Wall clock time and date at job start Tue Mar 31 2020 03:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29949 * 126.28837 * 2 1 4 4 O 1.21296 * 110.25651 * 179.97438 * 3 2 1 5 5 C 1.33651 * 109.80752 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.55070 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47207 * 119.97287 * 6 5 4 8 8 C 1.53000 * 109.46844 * 239.97721 * 6 5 4 9 9 N 1.46505 * 109.46897 * 359.97226 * 6 5 4 10 10 S 1.65596 * 120.00459 * 277.29904 * 9 6 5 11 11 O 1.42100 * 104.28002 * 176.79124 * 10 9 6 12 12 O 1.42098 * 104.27660 * 304.65684 * 10 9 6 13 13 C 1.81408 * 104.44649 * 60.72238 * 10 9 6 14 14 C 1.52996 * 109.46790 * 175.36951 * 13 10 9 15 15 C 1.50703 * 109.46791 * 179.97438 * 14 13 10 16 16 H 1.08004 * 120.00184 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00045 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99969 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99777 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47041 * 89.99823 * 19 17 15 21 21 H 1.48495 * 109.46874 * 209.99474 * 19 17 15 22 22 H 1.48500 * 109.47096 * 329.99655 * 19 17 15 23 23 N 1.31125 * 106.89776 * 359.76912 * 5 4 3 24 24 H 1.08996 * 109.47452 * 90.02293 * 1 2 3 25 25 H 1.09001 * 109.47238 * 210.02308 * 1 2 3 26 26 H 1.09000 * 109.47125 * 330.02347 * 1 2 3 27 27 H 1.09000 * 109.47202 * 59.99921 * 7 6 5 28 28 H 1.09002 * 109.47210 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47505 * 300.00158 * 7 6 5 30 30 H 1.08998 * 109.47634 * 53.49743 * 8 6 5 31 31 H 1.09003 * 109.46771 * 173.49248 * 8 6 5 32 32 H 1.09003 * 109.46987 * 293.49307 * 8 6 5 33 33 H 0.97008 * 119.99447 * 97.30667 * 9 6 5 34 34 H 1.08996 * 109.47016 * 295.37315 * 13 10 9 35 35 H 1.08993 * 109.46846 * 55.37245 * 13 10 9 36 36 H 1.08996 * 109.47638 * 299.99983 * 14 13 10 37 37 H 1.08996 * 109.47662 * 60.00318 * 14 13 10 38 38 H 0.97001 * 119.99672 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7125 0.0005 5 6 3.5298 -0.6211 0.0015 6 6 4.7969 -1.4369 0.0029 7 6 4.8348 -2.3181 1.2530 8 6 4.8358 -2.3207 -1.2455 9 7 5.9552 -0.5399 0.0024 10 16 6.4990 0.1097 -1.4205 11 8 7.5618 0.9683 -1.0303 12 8 6.7356 -1.0177 -2.2525 13 6 5.0954 1.0762 -2.0423 14 6 5.5139 1.8264 -3.3084 15 6 4.3477 2.6289 -3.8253 16 1 3.4028 2.6064 -3.3028 17 6 4.4875 3.3927 -4.9647 18 7 3.4696 4.0926 -5.4161 19 14 6.1221 3.4322 -5.8680 20 1 6.1504 2.3528 -6.8875 21 1 6.2869 4.7482 -6.5358 22 1 7.2283 3.2269 -4.8988 23 7 2.3030 -1.0841 0.0065 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 3.9730 -2.9855 1.2534 28 1 5.7515 -2.9078 1.2543 29 1 4.8071 -1.6885 2.1423 30 1 4.6929 -1.7034 -2.1324 31 1 5.8011 -2.8235 -1.3047 32 1 4.0413 -3.0648 -1.1888 33 1 6.4037 -0.3265 0.8357 34 1 4.2672 0.4065 -2.2738 35 1 4.7823 1.7922 -1.2825 36 1 6.3421 2.4961 -3.0769 37 1 5.8271 1.1105 -4.0682 38 1 3.5678 4.6296 -6.2179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340739351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:36 Heat of formation + Delta-G solvation = -3.020599 kcal Electronic energy + Delta-G solvation = -24274.594480 eV Core-core repulsion = 20669.151909 eV Total energy + Delta-G solvation = -3605.442571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.60958 -38.28821 -36.72030 -36.04970 -35.68287 -33.98532 -32.58481 -31.50532 -30.64341 -29.17899 -27.79118 -25.97588 -24.63235 -22.80191 -21.40845 -20.91105 -19.07897 -18.19727 -17.95197 -17.53330 -16.98276 -16.23473 -15.80598 -15.47166 -14.73766 -14.30638 -13.96319 -13.75880 -13.71429 -13.59751 -13.14977 -13.09261 -12.79894 -12.56487 -12.45882 -12.09421 -11.97472 -11.90903 -11.71405 -11.65221 -11.46414 -11.26626 -11.21415 -11.02383 -10.90508 -10.49331 -10.34282 -10.08362 -9.84690 -9.59157 -9.30991 -8.65300 -6.14949 -4.16098 0.51895 1.12048 2.19612 2.60175 2.68363 3.26329 3.33867 3.37743 3.58836 3.96076 4.04758 4.32786 4.36289 4.39246 4.55190 4.78902 4.92934 5.15835 5.30240 5.33143 5.35333 5.38053 5.41356 5.47686 5.53484 5.59047 5.74447 5.79904 5.87735 5.96288 6.15962 6.27444 6.75455 6.79666 6.92639 7.55005 8.16628 8.38572 8.87306 9.44168 10.97554 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.006500 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.212247 B = 4306.622884 C = 5782.328170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.163 3.837 3 N -0.369 5.369 4 O 0.091 5.909 5 C 0.150 3.850 6 C 0.278 3.722 7 C -0.144 4.144 8 C -0.171 4.171 9 N -1.114 6.114 10 S 2.584 3.416 11 O -0.958 6.958 12 O -0.957 6.957 13 C -0.583 4.583 14 C -0.002 4.002 15 C -0.517 4.517 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.868 3.132 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.261 1.261 23 N -0.468 5.468 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.422 0.578 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.036 0.964 37 H 0.027 0.973 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -13.747 14.481 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.074 4.074 6 C 0.185 3.815 7 C -0.203 4.203 8 C -0.230 4.230 9 N -0.870 5.870 10 S 2.682 3.318 11 O -0.948 6.948 12 O -0.947 6.947 13 C -0.717 4.717 14 C -0.042 4.042 15 C -0.556 4.556 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.533 5.533 19 Si 0.694 3.306 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.185 1.185 23 N -0.202 5.202 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.256 0.744 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.510 -13.296 13.837 19.197 hybrid contribution 0.254 0.602 -0.141 0.669 sum -0.256 -12.694 13.695 18.675 Atomic orbital electron populations 1.20133 0.82878 1.04368 1.04610 1.25933 1.00659 0.83278 1.01128 1.74704 0.89264 1.23658 1.19831 1.85418 1.22520 1.24083 1.64846 1.29543 0.97532 0.82928 0.97365 1.18530 0.75900 0.86124 1.00934 1.22086 1.04738 0.99310 0.94134 1.22651 1.05899 1.00404 0.94040 1.56035 1.41492 1.61753 1.27711 1.05898 0.77138 0.75301 0.73487 1.93574 1.51975 1.68185 1.81073 1.93593 1.84689 1.49253 1.67145 1.30448 1.16779 1.13347 1.11088 1.19390 0.99393 0.95843 0.89541 1.20818 0.97263 1.26847 1.10632 0.90514 1.24978 0.96584 0.94701 0.96793 1.69886 1.30601 1.29431 1.23382 0.86943 0.84858 0.78077 0.80696 1.19701 1.20727 1.18531 1.71736 0.99060 1.29507 1.19883 0.89072 0.89199 0.89507 0.89570 0.89467 0.91330 0.90597 0.87703 0.89489 0.74353 0.86806 0.84682 0.94612 0.95490 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 36.00 0.38 -0.25 16 2 C 0.16 2.35 8.22 -156.37 -1.28 1.06 16 3 N -0.37 -6.21 12.16 30.90 0.38 -5.83 16 4 O 0.09 1.45 7.64 18.08 0.14 1.59 16 5 C 0.15 2.04 5.47 -13.06 -0.07 1.96 16 6 C 0.28 3.07 1.13 -132.97 -0.15 2.92 16 7 C -0.14 -1.07 8.63 37.15 0.32 -0.74 16 8 C -0.17 -1.98 6.98 37.16 0.26 -1.72 16 9 N -1.11 -13.03 5.23 -0.40 0.00 -13.03 16 10 S 2.58 42.71 5.01 -107.50 -0.54 42.17 16 11 O -0.96 -18.34 18.08 -57.54 -1.04 -19.38 16 12 O -0.96 -16.93 14.38 -57.54 -0.83 -17.76 16 13 C -0.58 -11.26 4.00 37.16 0.15 -11.11 16 14 C 0.00 -0.06 4.05 -27.88 -0.11 -0.17 16 15 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 16 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 19 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 23 N -0.47 -6.46 11.55 -9.86 -0.11 -6.57 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.04 5.73 -51.93 -0.30 0.74 16 31 H 0.10 1.15 7.28 -51.93 -0.38 0.77 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.42 3.74 8.68 -34.47 -0.30 3.45 16 34 H 0.11 2.12 6.21 -51.93 -0.32 1.79 16 35 H 0.14 2.54 6.59 -51.93 -0.34 2.20 16 36 H 0.04 0.85 7.20 -51.93 -0.37 0.48 16 37 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -35.68 322.89 -6.93 -42.61 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.95 Total: 2.13 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.94 Total: -21.08 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 1.03 Total: -52.08 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.73 Total: -35.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 42.71 SS G_CDS: -0.54 Total: 42.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.68 -6.93 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340739351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.589 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds