Wall clock time and date at job start Tue Mar 31 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47388 * 2 1 4 4 C 1.46504 * 120.00269 * 275.00077 * 3 2 1 5 5 C 1.52997 * 109.47436 * 275.00362 * 4 3 2 6 6 C 1.47204 * 109.47308 * 179.97438 * 5 4 3 7 7 N 5.62370 * 113.40800 * 306.62590 * 2 1 3 8 8 S 1.65598 * 120.00291 * 95.00417 * 3 2 1 9 9 O 1.42095 * 106.40460 * 156.45756 * 8 3 2 10 10 O 1.42102 * 106.39910 * 23.53998 * 8 3 2 11 11 N 1.65597 * 107.21731 * 270.00206 * 8 3 2 12 12 C 1.47066 * 136.05747 * 89.99939 * 11 8 3 13 13 C 1.53504 * 88.04678 * 207.12290 * 12 11 8 14 14 O 1.42902 * 114.20451 * 87.54970 * 13 12 11 15 15 C 1.50703 * 114.20523 * 220.37340 * 13 12 11 16 16 H 1.08004 * 119.99655 * 0.02562 * 15 13 12 17 17 C 1.37874 * 119.99845 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99837 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99979 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46984 * 59.99712 * 19 17 15 21 21 H 1.48497 * 109.47149 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46659 * 299.99467 * 19 17 15 23 23 C 1.47064 * 136.05593 * 270.04237 * 11 8 3 24 24 H 1.08993 * 109.47260 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46753 * 299.99822 * 1 2 3 26 26 H 1.08993 * 109.47138 * 59.99153 * 1 2 3 27 27 H 1.09004 * 109.46753 * 240.00178 * 2 1 3 28 28 H 1.08995 * 109.47807 * 120.00518 * 2 1 3 29 29 H 1.08998 * 109.46723 * 35.00153 * 4 3 2 30 30 H 1.08998 * 109.47132 * 154.99905 * 4 3 2 31 31 H 1.08998 * 109.46994 * 299.99625 * 5 4 3 32 32 H 1.08998 * 109.47333 * 59.99666 * 5 4 3 33 33 H 1.09002 * 113.46793 * 321.93262 * 12 11 8 34 34 H 1.08999 * 113.46805 * 92.31629 * 12 11 8 35 35 H 0.96697 * 113.99512 * 180.02562 * 14 13 12 36 36 H 0.97004 * 119.99468 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.47096 * 267.62681 * 23 11 8 38 38 H 1.09005 * 113.46966 * 38.01074 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5151 1.7839 -1.8919 6 6 3.6555 2.5144 -3.1621 7 7 3.7641 3.0789 -4.1418 8 16 2.4123 2.1201 1.4286 9 8 3.3286 3.1568 1.1048 10 8 2.7097 1.0798 2.3498 11 7 1.0434 2.8641 1.9895 12 6 -0.0847 2.4918 2.8565 13 6 -0.9379 3.5184 2.0985 14 8 -1.5705 3.0026 0.9256 15 6 -1.8650 4.3196 2.9759 16 1 -1.8855 4.1446 4.0415 17 6 -2.6868 5.2759 2.4182 18 7 -2.6614 5.4892 1.1207 19 14 -3.8355 6.2695 3.5058 20 1 -3.0399 7.0211 4.5095 21 1 -4.6061 7.2245 2.6696 22 1 -4.7732 5.3529 4.2029 23 6 0.4202 4.1877 1.8391 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.3618 1.8098 -1.9452 30 1 2.0923 3.1802 -1.0755 31 1 4.3117 2.0828 -1.2105 32 1 3.5812 0.7123 -2.0802 33 1 -0.4179 1.4633 2.7176 34 1 0.0711 2.7463 3.9048 35 1 -2.1068 3.6519 0.4503 36 1 -3.2394 6.1622 0.7285 37 1 0.7101 4.8948 2.6164 38 1 0.5172 4.6017 0.8354 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337135868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:07 Heat of formation + Delta-G solvation = -59.575413 kcal Electronic energy + Delta-G solvation = -24035.070555 eV Core-core repulsion = 20427.175584 eV Total energy + Delta-G solvation = -3607.894972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.65786 -37.67477 -36.96762 -36.23979 -35.53297 -33.98385 -32.23501 -32.16971 -29.20207 -27.87714 -25.12082 -24.72091 -24.35886 -22.30690 -19.67897 -18.40223 -17.90951 -17.80429 -17.15766 -16.63453 -16.19026 -15.26538 -15.04568 -14.68248 -14.39061 -14.18231 -13.84741 -13.67875 -13.26781 -13.12975 -12.91741 -12.82202 -12.63529 -12.24310 -11.97301 -11.85969 -11.79932 -11.76323 -11.73986 -11.53442 -11.53080 -11.07909 -10.99528 -10.87153 -10.67678 -10.48655 -10.26276 -9.38303 -9.13631 -8.79642 -8.57740 -8.09491 -6.39703 -4.49177 0.85341 2.63244 2.70563 3.10885 3.16238 3.22384 3.24927 3.73223 3.99516 4.18011 4.49926 4.68516 4.85264 4.86612 5.02727 5.24427 5.34638 5.39773 5.46212 5.56481 5.76670 5.83258 5.87817 6.03833 6.08759 6.20753 6.26671 6.31873 6.54320 6.62267 6.71945 6.81476 7.01066 7.46315 7.49214 7.65910 7.83350 8.53688 9.21692 9.47623 10.66482 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.004886 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.215792 B = 5728.837126 C = 6226.897933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.112 3.888 3 N -1.000 6.000 4 C 0.135 3.865 5 C -0.050 4.050 6 C 0.215 3.785 7 N -0.437 5.437 8 S 2.804 3.196 9 O -0.982 6.982 10 O -0.984 6.984 11 N -1.046 6.046 12 C 0.135 3.865 13 C 0.243 3.757 14 O -0.570 6.570 15 C -0.534 4.534 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.106 3.894 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.077 0.923 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -8.879 -2.437 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 N -0.837 5.837 4 C 0.007 3.993 5 C -0.092 4.092 6 C -0.104 4.104 7 N -0.115 5.115 8 S 2.815 3.185 9 O -0.967 6.967 10 O -0.969 6.969 11 N -0.889 5.889 12 C 0.010 3.990 13 C 0.199 3.801 14 O -0.383 6.383 15 C -0.573 4.573 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.539 5.539 19 Si 0.734 3.266 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.020 4.020 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.314 -8.604 -3.553 11.839 hybrid contribution -1.158 0.910 0.473 1.547 sum 6.156 -7.695 -3.080 10.325 Atomic orbital electron populations 1.22235 0.95041 1.01726 1.04282 1.21374 0.95201 0.81162 1.03533 1.58051 1.81462 1.22789 1.21439 1.20994 0.94844 0.97456 0.86047 1.19820 1.01628 0.99975 0.87736 1.28937 0.93394 0.93656 0.94397 1.81225 1.08424 1.09512 1.12292 1.01125 0.72305 0.72459 0.72589 1.93572 1.60606 1.57783 1.84707 1.93552 1.83506 1.58136 1.61682 1.60038 1.40208 1.26699 1.61940 1.22806 0.82428 0.99868 0.93945 1.19678 0.87595 0.88472 0.84363 1.85984 1.68327 1.43392 1.40585 1.21478 1.22130 1.19096 0.94626 0.91108 1.25051 0.96373 0.96209 0.95308 1.69245 1.39698 1.34596 1.10397 0.86410 0.80458 0.79574 0.80180 1.19924 1.21085 1.19903 1.23630 0.94574 0.83302 1.00478 0.92173 0.90995 0.91942 0.90474 0.89290 0.89212 0.89181 0.86776 0.86929 0.91889 0.89939 0.75079 0.91601 0.90499 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.23 6.40 -4.05 -0.03 1.20 16 3 N -1.00 -12.89 2.84 -114.39 -0.32 -13.22 16 4 C 0.13 1.52 5.30 -4.04 -0.02 1.49 16 5 C -0.05 -0.45 6.02 -29.52 -0.18 -0.63 16 6 C 0.21 2.50 15.43 -20.76 -0.32 2.18 16 7 N -0.44 -6.37 18.54 42.15 0.78 -5.59 16 8 S 2.80 47.16 6.64 -107.50 -0.71 46.45 16 9 O -0.98 -18.24 17.11 -57.17 -0.98 -19.22 16 10 O -0.98 -18.18 16.69 -57.17 -0.95 -19.13 16 11 N -1.05 -19.46 4.29 -124.97 -0.54 -20.00 16 12 C 0.13 2.58 8.06 -8.50 -0.07 2.52 16 13 C 0.24 5.31 1.59 -91.19 -0.14 5.17 16 14 O -0.57 -12.84 13.54 -35.23 -0.48 -13.31 16 15 C -0.53 -12.71 8.69 -34.44 -0.30 -13.01 16 16 H 0.07 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 18 N -0.90 -21.95 11.01 55.43 0.61 -21.34 16 19 Si 0.91 18.95 29.54 -169.99 -5.02 13.93 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C 0.11 2.18 8.15 -8.44 -0.07 2.11 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.08 6.80 -51.93 -0.35 0.73 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 28 H 0.09 1.02 6.91 -51.93 -0.36 0.66 16 29 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.09 1.15 7.61 -51.93 -0.40 0.76 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.13 6.90 -51.93 -0.36 0.77 16 34 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 35 H 0.39 9.36 6.33 45.56 0.29 9.65 16 36 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -28.75 340.60 -7.84 -36.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.52 Total: 8.76 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.84 Total: 0.95 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.53 Total: -60.14 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -2.41 Total: -51.67 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.71 Total: 46.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.75 -7.84 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337135868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.980 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds