Wall clock time and date at job start Tue Mar 31 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47198 * 2 1 4 4 C 1.46496 * 120.00282 * 275.00011 * 3 2 1 5 5 C 1.50700 * 109.47017 * 275.00249 * 4 3 2 6 6 H 1.07998 * 120.00166 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00221 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00364 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46930 * 89.99768 * 9 7 5 11 11 H 1.48499 * 109.47311 * 209.99897 * 9 7 5 12 12 H 1.48497 * 109.46919 * 329.99997 * 9 7 5 13 13 S 1.65603 * 119.99563 * 95.00007 * 3 2 1 14 14 O 1.42105 * 106.39689 * 156.45969 * 13 3 2 15 15 O 1.42098 * 106.40287 * 23.54245 * 13 3 2 16 16 N 1.65593 * 107.21850 * 269.99795 * 13 3 2 17 17 C 1.46504 * 120.00041 * 270.00405 * 16 13 3 18 18 C 1.46496 * 119.99961 * 90.00189 * 16 13 3 19 19 C 1.50702 * 109.47286 * 94.99985 * 18 16 13 20 20 C 1.41379 * 126.80093 * 94.70665 * 19 18 16 21 21 C 1.35446 * 103.98652 * 180.26598 * 20 19 18 22 22 O 1.34044 * 106.44743 * 0.02562 * 21 20 19 23 23 N 1.20918 * 111.56370 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47029 * 300.00217 * 1 2 3 26 26 H 1.09001 * 109.46674 * 59.99819 * 1 2 3 27 27 H 1.09006 * 109.46978 * 239.99715 * 2 1 3 28 28 H 1.08998 * 109.46858 * 120.00680 * 2 1 3 29 29 H 1.09000 * 109.47187 * 35.00044 * 4 3 2 30 30 H 1.08994 * 109.47064 * 154.99915 * 4 3 2 31 31 H 0.96995 * 120.00073 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46947 * 269.99808 * 17 16 13 33 33 H 1.08991 * 109.47232 * 29.99919 * 17 16 13 34 34 H 1.08998 * 109.47090 * 150.00153 * 17 16 13 35 35 H 1.08995 * 109.47451 * 334.99949 * 18 16 13 36 36 H 1.09006 * 109.47128 * 215.00056 * 18 16 13 37 37 H 1.08001 * 128.00721 * 0.25149 * 20 19 18 38 38 H 1.08004 * 126.77907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4949 1.7888 -1.8823 6 1 4.1724 1.1116 -1.3835 7 6 3.8531 2.3614 -3.0843 8 7 3.0282 3.1864 -3.6914 9 14 5.5100 1.9654 -3.8505 10 1 5.3749 0.7825 -4.7381 11 1 5.9790 3.1292 -4.6447 12 1 6.4934 1.6695 -2.7778 13 16 2.4122 2.1201 1.4288 14 8 3.3285 3.1569 1.1050 15 8 2.7096 1.0798 2.3499 16 7 1.0433 2.8641 1.9895 17 6 0.7518 4.2476 1.6056 18 6 0.1235 2.1389 2.8694 19 6 0.4499 2.4539 4.3066 20 6 -0.1509 3.4474 5.1133 21 6 0.4874 3.3337 6.3025 22 8 1.3806 2.3443 6.1607 23 7 1.3450 1.8693 5.0493 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3618 1.8098 -1.9452 30 1 2.0923 3.1802 -1.0755 31 1 3.2800 3.5890 -4.5372 32 1 1.1987 4.9277 2.3308 33 1 1.1673 4.4457 0.6177 34 1 -0.3274 4.3987 1.5829 35 1 0.2275 1.0672 2.6998 36 1 -0.9009 2.4431 2.6543 37 1 -0.9368 4.1375 4.8437 38 1 0.3120 3.9242 7.1896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337088809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:21 Heat of formation + Delta-G solvation = -3.779862 kcal Electronic energy + Delta-G solvation = -24030.467023 eV Core-core repulsion = 20424.991528 eV Total energy + Delta-G solvation = -3605.475495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.96762 -36.84086 -36.53756 -36.02567 -35.09514 -33.62627 -32.66542 -31.69948 -30.01618 -28.20466 -26.60721 -24.96381 -23.20507 -23.13011 -21.68046 -21.22907 -18.55106 -17.83707 -17.60428 -17.21342 -16.74779 -16.27258 -15.95068 -15.21107 -14.97398 -14.33307 -14.06154 -13.68603 -13.61489 -13.35134 -13.01490 -12.75186 -12.64030 -12.20927 -12.08365 -11.86481 -11.66796 -11.39484 -11.33957 -11.26975 -11.02434 -10.99246 -10.87206 -10.46744 -10.42042 -10.23742 -9.98340 -9.75604 -9.70834 -9.09046 -8.43544 -8.06520 -6.06265 -4.09772 1.14173 1.49215 2.17655 3.22714 3.32174 3.38483 3.44733 3.50263 4.06872 4.14605 4.43639 4.46834 4.89836 4.93891 5.06848 5.27832 5.28756 5.31390 5.36818 5.47786 5.59417 5.65431 5.69996 5.73991 5.87746 5.93787 5.99932 6.09653 6.28239 6.55324 6.58340 6.72558 7.23313 7.41640 7.63195 7.91888 8.21322 8.28169 8.92705 9.55453 11.02350 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.026249 B = 0.004471 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.463707 B = 6261.624316 C = 6416.688109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.990 5.990 4 C 0.258 3.742 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.772 3.228 14 O -0.961 6.961 15 O -0.980 6.980 16 N -1.009 6.009 17 C 0.096 3.904 18 C 0.205 3.795 19 C -0.011 4.011 20 C -0.223 4.223 21 C -0.072 4.072 22 O 0.103 5.897 23 N -0.332 5.332 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.171 0.829 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 0.581 15.198 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.832 5.832 4 C 0.136 3.864 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 S 2.780 3.220 14 O -0.944 6.944 15 O -0.964 6.964 16 N -0.847 5.847 17 C -0.049 4.049 18 C 0.078 3.922 19 C -0.172 4.172 20 C -0.245 4.245 21 C -0.153 4.153 22 O 0.033 5.967 23 N -0.032 5.032 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.188 0.812 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.283 -0.280 15.204 18.357 hybrid contribution -0.229 0.723 -0.737 1.058 sum -10.513 0.443 14.467 17.889 Atomic orbital electron populations 1.22296 0.97314 1.01481 1.01970 1.21163 0.93024 0.83300 1.03628 1.57819 1.80874 1.21309 1.23174 1.19028 0.97388 0.90959 0.79007 1.21502 1.02085 1.27623 1.05519 0.92206 1.24919 0.97377 0.94794 0.96865 1.69915 1.36160 1.30302 1.17201 0.86522 0.84064 0.77845 0.79212 1.20594 1.21042 1.19695 1.02419 0.73282 0.73386 0.72866 1.93623 1.58839 1.57834 1.84141 1.93571 1.82771 1.57236 1.62834 1.58345 1.43325 1.22812 1.60229 1.21462 1.01584 0.80909 1.00994 1.19411 0.94322 0.97494 0.80979 1.24226 0.96326 0.96869 0.99797 1.22725 1.05430 1.02891 0.93436 1.26023 0.93140 0.94709 1.01435 1.84911 1.47109 1.38495 1.26187 1.74098 1.18486 1.19076 0.91584 0.92136 0.93523 0.91837 0.89651 0.90560 0.94666 0.94702 0.92718 0.93091 0.90181 0.91311 0.88431 0.88287 0.81178 0.76930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.00 16 3 N -0.99 -20.77 2.82 -115.66 -0.33 -21.10 16 4 C 0.26 6.43 5.10 -5.20 -0.03 6.40 16 5 C -0.53 -14.93 9.38 -34.44 -0.32 -15.25 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 S 2.77 58.09 5.97 -107.50 -0.64 57.45 16 14 O -0.96 -24.08 16.18 -57.17 -0.93 -25.00 16 15 O -0.98 -21.63 15.66 -57.17 -0.90 -22.53 16 16 N -1.01 -15.95 3.23 -123.05 -0.40 -16.35 16 17 C 0.10 1.31 10.33 59.85 0.62 1.93 16 18 C 0.21 2.66 5.27 -5.19 -0.03 2.63 16 19 C -0.01 -0.15 6.91 -82.10 -0.57 -0.72 16 20 C -0.22 -2.16 11.12 -39.38 -0.44 -2.60 16 21 C -0.07 -0.63 12.30 29.74 0.37 -0.26 16 22 O 0.10 1.34 11.20 17.17 0.19 1.53 16 23 N -0.33 -5.32 12.07 33.42 0.40 -4.91 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.57 6.08 -51.93 -0.32 0.26 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 28 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 29 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.04 0.92 7.26 -51.93 -0.38 0.54 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.25 7.44 -51.93 -0.39 0.86 16 34 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.10 1.30 6.36 -51.93 -0.33 0.97 16 36 H 0.10 0.90 7.96 -51.93 -0.41 0.49 16 37 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.21 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -36.20 336.63 -7.04 -43.24 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -5.10 Total: -2.91 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.14 Total: -6.17 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: 0.42 Total: -67.68 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.63 Total: -46.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 58.09 SS G_CDS: -0.64 Total: 57.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.20 -7.04 -43.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.459 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds