Wall clock time and date at job start Tue Mar 31 2020 04:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46771 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47352 * 119.99395 * 9 7 5 12 12 H 1.48500 * 109.46935 * 239.99996 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 N 1.65602 * 107.21619 * 269.72326 * 13 3 2 17 17 C 1.46506 * 120.00056 * 64.99965 * 16 13 3 18 18 H 1.08999 * 109.46920 * 335.00221 * 17 16 13 19 19 C 1.53000 * 109.46793 * 94.99734 * 17 16 13 20 20 C 1.50693 * 109.46897 * 214.99754 * 17 16 13 21 21 C 1.41387 * 126.79938 * 154.71136 * 20 17 16 22 22 C 1.35452 * 103.98715 * 179.89145 * 21 20 17 23 23 O 1.34041 * 106.44366 * 0.36872 * 22 21 20 24 24 N 1.20924 * 111.57032 * 359.74640 * 23 22 21 25 25 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 26 26 H 1.08991 * 109.47557 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 28 28 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 29 29 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 30 30 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 31 31 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 32 32 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99945 * 245.00283 * 16 13 3 34 34 H 1.08997 * 109.47342 * 300.00029 * 19 17 16 35 35 H 1.08999 * 109.46989 * 60.00530 * 19 17 16 36 36 H 1.09000 * 109.46943 * 179.97438 * 19 17 16 37 37 H 1.08002 * 128.00515 * 0.02562 * 21 20 17 38 38 H 1.07999 * 126.77588 * 180.14076 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.2459 1.0175 2.9760 11 1 6.2968 3.2147 4.0013 12 1 5.3028 1.3464 5.1854 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 7 4.0085 1.8227 -1.7182 17 6 4.4649 0.4522 -1.9631 18 1 3.7714 -0.2498 -1.5002 19 6 4.5210 0.1950 -3.4703 20 6 5.8379 0.2666 -1.3704 21 6 6.4188 -0.9497 -0.9435 22 6 7.6459 -0.5879 -0.4982 23 8 7.7322 0.7398 -0.6606 24 7 6.7220 1.1951 -1.1447 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0923 3.1802 1.0756 31 1 1.3617 1.8097 1.9453 32 1 3.2794 3.5880 4.5379 33 1 4.6452 2.5544 -1.7254 34 1 3.5279 0.3293 -3.8989 35 1 5.2145 0.8970 -3.9331 36 1 4.8609 -0.8245 -3.6525 37 1 5.9854 -1.9386 -0.9689 38 1 8.4035 -1.2400 -0.0893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:34 Heat of formation + Delta-G solvation = -17.086239 kcal Electronic energy + Delta-G solvation = -24381.856116 eV Core-core repulsion = 20775.803613 eV Total energy + Delta-G solvation = -3606.052503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.80631 -37.07880 -36.43151 -36.03535 -35.22742 -33.06762 -32.70538 -31.37641 -29.96846 -29.49512 -26.62575 -24.27863 -23.20490 -22.93742 -21.72297 -20.71224 -18.99338 -17.95594 -17.36882 -16.97664 -16.85440 -16.27819 -16.16532 -15.24825 -14.50542 -14.32846 -13.87347 -13.75109 -13.54060 -13.24013 -13.19714 -12.90684 -12.41111 -12.10548 -11.96987 -11.71555 -11.66570 -11.47777 -11.37214 -11.21286 -11.13630 -11.06015 -10.94324 -10.50916 -10.41207 -10.09680 -10.04522 -9.76318 -9.55046 -9.27757 -8.48423 -8.08204 -6.09889 -4.15527 1.26762 1.63551 2.33747 3.24293 3.32454 3.34187 3.36060 3.44975 4.02333 4.26931 4.37850 4.61937 4.91001 5.02382 5.16318 5.24752 5.26533 5.35928 5.38618 5.51277 5.63202 5.73980 5.78801 5.80519 6.01696 6.06765 6.19563 6.22817 6.32735 6.63426 6.65946 7.21020 7.38898 7.47339 7.65819 7.87235 8.16320 8.41055 8.88945 9.50422 10.98309 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.009569 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.932498 B = 2925.306618 C = 4830.007885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.991 5.991 4 C 0.246 3.754 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 S 2.786 3.214 14 O -0.996 6.996 15 O -0.977 6.977 16 N -1.118 6.118 17 C 0.241 3.759 18 H 0.100 0.900 19 C -0.166 4.166 20 C 0.016 3.984 21 C -0.226 4.226 22 C -0.062 4.062 23 O 0.101 5.899 24 N -0.347 5.347 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.263 0.737 33 H 0.419 0.581 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.172 0.828 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -11.239 -9.796 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.833 5.833 4 C 0.124 3.876 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 S 2.794 3.206 14 O -0.980 6.980 15 O -0.961 6.961 16 N -0.876 5.876 17 C 0.132 3.868 18 H 0.117 0.883 19 C -0.225 4.225 20 C -0.144 4.144 21 C -0.248 4.248 22 C -0.144 4.144 23 O 0.033 5.967 24 N -0.049 5.049 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.189 0.811 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.361 -9.413 -10.367 14.666 hybrid contribution 1.373 -1.071 1.132 2.077 sum 5.734 -10.485 -9.235 15.103 Atomic orbital electron populations 1.22202 0.96747 1.01434 1.02522 1.21043 0.93938 0.83004 1.01901 1.57719 1.78547 1.22818 1.24231 1.19198 0.97307 0.92247 0.78837 1.21537 1.02065 1.27845 1.05826 0.92154 1.24934 0.97108 0.94882 0.96973 1.69941 1.35883 1.29952 1.17072 0.86523 0.84108 0.78298 0.78972 1.19886 1.20863 1.21027 1.01762 0.72665 0.73202 0.73011 1.93543 1.70678 1.76348 1.57415 1.93597 1.85551 1.31046 1.85883 1.56083 1.29669 1.13476 1.88339 1.18876 0.88647 0.84224 0.95083 0.88265 1.22324 1.03969 1.02073 0.94155 1.23655 0.98444 0.89795 1.02553 1.22637 0.95438 1.00370 1.06364 1.25956 1.00190 0.85213 1.03010 1.84851 1.31845 1.21028 1.58936 1.73746 0.94774 1.22911 1.13458 0.92540 0.92313 0.92007 0.92094 0.90153 0.93190 0.94298 0.92702 0.74689 0.90051 0.91931 0.91389 0.81081 0.76967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.14 5.77 -4.04 -0.02 2.12 16 3 N -0.99 -20.29 2.83 -115.66 -0.33 -20.62 16 4 C 0.25 6.16 5.44 -5.19 -0.03 6.13 16 5 C -0.53 -14.19 9.38 -34.44 -0.32 -14.52 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 S 2.79 55.80 6.01 -107.50 -0.65 55.16 16 14 O -1.00 -19.56 16.36 -57.17 -0.94 -20.49 16 15 O -0.98 -23.35 16.69 -57.17 -0.95 -24.31 16 16 N -1.12 -19.59 5.51 -5.88 -0.03 -19.62 16 17 C 0.24 3.54 3.31 -69.08 -0.23 3.31 16 18 H 0.10 1.36 6.25 -51.93 -0.32 1.03 16 19 C -0.17 -2.01 9.50 37.16 0.35 -1.65 16 20 C 0.02 0.25 6.27 -82.10 -0.52 -0.27 16 21 C -0.23 -2.68 11.12 -39.38 -0.44 -3.11 16 22 C -0.06 -0.69 12.30 29.74 0.37 -0.32 16 23 O 0.10 1.50 11.20 17.17 0.19 1.69 16 24 N -0.35 -5.82 11.49 33.42 0.38 -5.44 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.87 6.22 -51.93 -0.32 0.55 16 29 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 30 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 31 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.42 7.41 8.38 -34.47 -0.29 7.12 16 34 H 0.08 1.03 7.64 -51.93 -0.40 0.64 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -34.03 337.57 -7.11 -41.14 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.04 Total: 5.07 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.55 Total: -8.88 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: 0.76 Total: -70.81 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.70 Total: -43.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 55.80 SS G_CDS: -0.65 Total: 55.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.03 -7.11 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.055 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds