Wall clock time and date at job start Tue Mar 31 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 S 1.65594 * 120.00414 * 119.99671 * 12 2 1 15 15 O 1.42095 * 106.40343 * 203.53804 * 14 12 2 16 16 O 1.42099 * 106.40342 * 336.46210 * 14 12 2 17 17 N 1.65600 * 107.21781 * 89.99807 * 14 12 2 18 18 C 1.46496 * 119.99969 * 90.00075 * 17 14 12 19 19 C 1.46506 * 120.00272 * 270.00596 * 17 14 12 20 20 C 1.50696 * 109.47460 * 94.99276 * 19 17 14 21 21 C 1.41387 * 126.79512 * 94.71067 * 20 19 17 22 22 C 1.35457 * 103.98119 * 179.88816 * 21 20 19 23 23 O 1.34045 * 106.44669 * 0.37654 * 22 21 20 24 24 N 1.20926 * 111.56396 * 359.74171 * 23 22 21 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 30 30 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 31 31 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 32 32 H 1.09002 * 109.47245 * 90.00229 * 18 17 14 33 33 H 1.09004 * 109.47639 * 210.00079 * 18 17 14 34 34 H 1.09003 * 109.47392 * 330.00199 * 18 17 14 35 35 H 1.08995 * 109.47018 * 215.00192 * 19 17 14 36 36 H 1.09001 * 109.46595 * 334.99795 * 19 17 14 37 37 H 1.07998 * 128.01053 * 0.02623 * 21 20 19 38 38 H 1.07994 * 126.77833 * 180.09468 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5259 16 8 2.6904 1.4974 -2.1192 17 7 4.5438 -0.1040 -1.8180 18 6 5.3069 -1.2471 -2.3250 19 6 5.1725 0.8459 -0.8968 20 6 5.0580 0.3285 0.5139 21 6 6.0234 -0.4251 1.2205 22 6 5.4519 -0.6370 2.4301 23 8 4.2487 -0.0475 2.3900 24 7 4.0485 0.4817 1.3212 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 0.7377 -2.1443 -1.9995 30 1 2.4630 -2.5817 -1.9865 31 1 1.5296 -2.5968 -0.4710 32 1 5.8122 -0.9657 -3.2489 33 1 6.0470 -1.5477 -1.5832 34 1 4.6296 -2.0785 -2.5200 35 1 6.2245 0.9623 -1.1570 36 1 4.6709 1.8108 -0.9716 37 1 6.9929 -0.7536 0.8763 38 1 5.8792 -1.1784 3.2612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337966995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:03 Heat of formation + Delta-G solvation = 25.454307 kcal Electronic energy + Delta-G solvation = -25747.027510 eV Core-core repulsion = 22142.819704 eV Total energy + Delta-G solvation = -3604.207806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.01732 -36.74993 -36.33224 -36.09917 -35.23139 -32.98942 -32.53204 -30.78218 -29.03887 -27.84578 -25.53173 -25.21769 -24.67262 -22.33794 -20.81283 -20.34600 -18.40624 -17.32670 -17.16293 -16.75915 -16.67232 -16.33849 -15.56244 -14.86963 -14.62128 -14.14683 -13.68308 -13.40791 -13.28650 -12.91633 -12.70190 -12.48059 -12.37184 -11.99859 -11.93368 -11.76119 -11.41472 -11.27829 -11.19518 -11.13712 -10.87250 -10.72428 -10.42574 -10.23552 -10.04249 -9.96745 -9.44016 -9.26144 -8.92232 -8.71905 -8.28692 -7.90649 -6.04624 -3.97965 1.22317 2.34981 2.92116 3.18836 3.33301 3.35596 3.59922 4.11802 4.20917 4.47582 4.83700 4.96060 5.04491 5.24911 5.34400 5.57552 5.61444 5.67889 5.81662 5.86770 5.92316 6.02511 6.17852 6.19109 6.35779 6.44691 6.65529 6.73367 6.80455 6.91329 6.95963 7.17755 7.54448 7.65323 7.86135 8.08889 8.31319 8.87583 9.27118 9.53277 10.99327 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.009415 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.166594 B = 2973.146710 C = 3932.359441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.270 3.730 3 H 0.065 0.935 4 C -0.488 4.488 5 H 0.053 0.947 6 C 0.082 3.918 7 N -0.868 5.868 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.293 1.293 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.778 3.222 15 O -0.997 6.997 16 O -0.977 6.977 17 N -1.006 6.006 18 C 0.101 3.899 19 C 0.210 3.790 20 C -0.090 4.090 21 C -0.217 4.217 22 C -0.112 4.112 23 O 0.124 5.876 24 N -0.231 5.231 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.153 0.847 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.710 -4.305 -3.006 11.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.168 3.832 3 H 0.083 0.917 4 C -0.530 4.530 5 H 0.072 0.928 6 C -0.123 4.123 7 N -0.505 5.505 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.221 1.221 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.981 6.981 16 O -0.961 6.961 17 N -0.845 5.845 18 C -0.045 4.045 19 C 0.084 3.916 20 C -0.248 4.248 21 C -0.239 4.239 22 C -0.192 4.192 23 O 0.049 5.951 24 N 0.071 4.929 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.171 0.829 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.231 -3.042 -3.815 9.569 hybrid contribution 1.391 -1.473 1.234 2.372 sum 9.622 -4.515 -2.581 10.938 Atomic orbital electron populations 1.22093 0.98367 0.99454 1.00678 1.18775 0.91371 0.93133 0.79954 0.91740 1.21165 1.30112 1.11452 0.90247 0.92845 1.24838 0.94552 0.94370 0.98543 1.69870 1.35405 1.21680 1.23580 0.86512 0.78413 0.79455 0.83285 1.20086 1.20357 1.22132 1.57785 1.64223 1.21215 1.39983 1.21156 0.98746 0.82231 1.01632 1.01994 0.72512 0.73534 0.73155 1.93529 1.85966 1.76349 1.42260 1.93566 1.83572 1.32180 1.86812 1.58106 1.31306 1.35766 1.59277 1.21329 0.96931 0.87652 0.98546 1.19296 0.99485 0.91581 0.81266 1.23911 0.92116 1.08082 1.00737 1.22382 1.01993 1.05050 0.94460 1.25700 0.88624 1.04050 1.00791 1.84943 1.29842 1.51350 1.28930 1.74594 1.16040 1.10657 0.91603 0.95084 0.88874 0.97093 0.92746 0.93933 0.93596 0.90376 0.92923 0.91387 0.91718 0.89161 0.88015 0.82948 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.27 6.60 2.21 -69.08 -0.15 6.45 16 3 H 0.06 1.78 6.59 -51.93 -0.34 1.43 16 4 C -0.49 -12.09 4.16 -34.44 -0.14 -12.24 16 5 H 0.05 1.34 7.27 -52.48 -0.38 0.96 16 6 C 0.08 2.07 4.06 -17.82 -0.07 2.00 16 7 N -0.87 -23.24 11.32 55.43 0.63 -22.62 16 8 Si 0.89 20.14 25.84 -169.99 -4.39 15.75 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.99 -21.19 3.12 -115.84 -0.36 -21.55 16 13 C 0.11 2.01 9.28 59.85 0.56 2.57 16 14 S 2.78 57.33 6.02 -107.50 -0.65 56.68 16 15 O -1.00 -21.16 16.28 -57.17 -0.93 -22.09 16 16 O -0.98 -23.00 15.26 -57.17 -0.87 -23.87 16 17 N -1.01 -17.07 3.23 -123.05 -0.40 -17.47 16 18 C 0.10 1.35 10.31 59.84 0.62 1.97 16 19 C 0.21 3.44 6.25 -5.19 -0.03 3.41 16 20 C -0.09 -1.66 6.91 -82.10 -0.57 -2.22 16 21 C -0.22 -3.32 11.12 -39.38 -0.44 -3.76 16 22 C -0.11 -1.85 12.06 29.74 0.36 -1.49 16 23 O 0.12 2.61 5.09 17.16 0.09 2.70 16 24 N -0.23 -5.07 7.37 33.42 0.25 -4.82 16 25 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.74 7.37 -51.92 -0.38 0.36 16 31 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.06 0.87 7.37 -51.93 -0.38 0.48 16 35 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 36 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 37 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -30.94 311.47 -6.50 -37.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.01 Total: 1.65 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 0.46 Total: -6.51 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 0.12 Total: -66.46 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -1.72 Total: -43.25 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.39 Total: 15.75 kcal Atomic # 16 Polarization: 57.33 SS G_CDS: -0.65 Total: 56.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.94 -6.50 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337966995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.900 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds