Wall clock time and date at job start Tue Mar 31 2020 04:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47586 * 89.99853 * 9 7 5 11 11 H 1.48503 * 109.47097 * 210.00309 * 9 7 5 12 12 H 1.48507 * 109.47346 * 329.99730 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.30251 * 125.62341 * 89.68852 * 18 17 16 20 20 C 1.34474 * 108.70522 * 179.83963 * 19 18 17 21 21 C 1.34337 * 107.66465 * 0.42830 * 20 19 18 22 22 C 1.50699 * 126.44011 * 179.77022 * 21 20 19 23 23 O 1.33971 * 125.61542 * 269.99981 * 18 17 16 24 24 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 26 26 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 28 28 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 29 29 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 30 30 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 31 31 H 0.96999 * 119.99728 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 33 33 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 34 34 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 35 35 H 1.07997 * 126.16799 * 180.16203 * 20 19 18 36 36 H 1.09004 * 109.46617 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47288 * 299.99092 * 22 21 20 38 38 H 1.08995 * 109.47540 * 59.99497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 3.0285 3.1868 -3.6911 9 14 5.5093 1.9641 -3.8513 10 1 5.3732 0.7814 -4.7390 11 1 5.9789 3.1277 -4.6454 12 1 6.4930 1.6674 -2.7790 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.3869 2.2654 1.4754 19 7 7.2055 1.2558 1.3912 20 6 8.3095 1.5349 2.1064 21 6 8.1467 2.7531 2.6488 22 6 9.1275 3.4768 3.5349 23 8 6.9417 3.2064 2.2510 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3618 1.8097 -1.9453 30 1 2.0923 3.1802 -1.0757 31 1 3.2803 3.5893 -4.5369 32 1 4.2771 1.2773 2.4782 33 1 5.0449 1.7849 -0.1128 34 1 4.8084 3.4005 0.5956 35 1 9.1700 0.8935 2.2268 36 1 8.7154 4.4455 3.8178 37 1 9.3129 2.8848 4.4312 38 1 10.0637 3.6238 2.9965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337075268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:16 Heat of formation + Delta-G solvation = -81.058407 kcal Electronic energy + Delta-G solvation = -23693.053453 eV Core-core repulsion = 20084.226909 eV Total energy + Delta-G solvation = -3608.826544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.41320 -38.39121 -37.71273 -36.94300 -36.72859 -35.74120 -34.67288 -33.25372 -31.51392 -29.29146 -28.46293 -26.08226 -24.92640 -23.40567 -23.24821 -22.19574 -20.53189 -19.04775 -18.68144 -18.50231 -18.00776 -17.65584 -17.14423 -16.64508 -16.19124 -15.71300 -15.43669 -15.10839 -14.77720 -14.64980 -14.22243 -14.17138 -13.83833 -13.76312 -13.61808 -13.32386 -13.28337 -13.19846 -13.11580 -13.05292 -12.72845 -12.67754 -12.44649 -12.23882 -12.08840 -11.76624 -11.61350 -11.53475 -10.66799 -10.54870 -9.84926 -9.68640 -8.15469 -6.28223 -0.43391 0.34237 1.43317 1.46731 1.52601 1.55433 1.59549 2.02844 2.43124 2.55401 2.93879 3.17294 3.43366 3.77400 3.95289 4.03122 4.06455 4.28393 4.44788 4.49310 4.52289 4.64169 4.70017 4.71381 4.75800 5.02021 5.03054 5.14826 5.18829 5.28216 5.32546 5.45062 5.56614 5.78483 5.82295 6.04053 6.12521 6.65513 6.84133 7.41769 8.92429 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.006700 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.472358 B = 4178.169126 C = 5916.355825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.993 5.993 4 C 0.256 3.744 5 C -0.544 4.544 6 H 0.079 0.921 7 C 0.022 3.978 8 N -0.922 5.922 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.263 1.263 13 S 2.804 3.196 14 O -0.996 6.996 15 O -1.009 7.009 16 N -1.113 6.113 17 C 0.217 3.783 18 C 0.164 3.836 19 N -0.484 5.484 20 C -0.062 4.062 21 C -0.043 4.043 22 C -0.066 4.066 23 O -0.211 6.211 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.024 0.976 31 H 0.265 0.735 32 H 0.422 0.578 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.216 0.784 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -4.152 12.343 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.834 5.834 4 C 0.133 3.867 5 C -0.583 4.583 6 H 0.097 0.903 7 C -0.178 4.178 8 N -0.561 5.561 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.187 1.187 13 S 2.812 3.188 14 O -0.981 6.981 15 O -0.993 6.993 16 N -0.875 5.875 17 C 0.090 3.910 18 C -0.043 4.043 19 N -0.215 5.215 20 C -0.201 4.201 21 C -0.096 4.096 22 C -0.122 4.122 23 O -0.097 6.097 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.257 0.743 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.647 -3.898 12.241 15.485 hybrid contribution 1.052 0.227 -0.460 1.170 sum 9.699 -3.671 11.781 15.695 Atomic orbital electron populations 1.22192 0.95766 1.03260 1.01456 1.21287 0.94723 0.81081 1.03459 1.57624 1.78869 1.24257 1.22700 1.18821 0.96683 0.91096 0.80129 1.21893 1.02668 1.27662 1.06088 0.90292 1.25636 1.00038 0.94668 0.97494 1.70042 1.37762 1.30820 1.17510 0.85767 0.80612 0.77688 0.79008 1.19965 1.21369 1.18684 1.01086 0.72516 0.72819 0.72363 1.93549 1.70395 1.76109 1.58012 1.93541 1.86306 1.33307 1.86150 1.55765 1.24152 1.68496 1.39087 1.19765 0.77550 1.02058 0.91638 1.26023 0.98208 0.83943 0.96171 1.70437 1.03380 1.26770 1.20892 1.23683 0.99075 0.97246 1.00083 1.24553 0.85894 0.96838 1.02336 1.20565 0.94121 1.00348 0.97214 1.84449 1.29123 1.44257 1.51875 0.93385 0.93164 0.89129 0.89838 0.89677 0.95596 0.95832 0.92548 0.74311 0.85963 0.88676 0.76741 0.90064 0.86792 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 10.24 71.98 0.74 -4.27 16 2 C 0.12 3.93 6.06 86.38 0.52 4.45 16 3 N -0.99 -39.49 2.82 -519.86 -1.47 -40.96 16 4 C 0.26 12.36 5.43 85.63 0.47 12.83 16 5 C -0.54 -26.95 8.06 25.60 0.21 -26.74 16 6 H 0.08 3.69 5.82 -2.91 -0.02 3.67 16 7 C 0.02 1.15 5.46 84.66 0.46 1.62 16 8 N -0.92 -51.78 13.29 21.45 0.28 -51.50 16 9 Si 0.94 41.40 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 13 S 2.80 109.04 6.10 -56.49 -0.34 108.70 16 14 O -1.00 -38.91 17.11 -128.00 -2.19 -41.10 16 15 O -1.01 -46.65 16.15 -128.00 -2.07 -48.72 16 16 N -1.11 -37.41 6.05 -190.79 -1.15 -38.56 16 17 C 0.22 7.87 6.52 85.63 0.56 8.43 16 18 C 0.16 5.55 7.74 88.34 0.68 6.23 16 19 N -0.48 -15.90 11.29 -303.83 -3.43 -19.33 16 20 C -0.06 -1.52 11.80 83.40 0.98 -0.54 16 21 C -0.04 -0.99 7.39 24.79 0.18 -0.80 16 22 C -0.07 -0.76 10.43 71.24 0.74 -0.02 16 23 O -0.21 -6.53 10.78 -3.74 -0.04 -6.57 16 24 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 28 H 0.08 2.43 7.61 -2.39 -0.02 2.41 16 29 H 0.03 1.32 8.11 -2.39 -0.02 1.30 16 30 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.42 12.09 8.64 -96.74 -0.84 11.26 16 33 H 0.12 4.80 4.86 -2.39 -0.01 4.79 16 34 H 0.10 3.63 7.74 -2.39 -0.02 3.62 16 35 H 0.22 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -68.80 336.61 -2.58 -71.38 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.25 Total: 22.03 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.55 Total: 1.19 kcal Atomic # 7 Polarization: -144.58 SS G_CDS: -5.77 Total: -150.35 kcal Atomic # 8 Polarization: -92.08 SS G_CDS: -4.30 Total: -96.38 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 109.04 SS G_CDS: -0.34 Total: 108.70 kcal Total: -68.80 -2.58 -71.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337075268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.674 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds