2758 11 1 2.9610 3.7002 -5.3104 12 1 1.3625 3.4403 -3.5055 13 16 2.4122 2.1201 1.4287 14 8 1.5785 1.5411 2.4231 15 8 2.4496 3.5154 1.1618 16 7 3.9629 1.6734 1.8005 17 6 5.0696 2.0741 0.9282 18 6 6.3766 1.8772 1.6524 19 7 7.1268 0.7612 1.6467 20 6 8.1817 0.9633 2.3835 21 8 8.1315 2.2085 2.8755 22 6 7.0020 2.7850 2.4200 23 6 6.5289 4.1847 2.7168 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3158 1.8729 -1.9140 30 1 2.1760 3.1804 -1.0662 31 1 5.2430 2.4163 -4.5042 32 1 4.1384 1.1465 2.5957 33 1 4.9582 3.1243 0.6589 34 1 5.0595 1.4642 0.0249 35 1 8.9673 0.2455 2.5676 36 1 5.9069 4.1760 3.6117 37 1 7.3903 4.8326 2.8793 38 1 5.9474 4.5582 1.8738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336951608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:08 Heat of formation + Delta-G solvation = -53.183082 kcal Electronic energy + Delta-G solvation = -23932.444494 eV Core-core repulsion = 20324.826715 eV Total energy + Delta-G solvation = -3607.617779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.24870 -36.77283 -36.20511 -35.81911 -35.30376 -33.89165 -32.64372 -32.14535 -30.21269 -27.59547 -27.13194 -25.26646 -22.92694 -22.12672 -21.54630 -20.74639 -18.87285 -17.58538 -17.15490 -16.85835 -16.67476 -16.50375 -15.72029 -15.02420 -14.91801 -14.28219 -14.09189 -13.75235 -13.39557 -13.10672 -13.01516 -12.66624 -12.62513 -12.40016 -12.23566 -12.06599 -11.92458 -11.56644 -11.52289 -11.41966 -11.14178 -11.02222 -10.96009 -10.53047 -10.37663 -10.36077 -10.15894 -9.63354 -9.00470 -8.65744 -8.62878 -8.11734 -6.16124 -4.17229 1.15693 1.55700 2.74480 2.82060 3.26181 3.33407 3.37145 3.53841 4.10370 4.24101 4.34846 4.82428 4.92532 5.04373 5.15875 5.23183 5.36328 5.42809 5.56424 5.67402 5.73569 5.81181 5.98574 6.03807 6.07970 6.23397 6.29427 6.37318 6.55352 6.55825 6.64095 6.87458 7.10930 7.24492 7.46733 7.56726 7.83808 8.40509 8.87181 9.44252 10.95348 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.006649 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.460433 B = 4209.833106 C = 5410.879817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.986 5.986 4 C 0.213 3.787 5 C -0.544 4.544 6 H 0.085 0.915 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.867 3.133 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.788 3.212 14 O -0.996 6.996 15 O -0.982 6.982 16 N -1.125 6.125 17 C 0.200 3.800 18 C -0.014 4.014 19 N -0.466 5.466 20 C 0.157 3.843 21 O -0.209 6.209 22 C -0.031 4.031 23 C -0.073 4.073 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 -0.448 11.537 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.826 5.826 4 C 0.089 3.911 5 C -0.583 4.583 6 H 0.102 0.898 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.796 3.204 14 O -0.980 6.980 15 O -0.965 6.965 16 N -0.884 5.884 17 C 0.075 3.925 18 C -0.134 4.134 19 N -0.194 5.194 20 C -0.070 4.070 21 O -0.096 6.096 22 C -0.086 4.086 23 C -0.129 4.129 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.264 0.736 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.618 -0.244 11.392 11.509 hybrid contribution 0.343 0.563 -0.162 0.679 sum 1.961 0.319 11.230 11.405 Atomic orbital electron populations 1.22222 0.96913 1.01531 1.02332 1.20996 0.93510 0.82432 1.02613 1.57501 1.78753 1.23184 1.23206 1.19593 0.98249 0.92248 0.81013 1.21457 1.05737 1.21833 1.09235 0.89753 1.24851 0.94688 0.96549 0.96483 1.69900 1.21703 1.41902 1.19201 0.86982 0.81753 0.83225 0.78651 1.19705 1.21123 1.18854 1.01665 0.72503 0.73667 0.72601 1.93563 1.65423 1.79642 1.59344 1.93559 1.86678 1.31002 1.85278 1.55975 1.24681 1.71230 1.36496 1.19639 0.78548 1.02319 0.92020 1.21539 0.99691 0.89868 1.02336 1.70377 1.03986 1.27067 1.18008 1.27981 0.99564 0.84111 0.95302 1.84408 1.38763 1.27180 1.59205 1.23335 0.86648 0.98308 1.00272 1.20369 1.01575 0.86780 1.04193 0.92225 0.92441 0.92277 0.89741 0.91807 0.94733 0.93681 0.92492 0.75997 0.88990 0.87117 0.73616 0.89705 0.90363 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.13 2.21 6.03 -4.04 -0.02 2.19 16 3 N -0.99 -19.28 2.84 -115.67 -0.33 -19.61 16 4 C 0.21 4.78 4.52 -5.20 -0.02 4.76 16 5 C -0.54 -13.84 9.05 -34.44 -0.31 -14.15 16 6 H 0.08 2.28 6.65 -52.49 -0.35 1.94 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.39 13.96 55.43 0.77 -24.62 16 9 Si 0.87 20.39 27.37 -169.99 -4.65 15.73 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.26 -5.95 6.68 56.52 0.38 -5.57 16 13 S 2.79 52.65 6.06 -107.50 -0.65 52.00 16 14 O -1.00 -19.50 17.17 -57.17 -0.98 -20.48 16 15 O -0.98 -20.95 16.04 -57.17 -0.92 -21.86 16 16 N -1.13 -18.71 6.05 -11.66 -0.07 -18.78 16 17 C 0.20 3.62 6.48 -5.19 -0.03 3.59 16 18 C -0.01 -0.22 6.50 -82.81 -0.54 -0.76 16 19 N -0.47 -7.64 11.29 -11.17 -0.13 -7.76 16 20 C 0.16 1.94 13.23 52.09 0.69 2.63 16 21 O -0.21 -2.76 10.78 5.37 0.06 -2.70 16 22 C -0.03 -0.45 7.39 -35.69 -0.26 -0.71 16 23 C -0.07 -0.81 10.22 36.01 0.37 -0.45 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 26 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 27 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 28 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 29 H 0.03 0.77 7.50 -51.93 -0.39 0.38 16 30 H 0.05 1.05 5.94 -51.93 -0.31 0.75 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.41 5.98 8.65 -34.47 -0.30 5.68 16 33 H 0.09 1.68 6.79 -51.93 -0.35 1.32 16 34 H 0.11 2.33 5.83 -51.93 -0.30 2.03 16 35 H 0.25 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.16 7.17 -51.93 -0.37 0.79 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -32.79 332.86 -6.62 -39.41 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.88 Total: 6.77 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.14 Total: -3.11 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: 0.25 Total: -70.77 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.84 Total: -45.05 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.65 Total: 15.73 kcal Atomic # 16 Polarization: 52.65 SS G_CDS: -0.65 Total: 52.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.79 -6.62 -39.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336951608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.774 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds