Wall clock time and date at job start Tue Mar 31 2020 03:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 110.53595 * 2 1 4 4 C 1.38404 * 119.92674 * 237.42377 * 3 2 1 5 5 C 1.38350 * 120.30709 * 180.26047 * 4 3 2 6 6 C 1.37960 * 120.15221 * 359.47964 * 5 4 3 7 7 C 1.39627 * 119.84259 * 0.25964 * 6 5 4 8 8 C 1.47736 * 120.14937 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99852 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99607 * 359.97438 * 8 7 6 11 11 C 1.36871 * 119.99747 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99766 * 0.02562 * 11 10 8 13 13 C 1.39041 * 120.00007 * 180.02562 * 11 10 8 14 14 N 1.31362 * 120.00190 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99985 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47496 * 90.00002 * 15 13 11 17 17 H 1.48502 * 109.47450 * 210.00228 * 15 13 11 18 18 H 1.48505 * 109.47474 * 329.99935 * 15 13 11 19 19 C 1.37917 * 119.92709 * 57.16757 * 3 2 1 20 20 N 1.47315 * 110.59951 * 237.16775 * 2 1 3 21 21 C 1.34530 * 106.61817 * 241.32253 * 20 2 1 22 22 O 1.21529 * 123.77017 * 180.02562 * 21 20 2 23 23 N 1.33792 * 112.45913 * 359.97438 * 21 20 2 24 24 C 1.34773 * 111.64367 * 0.02562 * 23 21 20 25 25 O 1.21240 * 127.15512 * 180.02562 * 24 23 21 26 26 H 1.09008 * 109.46940 * 60.00081 * 1 2 3 27 27 H 1.09000 * 109.47571 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47179 * 300.00330 * 1 2 3 29 29 H 1.08000 * 119.84212 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.92701 * 179.76650 * 5 4 3 31 31 H 1.07999 * 120.07738 * 180.27857 * 6 5 4 32 32 H 0.96996 * 120.00118 * 0.02562 * 10 8 7 33 33 H 0.96999 * 119.99986 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.07657 * 359.97438 * 19 3 2 35 35 H 0.97000 * 126.68992 * 61.35782 * 20 2 1 36 36 H 0.97001 * 124.17945 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.9056 1.8312 -1.0108 5 6 3.3999 3.1234 -1.0156 6 6 3.0424 4.0058 -0.0172 7 6 2.1840 3.5904 1.0027 8 6 1.7971 4.5295 2.0756 9 8 1.0498 4.1647 2.9626 10 7 2.2735 5.7903 2.0715 11 6 1.9147 6.6605 3.0652 12 1 1.2502 6.3367 3.8527 13 6 2.4057 7.9614 3.0608 14 7 3.2135 8.3553 2.1027 15 14 1.9166 9.1488 4.4173 16 1 2.8886 9.0503 5.5357 17 1 1.9138 10.5350 3.8846 18 1 0.5585 8.8053 4.9102 19 6 1.6931 2.2828 1.0043 20 7 2.0483 -0.7476 -1.1587 21 6 2.7627 -1.7752 -0.6652 22 8 3.3327 -2.5957 -1.3573 23 7 2.7766 -1.7923 0.6725 24 6 2.0668 -0.7702 1.1901 25 8 1.8942 -0.5187 2.3635 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1857 1.1456 -1.7969 30 1 4.0634 3.4436 -1.8053 31 1 3.4253 5.0156 -0.0246 32 1 2.8700 6.0811 1.3641 33 1 3.5557 9.2630 2.0995 34 1 1.0284 1.9552 1.7901 35 1 1.9032 -0.5393 -2.0949 36 1 3.2403 -2.4581 1.2042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339924769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:22 Heat of formation + Delta-G solvation = -52.127276 kcal Electronic energy + Delta-G solvation = -24067.108067 eV Core-core repulsion = 20324.092120 eV Total energy + Delta-G solvation = -3743.015947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.78365 -39.49468 -38.77943 -37.68290 -36.42655 -34.60968 -34.15790 -31.94893 -31.45544 -30.55281 -29.37346 -25.53465 -25.23621 -23.34227 -22.84439 -22.60643 -20.70695 -19.55261 -18.50997 -18.15998 -17.25694 -16.95725 -16.40252 -16.04332 -15.84533 -15.57481 -15.06357 -14.64158 -14.39509 -14.32981 -13.97052 -13.68615 -13.57487 -13.35172 -12.83996 -12.73449 -12.43583 -12.10762 -11.70665 -11.43352 -11.29795 -11.18672 -10.99298 -10.59687 -10.48667 -10.43262 -10.33814 -9.83999 -9.69220 -8.74743 -8.63383 -8.57310 -8.14499 -6.62726 -3.95082 1.12158 1.37273 1.51705 2.19205 2.77097 2.84565 3.09856 3.18390 3.24256 3.48023 3.79929 4.03324 4.16808 4.36411 4.53007 4.77134 4.99674 5.08734 5.15705 5.22591 5.26190 5.36656 5.52985 5.63651 5.77587 5.79515 5.84643 6.10050 6.16441 6.43755 6.49829 6.61921 6.68059 6.73978 7.05212 7.18134 7.37087 7.88019 7.89411 8.43444 8.99687 9.34592 9.90532 10.53999 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.029846 B = 0.003344 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.928862 B = 8370.296426 C = 8860.932753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.171 3.829 3 C -0.115 4.115 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.093 4.093 7 C -0.088 4.088 8 C 0.462 3.538 9 O -0.593 6.593 10 N -0.541 5.541 11 C -0.294 4.294 12 H 0.109 0.891 13 C 0.024 3.976 14 N -0.889 5.889 15 Si 0.935 3.065 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.051 4.051 20 N -0.715 5.715 21 C 0.709 3.291 22 O -0.548 6.548 23 N -0.681 5.681 24 C 0.534 3.466 25 O -0.445 6.445 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.394 0.606 33 H 0.276 0.724 34 H 0.140 0.860 35 H 0.441 0.559 36 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -14.164 -9.377 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 C -0.116 4.116 4 C -0.124 4.124 5 C -0.139 4.139 6 C -0.113 4.113 7 C -0.092 4.092 8 C 0.250 3.750 9 O -0.480 6.480 10 N -0.174 5.174 11 C -0.424 4.424 12 H 0.127 0.873 13 C -0.180 4.180 14 N -0.528 5.528 15 Si 0.762 3.238 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.071 4.071 20 N -0.379 5.379 21 C 0.408 3.592 22 O -0.423 6.423 23 N -0.352 5.352 24 C 0.318 3.682 25 O -0.311 6.311 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.286 0.714 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.326 -14.392 -8.532 16.784 hybrid contribution 0.503 0.687 -0.050 0.853 sum -0.824 -13.705 -8.582 16.192 Atomic orbital electron populations 1.22059 0.89156 1.03638 1.05494 1.20102 0.97186 0.90615 0.84054 1.19183 1.01822 0.92359 0.98270 1.20881 0.97206 0.96321 0.98032 1.20993 1.00537 0.93356 0.99032 1.21568 0.96174 1.00078 0.93478 1.20354 0.97824 0.94863 0.96137 1.17678 0.86874 0.82927 0.87547 1.90616 1.40767 1.77260 1.39368 1.41902 1.41425 1.09212 1.24900 1.19869 1.26749 0.91194 1.04556 0.87305 1.25397 0.96168 0.98014 0.98386 1.69582 1.31216 1.19724 1.32277 0.85766 0.79450 0.78644 0.79984 1.20101 1.20689 1.19089 1.21006 0.97721 0.91678 0.96709 1.45636 1.54665 1.28399 1.09244 1.15797 0.79483 0.82168 0.81741 1.91050 1.48697 1.41737 1.60770 1.44328 1.51475 1.30812 1.08628 1.20676 0.77433 0.80225 0.89895 1.90900 1.55923 1.68029 1.16261 0.89778 0.91169 0.89012 0.86125 0.85585 0.85151 0.77157 0.91356 0.84209 0.71406 0.72559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.77 37.16 0.33 -0.93 16 2 C 0.17 1.78 1.17 -133.25 -0.16 1.63 16 3 C -0.11 -1.49 4.82 -104.68 -0.50 -1.99 16 4 C -0.11 -1.24 9.38 -39.48 -0.37 -1.61 16 5 C -0.12 -1.55 10.03 -39.64 -0.40 -1.95 16 6 C -0.09 -1.50 9.54 -39.16 -0.37 -1.87 16 7 C -0.09 -1.68 5.87 -104.97 -0.62 -2.30 16 8 C 0.46 11.19 7.72 -12.38 -0.10 11.09 16 9 O -0.59 -16.36 15.92 5.29 0.08 -16.27 16 10 N -0.54 -13.56 5.23 -11.87 -0.06 -13.62 16 11 C -0.29 -7.98 9.68 -15.00 -0.15 -8.13 16 12 H 0.11 3.09 7.15 -52.48 -0.38 2.71 16 13 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 14 N -0.89 -23.06 13.05 55.50 0.72 -22.34 16 15 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C -0.05 -0.86 8.35 -39.17 -0.33 -1.19 16 20 N -0.71 -6.09 4.57 -54.02 -0.25 -6.33 16 21 C 0.71 7.54 8.99 -88.02 -0.79 6.75 16 22 O -0.55 -7.44 18.04 5.34 0.10 -7.35 16 23 N -0.68 -6.73 5.70 -15.79 -0.09 -6.82 16 24 C 0.53 6.40 7.35 -10.55 -0.08 6.32 16 25 O -0.44 -6.80 17.62 5.59 0.10 -6.70 16 26 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.91 7.33 -51.93 -0.38 0.53 16 29 H 0.12 1.10 6.69 -52.49 -0.35 0.75 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 2.07 6.40 -52.49 -0.34 1.74 16 32 H 0.39 9.27 5.93 -40.82 -0.24 9.03 16 33 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.14 2.51 6.92 -52.48 -0.36 2.15 16 35 H 0.44 2.72 8.55 -40.82 -0.35 2.37 16 36 H 0.43 3.37 8.96 -40.82 -0.37 3.00 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -33.27 318.77 -6.41 -39.68 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -3.17 Total: 13.45 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -3.63 Total: 6.33 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.33 Total: -49.11 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: 0.28 Total: -30.32 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.27 -6.41 -39.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339924769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.445 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds