Wall clock time and date at job start Tue Mar 31 2020 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47183 * 2 1 4 4 C 1.50694 * 109.47071 * 239.99915 * 2 1 3 5 5 H 1.08005 * 120.00429 * 240.00700 * 4 2 1 6 6 C 1.37878 * 119.99996 * 60.00115 * 4 2 1 7 7 N 1.31517 * 119.99703 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00243 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47224 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.46899 * 300.00041 * 8 6 4 11 11 H 1.48497 * 109.47098 * 60.00263 * 8 6 4 12 12 N 1.46499 * 109.46846 * 120.00282 * 2 1 3 13 13 C 1.46498 * 120.00324 * 61.73321 * 12 2 1 14 14 S 1.65605 * 119.99732 * 241.72746 * 12 2 1 15 15 O 1.42108 * 106.40221 * 197.77133 * 14 12 2 16 16 O 1.42095 * 106.40243 * 330.69414 * 14 12 2 17 17 N 1.65603 * 107.21534 * 84.23874 * 14 12 2 18 18 C 1.46503 * 119.99547 * 271.19512 * 17 14 12 19 19 C 1.46497 * 120.00321 * 91.19653 * 17 14 12 20 20 C 1.50703 * 109.47207 * 95.55762 * 19 17 14 21 21 C 1.41378 * 126.79994 * 94.86057 * 20 19 17 22 22 C 1.35455 * 103.98338 * 179.88969 * 21 20 19 23 23 O 1.34033 * 106.44584 * 0.36932 * 22 21 20 24 24 N 1.20925 * 111.57056 * 359.74669 * 23 22 21 25 25 H 1.08997 * 109.47401 * 53.02857 * 1 2 3 26 26 H 1.09004 * 109.47512 * 173.03445 * 1 2 3 27 27 H 1.09004 * 109.47058 * 293.03635 * 1 2 3 28 28 H 0.97008 * 119.99911 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47323 * 89.99982 * 13 12 2 30 30 H 1.09007 * 109.47212 * 209.99850 * 13 12 2 31 31 H 1.09001 * 109.46992 * 329.99690 * 13 12 2 32 32 H 1.08997 * 109.47049 * 89.99830 * 18 17 14 33 33 H 1.09000 * 109.46817 * 210.00007 * 18 17 14 34 34 H 1.09005 * 109.47184 * 329.99946 * 18 17 14 35 35 H 1.08998 * 109.46977 * 215.56149 * 19 17 14 36 36 H 1.08999 * 109.47146 * 335.55824 * 19 17 14 37 37 H 1.08004 * 128.00912 * 0.02830 * 21 20 19 38 38 H 1.07999 * 126.77313 * 180.09996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.8258 -0.4205 -5.2204 10 1 3.8062 -1.1209 -4.0081 11 1 1.8256 -2.5201 -4.0078 12 7 2.0182 -0.6907 1.1961 13 6 1.6959 -2.1038 1.4089 14 16 2.9347 0.1261 2.3077 15 8 3.5871 -0.8619 3.0936 16 8 3.6331 1.1337 1.5893 17 7 1.8887 0.9140 3.3213 18 6 1.4288 2.2656 2.9927 19 6 1.4233 0.2596 4.5466 20 6 2.2849 0.6914 5.7052 21 6 2.0198 1.7432 6.6119 22 6 3.0801 1.7239 7.4546 23 8 3.8802 0.7337 7.0353 24 7 3.4235 0.1735 6.0658 25 1 -0.3634 0.6180 -0.8210 26 1 -0.3634 -1.0201 -0.1246 27 1 -0.3633 0.4022 0.9458 28 1 0.7086 1.1613 -3.4843 29 1 2.4694 -2.7250 0.9571 30 1 1.6449 -2.3078 2.4785 31 1 0.7337 -2.3302 0.9496 32 1 0.5181 2.2047 2.3969 33 1 1.2253 2.8138 3.9126 34 1 2.2009 2.7839 2.4240 35 1 0.3881 0.5419 4.7386 36 1 1.4890 -0.8220 4.4283 37 1 1.1679 2.4069 6.6300 38 1 3.2497 2.3801 8.2955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337966986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:59 Heat of formation + Delta-G solvation = 0.989038 kcal Electronic energy + Delta-G solvation = -24048.790857 eV Core-core repulsion = 20443.522157 eV Total energy + Delta-G solvation = -3605.268700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.98339 -36.81437 -36.60407 -36.13967 -35.16992 -33.62379 -32.56129 -31.71632 -29.13161 -28.20203 -25.56025 -25.18946 -24.89848 -23.21889 -21.22043 -20.71093 -18.57921 -17.84947 -17.61573 -17.16056 -16.86498 -16.29517 -15.84776 -15.25170 -14.79631 -14.31522 -14.00676 -13.65873 -13.40986 -13.23863 -12.85278 -12.79237 -12.56544 -12.21449 -11.92710 -11.70899 -11.45943 -11.35089 -11.31302 -11.19598 -11.03762 -10.97193 -10.80834 -10.48739 -10.29296 -10.26864 -10.00829 -9.72512 -9.25847 -9.05735 -8.46208 -7.96449 -6.07680 -4.13223 1.11283 1.47440 2.16114 3.21224 3.31070 3.35031 3.38674 3.48214 4.04714 4.14015 4.40493 4.44588 4.87619 4.95865 5.06571 5.24164 5.25261 5.30243 5.44258 5.59021 5.62317 5.75966 5.88379 5.97228 6.07194 6.16394 6.37464 6.57770 6.65541 6.78530 6.81189 6.99245 7.45458 7.63057 7.78288 8.01966 8.26527 8.27170 8.88398 9.52372 10.98649 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.004274 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.500186 B = 6550.209667 C = 6764.775479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.055 0.945 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.772 3.228 15 O -0.979 6.979 16 O -0.972 6.972 17 N -1.008 6.008 18 C 0.086 3.914 19 C 0.207 3.793 20 C -0.010 4.010 21 C -0.224 4.224 22 C -0.071 4.071 23 O 0.103 5.897 24 N -0.333 5.333 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.011 0.989 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.171 0.829 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 2.842 17.799 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.073 0.927 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.781 3.219 15 O -0.963 6.963 16 O -0.956 6.956 17 N -0.846 5.846 18 C -0.060 4.060 19 C 0.080 3.920 20 C -0.171 4.171 21 C -0.246 4.246 22 C -0.152 4.152 23 O 0.033 5.967 24 N -0.034 5.034 25 H 0.107 0.893 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.188 0.812 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.859 1.984 17.211 17.424 hybrid contribution -0.834 0.340 -0.686 1.133 sum -2.693 2.324 16.525 16.903 Atomic orbital electron populations 1.22106 0.98226 1.00791 0.99286 1.18704 0.91224 0.92760 0.80728 0.92739 1.21282 1.31665 1.13018 0.90016 0.92002 1.24898 0.94926 0.95006 0.98969 1.69862 1.36550 1.22712 1.23870 0.86555 0.79386 0.79595 0.81869 1.21204 1.20144 1.20227 1.57796 1.71519 1.18837 1.35118 1.21141 1.01808 0.81670 0.98957 1.02347 0.73804 0.73230 0.72507 1.93584 1.72390 1.59987 1.70354 1.93583 1.69987 1.59816 1.72176 1.58232 1.66685 1.26431 1.33270 1.21559 1.01033 0.82128 1.01243 1.19338 0.95456 0.97849 0.79367 1.24234 0.95144 0.96951 1.00821 1.22740 1.02506 1.02006 0.97300 1.26027 0.91854 0.95031 1.02324 1.84908 1.42130 1.36072 1.33580 1.74097 1.11551 1.17775 0.99961 0.89318 0.94581 0.97022 0.92680 0.93302 0.93252 0.91006 0.92064 0.91488 0.89988 0.88207 0.88493 0.81152 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.73 37.16 0.32 -2.88 16 2 C 0.27 6.56 2.61 -69.09 -0.18 6.38 16 3 H 0.05 1.47 7.04 -51.93 -0.37 1.10 16 4 C -0.52 -14.11 8.34 -34.44 -0.29 -14.40 16 5 H 0.06 1.68 7.55 -52.48 -0.40 1.28 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.65 11.40 55.43 0.63 -24.02 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.99 -20.98 3.12 -115.86 -0.36 -21.34 16 13 C 0.11 2.02 9.47 59.85 0.57 2.59 16 14 S 2.77 57.35 6.01 -107.50 -0.65 56.71 16 15 O -0.98 -21.39 15.94 -57.17 -0.91 -22.31 16 16 O -0.97 -23.64 15.50 -57.17 -0.89 -24.53 16 17 N -1.01 -15.95 3.23 -123.05 -0.40 -16.35 16 18 C 0.09 1.18 10.68 59.85 0.64 1.82 16 19 C 0.21 2.70 5.93 -5.19 -0.03 2.67 16 20 C -0.01 -0.14 6.90 -82.10 -0.57 -0.71 16 21 C -0.22 -2.14 11.12 -39.38 -0.44 -2.57 16 22 C -0.07 -0.61 12.30 29.74 0.37 -0.24 16 23 O 0.10 1.32 11.20 17.19 0.19 1.52 16 24 N -0.33 -5.29 12.07 33.42 0.40 -4.89 16 25 H 0.09 2.17 6.29 -51.93 -0.33 1.84 16 26 H 0.04 0.77 7.01 -51.93 -0.36 0.41 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 31 H 0.07 1.25 6.66 -51.93 -0.35 0.91 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.08 1.27 7.03 -51.93 -0.36 0.90 16 35 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.10 1.30 7.56 -51.93 -0.39 0.90 16 37 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -34.64 332.48 -6.73 -41.36 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.04 Total: -1.69 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.30 Total: -5.70 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.28 Total: -66.60 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.60 Total: -45.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 57.35 SS G_CDS: -0.65 Total: 56.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.64 -6.73 -41.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337966986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.353 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds