Wall clock time and date at job start Tue Mar 31 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50711 * 110.53484 * 2 1 4 4 C 1.38382 * 119.92425 * 88.62463 * 3 2 1 5 5 C 1.38338 * 120.28916 * 179.97438 * 4 3 2 6 6 C 1.37975 * 120.14422 * 0.25830 * 5 4 3 7 7 C 1.39561 * 119.85212 * 359.44727 * 6 5 4 8 8 C 1.47845 * 120.14124 * 180.29768 * 7 6 5 9 9 N 1.34779 * 120.00604 * 0.27316 * 8 7 6 10 10 O 1.21557 * 120.00070 * 180.27383 * 8 7 6 11 11 C 1.37932 * 119.92679 * 268.60237 * 3 2 1 12 12 N 1.47309 * 110.60181 * 237.17400 * 2 1 3 13 13 C 1.34526 * 106.61852 * 241.32224 * 12 2 1 14 14 O 1.21525 * 123.76978 * 179.97438 * 13 12 2 15 15 N 1.33790 * 112.46016 * 359.97438 * 13 12 2 16 16 C 1.37503 * 124.17877 * 179.97438 * 15 13 12 17 17 H 1.07993 * 120.00357 * 327.08916 * 16 15 13 18 18 C 1.38899 * 120.00008 * 147.08616 * 16 15 13 19 19 N 1.31383 * 120.00072 * 340.12897 * 18 16 15 20 20 Si 1.86805 * 120.00236 * 160.12012 * 18 16 15 21 21 H 1.48498 * 109.46716 * 90.00091 * 20 18 16 22 22 H 1.48497 * 109.47223 * 210.00660 * 20 18 16 23 23 H 1.48503 * 109.47096 * 330.00420 * 20 18 16 24 24 C 1.34767 * 111.64203 * 0.02562 * 15 13 12 25 25 O 1.21239 * 127.15840 * 180.02562 * 24 15 13 26 26 H 1.08996 * 109.47030 * 59.99629 * 1 2 3 27 27 H 1.08998 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47077 * 300.00219 * 1 2 3 29 29 H 1.07994 * 119.85690 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.92658 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.07393 * 179.70312 * 6 5 4 32 32 H 0.97002 * 119.99296 * 0.02562 * 9 8 7 33 33 H 0.96989 * 120.00339 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.07634 * 359.97438 * 11 3 2 35 35 H 0.97002 * 126.69023 * 61.34390 * 12 2 1 36 36 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.2738 2.0679 1.1990 5 6 2.7594 3.3632 1.2078 6 6 3.0273 4.0109 0.0193 7 6 2.8183 3.3522 -1.1932 8 6 3.1095 4.0378 -2.4703 9 7 3.5830 5.2997 -2.4652 10 8 2.9218 3.4635 -3.5250 11 6 2.3273 2.0455 -1.1950 12 7 2.0483 -0.7475 -1.1587 13 6 2.7628 -1.7751 -0.6653 14 8 3.3320 -2.5959 -1.3574 15 7 2.7766 -1.7923 0.6724 16 6 3.4330 -2.7368 1.4259 17 1 3.5180 -3.7513 1.0658 18 6 3.9868 -2.3859 2.6505 19 7 4.2375 -1.1249 2.9210 20 14 4.3751 -3.7069 3.9129 21 1 5.7619 -4.1963 3.7066 22 1 4.2487 -3.1386 5.2790 23 1 3.4233 -4.8361 3.7565 24 6 2.0668 -0.7704 1.1900 25 8 1.8941 -0.5189 2.3634 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0618 1.5669 2.1319 30 1 2.9248 3.8703 2.1470 31 1 3.4018 5.0239 0.0274 32 1 3.7331 5.7579 -1.6235 33 1 3.7743 5.7493 -3.3030 34 1 2.1597 1.5317 -2.1301 35 1 1.9031 -0.5391 -2.0949 36 1 4.6246 -0.8799 3.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340478545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:38 Heat of formation + Delta-G solvation = -41.957249 kcal Electronic energy + Delta-G solvation = -25074.588790 eV Core-core repulsion = 21332.013848 eV Total energy + Delta-G solvation = -3742.574942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51980 -39.94742 -38.21949 -37.08272 -35.41303 -34.31601 -33.85472 -31.95582 -31.05161 -30.69807 -29.10079 -25.88778 -24.18136 -24.02431 -22.25558 -21.05618 -20.74273 -19.67823 -18.13820 -17.61957 -16.84041 -16.34733 -15.91145 -15.82008 -15.20135 -14.82854 -14.79561 -14.74204 -14.20192 -13.93333 -13.82125 -13.59029 -13.49868 -13.07805 -12.55384 -12.14726 -12.04315 -11.97590 -11.67826 -11.52081 -11.04653 -11.03889 -10.84445 -10.41496 -10.14047 -9.86320 -9.67285 -9.31042 -8.99363 -8.85420 -8.77658 -8.54776 -7.97518 -6.45691 -4.21012 0.93765 1.40295 2.84385 2.93291 3.19295 3.24683 3.29331 3.38548 3.53067 3.89609 4.14883 4.36081 4.45626 4.63019 4.75361 4.93407 5.03333 5.09778 5.22633 5.36866 5.56015 5.58861 5.75865 5.86773 5.94427 6.04611 6.22372 6.27803 6.53254 6.57433 6.63546 6.71588 6.98364 7.18806 7.41913 7.59951 7.92718 8.13942 8.16739 8.68821 8.99151 9.16100 9.75311 10.63814 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.005002 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.149412 B = 5596.391379 C = 6078.693432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.156 3.844 3 C -0.084 4.084 4 C -0.061 4.061 5 C -0.126 4.126 6 C -0.087 4.087 7 C -0.152 4.152 8 C 0.567 3.433 9 N -0.854 5.854 10 O -0.542 6.542 11 C -0.041 4.041 12 N -0.738 5.738 13 C 0.680 3.320 14 O -0.567 6.567 15 N -0.403 5.403 16 C -0.352 4.352 17 H 0.104 0.896 18 C 0.059 3.941 19 N -0.825 5.825 20 Si 0.930 3.070 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.266 1.266 24 C 0.502 3.498 25 O -0.460 6.460 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.400 0.600 33 H 0.403 0.597 34 H 0.132 0.868 35 H 0.423 0.577 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 13.916 -3.002 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 C -0.086 4.086 4 C -0.079 4.079 5 C -0.144 4.144 6 C -0.106 4.106 7 C -0.155 4.155 8 C 0.354 3.646 9 N -0.418 5.418 10 O -0.420 6.420 11 C -0.060 4.060 12 N -0.403 5.403 13 C 0.383 3.617 14 O -0.444 6.444 15 N -0.135 5.135 16 C -0.477 4.477 17 H 0.121 0.879 18 C -0.153 4.153 19 N -0.458 5.458 20 Si 0.755 3.245 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.191 1.191 24 C 0.289 3.711 25 O -0.331 6.331 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.171 0.829 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.230 0.770 33 H 0.233 0.767 34 H 0.150 0.850 35 H 0.266 0.734 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.936 13.128 -3.073 14.358 hybrid contribution 0.561 0.211 0.202 0.632 sum -4.375 13.339 -2.872 14.329 Atomic orbital electron populations 1.21895 0.90844 1.03390 1.03266 1.20230 0.95920 0.89629 0.87810 1.19585 1.01083 0.94389 0.93530 1.21784 0.92937 0.93888 0.99303 1.21078 1.00349 0.95148 0.97874 1.21224 0.98287 0.99112 0.91939 1.19672 1.07266 0.96008 0.92562 1.18321 0.75922 0.81315 0.89013 1.43738 1.69656 1.15897 1.12496 1.90808 1.52711 1.65636 1.32824 1.20912 0.94386 0.92612 0.98082 1.45670 1.57054 1.29796 1.07745 1.16418 0.79627 0.81954 0.83697 1.90823 1.49410 1.42288 1.61839 1.41775 1.41385 1.26035 1.04273 1.19362 1.37024 0.90474 1.00849 0.87872 1.25313 0.94242 0.96943 0.98762 1.69919 1.35513 1.17000 1.23343 0.85908 0.78782 0.80462 0.79304 1.20187 1.20538 1.19075 1.19823 0.80047 0.82952 0.88317 1.90547 1.57153 1.69193 1.16197 0.91331 0.91176 0.90334 0.82931 0.85186 0.85963 0.77011 0.76662 0.84990 0.73444 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.97 37.16 0.33 -1.65 16 2 C 0.16 2.89 1.16 -133.24 -0.15 2.73 16 3 C -0.08 -1.45 4.87 -104.68 -0.51 -1.96 16 4 C -0.06 -1.01 9.18 -39.49 -0.36 -1.38 16 5 C -0.13 -1.68 10.03 -39.64 -0.40 -2.08 16 6 C -0.09 -1.01 9.54 -39.18 -0.37 -1.39 16 7 C -0.15 -2.12 5.87 -104.97 -0.62 -2.74 16 8 C 0.57 7.64 8.05 -12.33 -0.10 7.54 16 9 N -0.85 -7.21 8.83 30.53 0.27 -6.95 16 10 O -0.54 -9.34 17.18 5.32 0.09 -9.25 16 11 C -0.04 -0.65 8.89 -39.19 -0.35 -0.99 16 12 N -0.74 -14.13 5.29 -54.02 -0.29 -14.41 16 13 C 0.68 16.73 8.57 -88.02 -0.75 15.98 16 14 O -0.57 -15.50 17.62 5.34 0.09 -15.40 16 15 N -0.40 -10.59 2.69 -65.57 -0.18 -10.77 16 16 C -0.35 -9.86 9.46 -14.76 -0.14 -10.00 16 17 H 0.10 2.89 7.91 -52.49 -0.41 2.47 16 18 C 0.06 1.59 4.82 -17.50 -0.08 1.50 16 19 N -0.83 -22.86 11.20 55.49 0.62 -22.24 16 20 Si 0.93 20.84 29.60 -169.99 -5.03 15.81 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.50 11.92 5.79 -10.56 -0.06 11.86 16 25 O -0.46 -11.65 13.32 5.59 0.07 -11.57 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.15 2.87 5.77 -52.49 -0.30 2.56 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.12 0.92 6.41 -52.48 -0.34 0.58 16 32 H 0.40 2.24 6.86 -40.82 -0.28 1.96 16 33 H 0.40 2.77 8.93 -40.82 -0.36 2.40 16 34 H 0.13 2.06 6.53 -52.49 -0.34 1.72 16 35 H 0.42 6.80 8.09 -40.82 -0.33 6.47 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -35.57 313.53 -6.38 -41.95 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.20 Total: 10.68 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: -3.57 Total: 17.43 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.43 Total: -54.37 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: 0.26 Total: -36.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.57 -6.38 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340478545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.007 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds