Wall clock time and date at job start Tue Mar 31 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50711 * 110.53484 * 2 1 4 4 C 1.38382 * 119.92425 * 88.62463 * 3 2 1 5 5 C 1.38338 * 120.28916 * 179.97438 * 4 3 2 6 6 C 1.37975 * 120.14422 * 0.25830 * 5 4 3 7 7 C 1.39561 * 119.85212 * 359.44727 * 6 5 4 8 8 C 1.47845 * 120.14124 * 180.29768 * 7 6 5 9 9 N 1.34779 * 120.00604 * 0.27316 * 8 7 6 10 10 O 1.21557 * 120.00070 * 180.27383 * 8 7 6 11 11 C 1.37932 * 119.92679 * 268.60237 * 3 2 1 12 12 N 1.47309 * 110.60181 * 237.17400 * 2 1 3 13 13 C 1.34526 * 106.61852 * 241.32224 * 12 2 1 14 14 O 1.21525 * 123.76978 * 179.97438 * 13 12 2 15 15 N 1.33790 * 112.46016 * 359.97438 * 13 12 2 16 16 C 1.37503 * 124.17877 * 179.97438 * 15 13 12 17 17 H 1.07993 * 120.00357 * 327.08916 * 16 15 13 18 18 C 1.38899 * 120.00008 * 147.08616 * 16 15 13 19 19 N 1.31383 * 120.00072 * 340.12897 * 18 16 15 20 20 Si 1.86805 * 120.00236 * 160.12012 * 18 16 15 21 21 H 1.48498 * 109.46716 * 90.00091 * 20 18 16 22 22 H 1.48497 * 109.47223 * 210.00660 * 20 18 16 23 23 H 1.48503 * 109.47096 * 330.00420 * 20 18 16 24 24 C 1.34767 * 111.64203 * 0.02562 * 15 13 12 25 25 O 1.21239 * 127.15840 * 180.02562 * 24 15 13 26 26 H 1.08996 * 109.47030 * 59.99629 * 1 2 3 27 27 H 1.08998 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47077 * 300.00219 * 1 2 3 29 29 H 1.07994 * 119.85690 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.92658 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.07393 * 179.70312 * 6 5 4 32 32 H 0.97002 * 119.99296 * 0.02562 * 9 8 7 33 33 H 0.96989 * 120.00339 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.07634 * 359.97438 * 11 3 2 35 35 H 0.97002 * 126.69023 * 61.34390 * 12 2 1 36 36 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.2738 2.0679 1.1990 5 6 2.7594 3.3632 1.2078 6 6 3.0273 4.0109 0.0193 7 6 2.8183 3.3522 -1.1932 8 6 3.1095 4.0378 -2.4703 9 7 3.5830 5.2997 -2.4652 10 8 2.9218 3.4635 -3.5250 11 6 2.3273 2.0455 -1.1950 12 7 2.0483 -0.7475 -1.1587 13 6 2.7628 -1.7751 -0.6653 14 8 3.3320 -2.5959 -1.3574 15 7 2.7766 -1.7923 0.6724 16 6 3.4330 -2.7368 1.4259 17 1 3.5180 -3.7513 1.0658 18 6 3.9868 -2.3859 2.6505 19 7 4.2375 -1.1249 2.9210 20 14 4.3751 -3.7069 3.9129 21 1 5.7619 -4.1963 3.7066 22 1 4.2487 -3.1386 5.2790 23 1 3.4233 -4.8361 3.7565 24 6 2.0668 -0.7704 1.1900 25 8 1.8941 -0.5189 2.3634 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0618 1.5669 2.1319 30 1 2.9248 3.8703 2.1470 31 1 3.4018 5.0239 0.0274 32 1 3.7331 5.7579 -1.6235 33 1 3.7743 5.7493 -3.3030 34 1 2.1597 1.5317 -2.1301 35 1 1.9031 -0.5391 -2.0949 36 1 4.6246 -0.8799 3.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340478545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:37 Heat of formation + Delta-G solvation = -70.403166 kcal Electronic energy + Delta-G solvation = -25075.822297 eV Core-core repulsion = 21332.013848 eV Total energy + Delta-G solvation = -3743.808449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.26685 -41.07745 -39.53969 -38.89114 -37.08728 -36.23386 -34.87214 -33.82303 -32.41727 -31.97183 -30.34891 -27.84424 -25.63829 -25.22541 -23.78008 -22.59867 -22.25229 -21.01022 -19.48611 -19.19940 -18.16208 -17.91745 -17.44798 -17.22909 -16.83015 -16.53529 -16.26682 -15.85324 -15.78224 -15.64708 -15.24753 -14.91134 -14.82548 -14.57399 -14.20207 -13.65405 -13.38252 -13.32955 -13.15717 -12.96525 -12.84719 -12.74944 -12.23661 -12.13412 -11.64102 -11.31078 -11.23442 -10.74480 -10.66889 -10.50545 -10.03226 -9.96408 -9.80627 -8.49981 -6.33768 -0.18671 0.26079 1.05629 1.37958 1.43042 1.53696 1.77526 1.84662 2.30999 2.42337 2.49691 2.67044 2.88419 3.08907 3.29499 3.47257 3.81783 3.95273 3.95763 4.11416 4.33536 4.49461 4.57960 4.65112 4.75651 4.89509 4.92428 5.06210 5.20005 5.32200 5.39845 5.49439 5.81128 5.85113 5.89415 5.97887 6.27690 6.40382 6.67815 7.12449 7.15449 7.27775 7.78811 8.59967 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.005002 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.149412 B = 5596.391379 C = 6078.693432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.166 3.834 3 C -0.102 4.102 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.064 4.064 7 C -0.156 4.156 8 C 0.566 3.434 9 N -0.825 5.825 10 O -0.587 6.587 11 C -0.053 4.053 12 N -0.713 5.713 13 C 0.671 3.329 14 O -0.606 6.606 15 N -0.427 5.427 16 C -0.389 4.389 17 H 0.089 0.911 18 C 0.019 3.981 19 N -0.852 5.852 20 Si 0.997 3.003 21 H -0.267 1.267 22 H -0.271 1.271 23 H -0.262 1.262 24 C 0.497 3.503 25 O -0.482 6.482 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.418 0.582 33 H 0.414 0.586 34 H 0.128 0.872 35 H 0.439 0.561 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 16.794 -2.735 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.075 3.925 3 C -0.103 4.103 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.160 4.160 8 C 0.352 3.648 9 N -0.390 5.390 10 O -0.469 6.469 11 C -0.072 4.072 12 N -0.379 5.379 13 C 0.374 3.626 14 O -0.486 6.486 15 N -0.159 5.159 16 C -0.515 4.515 17 H 0.107 0.893 18 C -0.190 4.190 19 N -0.485 5.485 20 Si 0.818 3.182 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.187 1.187 24 C 0.285 3.715 25 O -0.354 6.354 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.177 0.823 31 H 0.192 0.808 32 H 0.251 0.749 33 H 0.247 0.753 34 H 0.146 0.854 35 H 0.285 0.715 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.996 16.101 -2.808 17.090 hybrid contribution 0.584 -0.526 0.109 0.794 sum -4.412 15.574 -2.699 16.411 Atomic orbital electron populations 1.21942 0.87655 1.03865 1.05386 1.20262 0.98064 0.89697 0.84460 1.19401 1.03099 0.93408 0.94438 1.21700 0.94897 0.95710 0.97915 1.21402 0.98864 0.93727 0.99935 1.21694 0.95661 1.00836 0.90062 1.19881 1.06678 0.95455 0.93940 1.18290 0.76013 0.82450 0.88019 1.43496 1.67256 1.14075 1.14188 1.90797 1.54973 1.67025 1.34069 1.20906 0.95243 0.93853 0.97192 1.45480 1.55437 1.28068 1.08878 1.16586 0.80017 0.82640 0.83355 1.90772 1.51362 1.44053 1.62450 1.42059 1.42172 1.26684 1.04948 1.19514 1.38972 0.90732 1.02264 0.89322 1.26237 0.93503 0.99270 0.99987 1.69991 1.36030 1.18626 1.23844 0.84927 0.78901 0.77715 0.76679 1.19175 1.19559 1.18656 1.20602 0.79038 0.82380 0.89487 1.90510 1.57724 1.69532 1.17654 0.87998 0.91517 0.89407 0.85659 0.82303 0.80812 0.74921 0.75309 0.85420 0.71537 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.97 71.98 0.65 -3.06 16 2 C 0.17 6.18 1.16 2.24 0.00 6.19 16 3 C -0.10 -3.45 4.87 -19.90 -0.10 -3.55 16 4 C -0.08 -2.74 9.18 22.33 0.20 -2.53 16 5 C -0.12 -2.87 10.03 22.23 0.22 -2.64 16 6 C -0.06 -1.22 9.54 22.53 0.21 -1.01 16 7 C -0.16 -3.93 5.87 -20.09 -0.12 -4.05 16 8 C 0.57 13.67 8.05 86.79 0.70 14.36 16 9 N -0.83 -10.53 8.83 -175.60 -1.55 -12.08 16 10 O -0.59 -19.43 17.18 -3.89 -0.07 -19.50 16 11 C -0.05 -1.61 8.89 22.52 0.20 -1.41 16 12 N -0.71 -27.75 5.29 -443.26 -2.34 -30.09 16 13 C 0.67 34.32 8.57 179.44 1.54 35.86 16 14 O -0.61 -34.61 17.62 -3.80 -0.07 -34.68 16 15 N -0.43 -23.34 2.69 -598.62 -1.61 -24.95 16 16 C -0.39 -22.79 9.46 83.96 0.79 -22.00 16 17 H 0.09 5.25 7.91 -2.91 -0.02 5.23 16 18 C 0.02 1.03 4.82 84.92 0.41 1.44 16 19 N -0.85 -48.33 11.20 21.65 0.24 -48.08 16 20 Si 1.00 43.43 29.60 68.60 2.03 45.46 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 C 0.50 24.32 5.79 87.94 0.51 24.83 16 25 O -0.48 -25.25 13.32 -2.90 -0.04 -25.29 16 26 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.13 4.82 5.77 -2.91 -0.02 4.80 16 30 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.17 1.46 6.41 -2.91 -0.02 1.44 16 32 H 0.42 2.38 6.86 -92.71 -0.64 1.75 16 33 H 0.41 4.11 8.93 -92.72 -0.83 3.28 16 34 H 0.13 3.93 6.53 -2.91 -0.02 3.91 16 35 H 0.44 14.13 8.09 -92.71 -0.75 13.38 16 36 H 0.28 14.62 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -82.20 313.53 0.80 -81.41 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -1.02 Total: 25.38 kcal Atomic # 6 Polarization: 37.20 SS G_CDS: 5.23 Total: 42.43 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -5.26 Total: -115.21 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -0.17 Total: -79.47 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -82.20 0.80 -81.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340478545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.002 kcal (2) G-P(sol) polarization free energy of solvation -82.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds