Wall clock time and date at job start Tue Mar 31 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99745 * 2 1 4 4 N 1.34776 * 119.99889 * 180.02562 * 2 1 3 5 5 C 1.40129 * 119.99557 * 183.76956 * 4 2 1 6 6 C 1.39116 * 119.92390 * 32.99130 * 5 4 2 7 7 C 1.38010 * 120.33151 * 179.74555 * 6 5 4 8 8 C 1.38677 * 120.17094 * 0.55528 * 7 6 5 9 9 O 1.35719 * 120.08302 * 179.71827 * 8 7 6 10 10 C 1.40170 * 119.83064 * 359.45100 * 8 7 6 11 11 C 1.47445 * 120.16342 * 180.29485 * 10 8 7 12 12 O 1.21629 * 119.99594 * 318.13577 * 11 10 8 13 13 N 1.34769 * 120.00074 * 138.13424 * 11 10 8 14 14 C 1.36904 * 120.00078 * 186.07617 * 13 11 10 15 15 H 1.07999 * 119.99860 * 344.52017 * 14 13 11 16 16 C 1.39018 * 120.00321 * 164.51717 * 14 13 11 17 17 N 1.31386 * 119.99974 * 26.14491 * 16 14 13 18 18 Si 1.86797 * 120.00353 * 206.14375 * 16 14 13 19 19 H 1.48507 * 109.47071 * 89.99832 * 18 16 14 20 20 H 1.48496 * 109.47499 * 209.99712 * 18 16 14 21 21 H 1.48500 * 109.47205 * 330.00118 * 18 16 14 22 22 C 1.46498 * 120.00289 * 6.08286 * 13 11 10 23 23 C 1.47196 * 109.47934 * 112.72404 * 22 13 11 24 24 N 6.35985 * 104.96598 * 202.95692 * 2 1 3 25 25 C 1.38376 * 119.91569 * 213.01753 * 5 4 2 26 26 H 1.09000 * 109.47234 * 270.00034 * 1 2 3 27 27 H 1.09003 * 109.47468 * 30.00116 * 1 2 3 28 28 H 1.09006 * 109.47112 * 149.99793 * 1 2 3 29 29 H 0.97002 * 119.99876 * 3.75898 * 4 2 1 30 30 H 1.08004 * 119.83404 * 0.02794 * 6 5 4 31 31 H 1.08008 * 119.91220 * 180.28208 * 7 6 5 32 32 H 0.96699 * 114.00233 * 269.72787 * 9 8 7 33 33 H 0.96996 * 120.00070 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.46887 * 232.72483 * 22 13 11 35 35 H 1.09008 * 109.46978 * 352.71899 * 22 13 11 36 36 H 1.08000 * 120.08784 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5799 -1.1685 0.0793 6 6 4.2344 -0.1802 0.8076 7 6 5.6116 -0.1765 0.8961 8 6 6.3543 -1.1527 0.2491 9 8 7.7089 -1.1439 0.3327 10 6 5.7021 -2.1517 -0.4867 11 6 6.4842 -3.1969 -1.1721 12 8 7.5039 -2.9023 -1.7660 13 7 6.0692 -4.4787 -1.1405 14 6 6.8566 -5.4664 -1.6685 15 1 7.6764 -5.2111 -2.3236 16 6 6.6010 -6.7979 -1.3614 17 7 5.3872 -7.1736 -1.0268 18 14 7.9830 -8.0530 -1.4244 19 1 8.6415 -8.1314 -0.0956 20 1 7.4278 -9.3834 -1.7808 21 1 8.9787 -7.6421 -2.4467 22 6 4.7754 -4.8153 -0.5413 23 6 3.8576 -5.2901 -1.5896 24 7 3.1494 -5.6575 -2.3964 25 6 4.3071 -2.1525 -0.5671 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 1.6974 -2.0063 -0.0560 30 1 3.6615 0.5852 1.3100 31 1 6.1125 0.5914 1.4671 32 1 8.1428 -0.6358 -0.3663 33 1 5.2090 -8.1026 -0.8122 34 1 4.9129 -5.5992 0.2036 35 1 4.3549 -3.9302 -0.0638 36 1 3.7978 -2.9191 -1.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339163789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:38 Heat of formation + Delta-G solvation = -19.566289 kcal Electronic energy + Delta-G solvation = -24517.319373 eV Core-core repulsion = 20775.715376 eV Total energy + Delta-G solvation = -3741.603997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70541 -39.54997 -37.98815 -36.67150 -35.76272 -34.29225 -34.23795 -32.29406 -30.79290 -30.58369 -27.95105 -27.48319 -25.36741 -23.28650 -22.41971 -21.10102 -19.60168 -18.16421 -18.05312 -17.50983 -17.16679 -16.22863 -16.09518 -15.59158 -15.29226 -15.05244 -14.70444 -14.17965 -14.12250 -13.90099 -13.53321 -13.14718 -13.03151 -12.88604 -12.58995 -12.39001 -12.24764 -11.89731 -11.76446 -11.58728 -11.29478 -11.28350 -10.65240 -10.45753 -10.40317 -10.33250 -10.26765 -9.91193 -9.11009 -8.84348 -8.55286 -8.28408 -7.88699 -6.66789 -4.03020 1.18982 1.29568 2.42065 2.94285 3.07424 3.18517 3.22604 3.45624 3.67202 3.85538 4.03500 4.13043 4.51458 4.55960 4.62404 4.81605 4.91027 5.02215 5.09977 5.17517 5.33870 5.42941 5.48451 5.57465 5.64008 5.89790 6.07429 6.14804 6.27921 6.43370 6.59102 6.64952 6.92598 7.25603 7.34382 7.79452 7.94683 8.04980 8.19090 8.74798 8.89787 9.07674 9.64026 10.35780 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.004938 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.508330 B = 5669.360495 C = 6977.369705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.530 6.530 4 N -0.671 5.671 5 C 0.126 3.874 6 C -0.099 4.099 7 C -0.133 4.133 8 C 0.138 3.862 9 O -0.485 6.485 10 C -0.106 4.106 11 C 0.494 3.506 12 O -0.567 6.567 13 N -0.431 5.431 14 C -0.312 4.312 15 H 0.114 0.886 16 C 0.040 3.960 17 N -0.870 5.870 18 Si 0.928 3.072 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.192 3.808 23 C 0.260 3.740 24 N -0.477 5.477 25 C -0.120 4.120 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.413 0.587 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.394 0.606 33 H 0.277 0.723 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 9.901 7.259 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.406 6.406 4 N -0.317 5.317 5 C 0.033 3.967 6 C -0.119 4.119 7 C -0.152 4.152 8 C 0.091 3.909 9 O -0.295 6.295 10 C -0.111 4.111 11 C 0.284 3.716 12 O -0.451 6.451 13 N -0.150 5.150 14 C -0.439 4.439 15 H 0.131 0.869 16 C -0.164 4.164 17 N -0.509 5.509 18 Si 0.754 3.246 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.191 1.191 22 C 0.066 3.934 23 C -0.058 4.058 24 N -0.158 5.158 25 C -0.141 4.141 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.249 0.751 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.116 0.884 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.627 9.697 6.299 14.426 hybrid contribution 0.575 -1.023 -0.177 1.187 sum -8.052 8.673 6.122 13.324 Atomic orbital electron populations 1.21891 0.90832 1.05321 1.05073 1.20979 0.90845 0.83156 0.75204 1.90737 1.70529 1.31238 1.48107 1.43674 1.05076 1.09938 1.72995 1.17554 0.82522 0.97603 0.99050 1.20995 0.93929 0.98720 0.98258 1.21220 0.93567 0.98654 1.01763 1.18367 0.83809 0.93059 0.95701 1.84694 1.14601 1.76349 1.53897 1.20449 0.92918 0.98264 0.99437 1.17448 0.86803 0.81742 0.85631 1.90629 1.26958 1.80682 1.46819 1.43544 1.14603 1.05757 1.51084 1.19759 1.11077 0.84827 1.28204 0.86865 1.25342 0.97042 0.98195 0.95817 1.69799 1.17976 1.18847 1.44236 0.85893 0.80944 0.78598 0.79203 1.19832 1.21060 1.19135 1.19731 0.81209 1.01106 0.91403 1.28794 0.92059 0.90969 0.93987 1.80833 1.13504 1.11568 1.09881 1.21201 0.92933 0.99672 1.00307 0.88457 0.88582 0.89809 0.75112 0.84444 0.84842 0.74845 0.91224 0.85364 0.88419 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.30 36.01 0.37 -0.69 16 2 C 0.51 5.56 7.70 -10.99 -0.08 5.48 16 3 O -0.53 -7.90 14.69 5.55 0.08 -7.82 16 4 N -0.67 -7.25 5.35 -9.87 -0.05 -7.30 16 5 C 0.13 1.76 6.29 -83.69 -0.53 1.24 16 6 C -0.10 -1.38 8.65 -39.34 -0.34 -1.72 16 7 C -0.13 -1.88 9.97 -39.50 -0.39 -2.27 16 8 C 0.14 2.33 6.69 -38.69 -0.26 2.07 16 9 O -0.48 -8.24 12.32 -33.84 -0.42 -8.66 16 10 C -0.11 -1.98 5.34 -104.86 -0.56 -2.54 16 11 C 0.49 11.41 7.06 -12.51 -0.09 11.32 16 12 O -0.57 -14.72 15.84 -9.73 -0.15 -14.87 16 13 N -0.43 -10.15 2.71 -119.15 -0.32 -10.47 16 14 C -0.31 -8.08 9.09 -15.00 -0.14 -8.22 16 15 H 0.11 3.12 7.36 -52.49 -0.39 2.73 16 16 C 0.04 0.99 5.28 -17.45 -0.09 0.89 16 17 N -0.87 -21.04 8.43 55.50 0.47 -20.57 16 18 Si 0.93 19.73 29.63 -169.99 -5.04 14.69 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C 0.19 3.85 4.81 -6.83 -0.03 3.81 16 23 C 0.26 5.64 11.90 -20.80 -0.25 5.40 16 24 N -0.48 -11.05 18.53 42.10 0.78 -10.27 16 25 C -0.12 -1.91 7.23 -38.97 -0.28 -2.19 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.41 3.27 8.81 -40.82 -0.36 2.91 16 30 H 0.14 1.86 6.32 -52.48 -0.33 1.53 16 31 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.39 5.37 9.06 45.56 0.41 5.78 16 33 H 0.28 6.44 8.31 -40.82 -0.34 6.11 16 34 H 0.13 2.65 6.42 -51.93 -0.33 2.32 16 35 H 0.10 1.62 3.73 -51.92 -0.19 1.43 16 36 H 0.14 2.19 5.20 -52.49 -0.27 1.92 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -33.41 316.81 -4.84 -38.25 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.29 Total: 9.67 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -2.67 Total: 12.57 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.87 Total: -48.61 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.49 Total: -31.35 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.04 Total: 14.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.41 -4.84 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339163789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.688 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds