Wall clock time and date at job start Tue Mar 31 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 117.00045 * 2 1 4 4 C 1.38743 * 119.97760 * 180.02562 * 3 2 1 5 5 C 1.38067 * 120.01931 * 180.25595 * 4 3 2 6 6 C 1.38917 * 119.97529 * 359.51256 * 5 4 3 7 7 N 1.39877 * 120.02002 * 180.20759 * 6 5 4 8 8 C 1.34771 * 120.00301 * 144.66824 * 7 6 5 9 9 O 1.21476 * 119.99915 * 5.07383 * 8 7 6 10 10 C 1.48714 * 120.00153 * 185.07143 * 8 7 6 11 11 O 1.21519 * 120.00280 * 4.91150 * 10 8 7 12 12 N 1.34786 * 120.00123 * 184.90992 * 10 8 7 13 13 C 1.36126 * 119.99888 * 354.66020 * 12 10 8 14 14 H 1.08000 * 119.99888 * 313.58156 * 13 12 10 15 15 C 1.39575 * 120.00174 * 133.57840 * 13 12 10 16 16 N 1.31024 * 119.99635 * 2.19805 * 15 13 12 17 17 Si 1.86798 * 120.00230 * 182.20104 * 15 13 12 18 18 H 1.48503 * 109.46875 * 90.00219 * 17 15 13 19 19 H 1.48497 * 109.47232 * 209.99917 * 17 15 13 20 20 H 1.48499 * 109.47157 * 330.00064 * 17 15 13 21 21 C 1.46497 * 119.99810 * 174.66366 * 12 10 8 22 22 C 1.47198 * 109.47237 * 94.09322 * 21 12 10 23 23 N 9.56245 * 121.90306 * 154.14167 * 4 1 2 24 24 C 1.38917 * 119.96295 * 0.50774 * 6 5 4 25 25 C 1.38062 * 119.97510 * 359.72629 * 24 6 5 26 26 H 1.08996 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47041 * 300.00364 * 1 2 3 28 28 H 1.09001 * 109.46821 * 59.99579 * 1 2 3 29 29 H 1.07995 * 119.99562 * 359.97271 * 4 3 2 30 30 H 1.07996 * 120.00947 * 179.72038 * 5 4 3 31 31 H 0.96999 * 119.99396 * 324.67468 * 7 6 5 32 32 H 0.97000 * 119.99607 * 179.97438 * 16 15 13 33 33 H 1.09007 * 109.46365 * 214.09032 * 21 12 10 34 34 H 1.08995 * 109.47255 * 334.08368 * 21 12 10 35 35 H 1.07998 * 120.01158 * 179.70360 * 24 6 5 36 36 H 1.08002 * 119.98871 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0596 2.5132 0.0048 6 6 3.3033 3.6785 0.0005 7 7 3.9383 4.9248 0.0015 8 6 3.3985 5.9567 -0.6768 9 8 2.3154 5.8314 -1.2122 10 6 4.1289 7.2488 -0.7698 11 8 5.2501 7.3474 -0.3116 12 7 3.5473 8.3106 -1.3623 13 6 2.3377 8.1723 -1.9711 14 1 2.1590 7.3385 -2.6338 15 6 1.3284 9.1080 -1.7389 16 7 1.5590 10.1428 -0.9691 17 14 -0.3511 8.8850 -2.5257 18 1 -1.2205 8.0917 -1.6201 19 1 -0.9669 10.2151 -2.7634 20 1 -0.2009 8.1707 -3.8190 21 6 4.2170 9.6135 -1.3510 22 6 5.0004 9.7732 -2.5870 23 7 5.6062 9.8946 -3.5448 24 6 1.9161 3.6054 0.0014 25 6 1.2902 2.3748 0.0010 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 4.0196 0.3775 -0.0005 30 1 5.1381 2.5691 0.0089 31 1 4.7673 5.0463 0.4903 32 1 0.8577 10.7933 -0.8080 33 1 3.4703 10.4052 -1.2892 34 1 4.8817 9.6730 -0.4892 35 1 1.3274 4.5108 0.0029 36 1 0.2117 2.3176 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342444293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:37 Heat of formation + Delta-G solvation = -27.175127 kcal Electronic energy + Delta-G solvation = -23879.661566 eV Core-core repulsion = 20137.727625 eV Total energy + Delta-G solvation = -3741.933941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51859 -39.67261 -38.29129 -36.86424 -35.93593 -34.96865 -33.80893 -31.85747 -31.02678 -29.17995 -28.13193 -27.14602 -25.31535 -23.59362 -22.69430 -21.35597 -19.65615 -18.77787 -18.14207 -17.56357 -16.68776 -16.21168 -15.80991 -15.68626 -15.65113 -15.06534 -14.58857 -14.41811 -14.21027 -13.75212 -13.51656 -13.39193 -12.99451 -12.95453 -12.63236 -12.56650 -12.05315 -12.02955 -11.92946 -11.44053 -11.39546 -11.29661 -11.20883 -10.85753 -10.53747 -10.50288 -10.19167 -9.62594 -9.42896 -8.95518 -8.51761 -7.96073 -7.56882 -6.63123 -4.40962 1.35271 1.46512 2.30629 2.94062 3.10597 3.16070 3.21871 3.26048 3.57172 3.57761 3.81665 4.00611 4.14412 4.66325 4.71662 4.85566 4.91883 5.03992 5.06733 5.16309 5.30164 5.38479 5.46168 5.57102 5.67408 5.99276 6.08903 6.21643 6.47015 6.49323 6.57721 6.78137 6.99042 7.33481 7.40624 7.41570 7.64306 8.08362 8.33479 8.50517 8.76547 8.96029 9.37769 10.36298 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.004260 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.468788 B = 6570.443674 C = 7901.023383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.101 3.899 4 C -0.134 4.134 5 C -0.109 4.109 6 C 0.123 3.877 7 N -0.662 5.662 8 C 0.511 3.489 9 O -0.475 6.475 10 C 0.455 3.545 11 O -0.586 6.586 12 N -0.390 5.390 13 C -0.320 4.320 14 H 0.111 0.889 15 C 0.050 3.950 16 N -0.867 5.867 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.179 3.821 22 C 0.220 3.780 23 N -0.471 5.471 24 C -0.082 4.082 25 C -0.187 4.187 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.417 0.583 32 H 0.279 0.721 33 H 0.169 0.831 34 H 0.106 0.894 35 H 0.147 0.853 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -12.795 5.491 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.056 3.944 4 C -0.153 4.153 5 C -0.130 4.130 6 C 0.029 3.971 7 N -0.310 5.310 8 C 0.295 3.705 9 O -0.346 6.346 10 C 0.241 3.759 11 O -0.472 6.472 12 N -0.108 5.108 13 C -0.449 4.449 14 H 0.129 0.871 15 C -0.156 4.156 16 N -0.505 5.505 17 Si 0.759 3.241 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.054 3.946 22 C -0.098 4.098 23 N -0.150 5.150 24 C -0.103 4.103 25 C -0.207 4.207 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.254 0.746 32 H 0.090 0.910 33 H 0.185 0.815 34 H 0.124 0.876 35 H 0.164 0.836 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.360 -12.565 3.929 13.375 hybrid contribution -0.976 0.121 0.230 1.010 sum -3.337 -12.443 4.159 13.538 Atomic orbital electron populations 1.23014 0.78698 1.03544 1.01474 1.86034 1.21134 1.27107 1.89273 1.18988 0.92322 0.84035 0.99089 1.20115 0.91217 0.97843 1.06116 1.20745 0.99806 0.90356 1.02089 1.17712 0.91881 0.84801 1.02746 1.43263 1.27999 1.08024 1.51727 1.20252 0.86302 0.85050 0.78929 1.90757 1.19493 1.81202 1.43131 1.19715 0.87311 0.86138 0.82780 1.90665 1.19737 1.84630 1.52175 1.42959 1.17644 1.05771 1.44447 1.19961 0.86607 1.12651 1.25672 0.87111 1.25676 1.00200 0.94835 0.94918 1.69200 1.34678 1.11445 1.35154 0.85799 0.80802 0.77701 0.79768 1.19747 1.20753 1.19074 1.19689 0.95788 0.91674 0.87489 1.30455 0.92114 0.92128 0.95102 1.81149 1.12174 1.09691 1.12022 1.21238 0.93331 0.98406 0.97296 1.21142 1.00010 0.91779 1.07729 0.88558 0.92720 0.92654 0.85108 0.84949 0.74641 0.90968 0.81507 0.87581 0.83565 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.85 10.50 -19.62 -0.21 -4.06 16 3 C 0.10 1.33 6.69 -39.21 -0.26 1.07 16 4 C -0.13 -1.67 9.98 -39.46 -0.39 -2.06 16 5 C -0.11 -1.42 9.96 -39.39 -0.39 -1.81 16 6 C 0.12 1.92 6.29 -83.68 -0.53 1.39 16 7 N -0.66 -11.09 5.31 -10.45 -0.06 -11.15 16 8 C 0.51 10.51 7.61 -11.93 -0.09 10.42 16 9 O -0.48 -10.60 11.07 5.39 0.06 -10.54 16 10 C 0.45 10.18 7.66 -11.93 -0.09 10.09 16 11 O -0.59 -13.29 16.06 5.35 0.09 -13.21 16 12 N -0.39 -9.03 2.46 -118.75 -0.29 -9.32 16 13 C -0.32 -7.75 7.45 -15.15 -0.11 -7.87 16 14 H 0.11 2.80 6.43 -52.49 -0.34 2.46 16 15 C 0.05 1.18 5.39 -17.40 -0.09 1.09 16 16 N -0.87 -20.19 10.80 55.53 0.60 -19.59 16 17 Si 0.93 19.15 29.56 -169.99 -5.02 14.12 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 21 C 0.18 3.78 5.54 -6.83 -0.04 3.74 16 22 C 0.22 4.80 15.75 -20.64 -0.32 4.47 16 23 N -0.47 -10.78 18.56 42.30 0.79 -9.99 16 24 C -0.08 -1.31 8.69 -39.39 -0.34 -1.65 16 25 C -0.19 -2.55 9.03 -39.46 -0.36 -2.91 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.42 6.19 8.31 -40.82 -0.34 5.85 16 32 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 33 H 0.17 3.61 5.23 -51.92 -0.27 3.33 16 34 H 0.11 2.07 7.38 -51.93 -0.38 1.68 16 35 H 0.15 2.58 6.24 -52.49 -0.33 2.25 16 36 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -28.24 323.24 -4.40 -32.64 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.19 Total: 9.03 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: -2.03 Total: 17.19 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.04 Total: -50.05 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.06 Total: -27.80 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.24 -4.40 -32.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342444293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.464 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds