Wall clock time and date at job start Tue Mar 31 2020 03:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29867 * 124.83393 * 2 1 4 4 C 1.36128 * 108.76846 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.76717 * 180.02562 * 4 3 2 6 6 C 1.39193 * 119.46935 * 180.02562 * 5 4 3 7 7 C 1.47710 * 119.95427 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99747 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00182 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00081 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99238 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00123 * 179.97438 * 11 10 9 14 14 C 1.37094 * 119.99899 * 179.97438 * 13 11 10 15 15 H 1.08007 * 120.00108 * 359.97438 * 14 13 11 16 16 C 1.38954 * 120.00045 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99884 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99803 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47734 * 59.99961 * 18 16 14 20 20 H 1.48500 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47307 * 299.99577 * 18 16 14 22 22 C 1.40051 * 120.09051 * 359.97438 * 6 5 4 23 23 C 1.36525 * 120.47836 * 0.02562 * 22 6 5 24 24 C 1.38897 * 120.18713 * 359.97438 * 23 22 6 25 25 O 1.34249 * 124.83327 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47316 * 90.00510 * 1 2 3 27 27 H 1.09006 * 109.47027 * 210.00184 * 1 2 3 28 28 H 1.09001 * 109.47451 * 329.99997 * 1 2 3 29 29 H 1.08000 * 120.26701 * 0.02562 * 5 4 3 30 30 H 0.96998 * 120.00163 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47270 * 299.99438 * 10 9 7 32 32 H 1.09000 * 109.47486 * 59.99192 * 10 9 7 33 33 H 0.97002 * 119.99951 * 359.97438 * 13 11 10 34 34 H 0.96992 * 119.99857 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.75530 * 180.29369 * 22 6 5 36 36 H 1.08001 * 119.90321 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7609 1.3891 -0.0004 6 6 5.9619 0.6855 -0.0017 7 6 7.2452 1.4170 -0.0010 8 8 7.2519 2.6327 0.0003 9 7 8.4087 0.7367 -0.0017 10 6 9.6814 1.4621 -0.0004 11 6 10.8215 0.4765 -0.0009 12 8 10.5932 -0.7147 -0.0018 13 7 12.0946 0.9188 -0.0005 14 6 13.1317 0.0222 -0.0004 15 1 12.9285 -1.0386 -0.0004 16 6 14.4443 0.4781 0.0006 17 7 14.6916 1.7687 0.0011 18 14 15.8573 -0.7436 -0.0001 19 1 15.7746 -1.5957 -1.2135 20 1 17.1475 -0.0083 0.0019 21 1 15.7735 -1.5982 1.2115 22 6 5.9553 -0.7150 -0.0027 23 6 4.7754 -1.4019 -0.0028 24 6 3.5678 -0.7156 -0.0015 25 8 2.2738 -1.1019 0.0005 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 4.7628 2.4691 0.0008 30 1 8.4034 -0.2333 -0.0024 31 1 9.7429 2.0897 -0.8895 32 1 9.7424 2.0873 0.8904 33 1 12.2771 1.8715 -0.0001 34 1 15.6078 2.0870 0.0022 35 1 6.8903 -1.2555 0.0011 36 1 4.7811 -2.4818 -0.0040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343514812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:08 Heat of formation + Delta-G solvation = -34.510606 kcal Electronic energy + Delta-G solvation = -22756.204426 eV Core-core repulsion = 19013.952394 eV Total energy + Delta-G solvation = -3742.252031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.58681 -40.02584 -38.38311 -37.53862 -35.22788 -34.56151 -33.77903 -32.07736 -31.41912 -31.10235 -28.94727 -27.39106 -24.88238 -23.85037 -22.66783 -21.91053 -20.83712 -19.69995 -18.59139 -18.06231 -17.81650 -17.20269 -16.68389 -16.04942 -15.35208 -15.33174 -14.94221 -14.49744 -14.41954 -14.07498 -13.99752 -13.97381 -13.68469 -13.43223 -13.31820 -13.00591 -12.62606 -12.26786 -11.98003 -11.83698 -11.65798 -11.58252 -11.12729 -10.79613 -10.52933 -10.34471 -9.98441 -9.65856 -9.16393 -8.84756 -8.81064 -8.68336 -8.13634 -6.54269 -3.96538 0.39728 0.51989 2.04113 2.10229 2.74907 3.07494 3.11698 3.20200 3.24312 3.52442 3.59377 3.70872 4.08370 4.15524 4.52574 4.63808 4.69148 4.74180 4.83759 4.86192 5.00347 5.05775 5.14097 5.18728 5.51346 5.71907 5.81888 5.87380 5.90902 5.92001 5.95647 6.02524 6.20011 6.55564 7.25470 7.43078 7.67324 7.88106 8.28879 8.41576 9.01156 9.35463 9.82932 10.62385 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.045881 B = 0.002311 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.129869 B =12115.663307 C =12705.347298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.243 3.757 3 N -0.473 5.473 4 C 0.011 3.989 5 C 0.004 3.996 6 C -0.128 4.128 7 C 0.559 3.441 8 O -0.541 6.541 9 N -0.699 5.699 10 C 0.108 3.892 11 C 0.427 3.573 12 O -0.599 6.599 13 N -0.547 5.547 14 C -0.306 4.306 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.893 5.893 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.060 4.060 23 C -0.096 4.096 24 C 0.027 3.973 25 O -0.213 6.213 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.411 0.589 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.151 0.849 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.792 -3.785 0.001 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 N -0.203 5.203 4 C -0.100 4.100 5 C -0.016 4.016 6 C -0.132 4.132 7 C 0.345 3.655 8 O -0.419 6.419 9 N -0.354 5.354 10 C -0.019 4.019 11 C 0.212 3.788 12 O -0.486 6.486 13 N -0.181 5.181 14 C -0.436 4.436 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.761 3.239 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.024 4.024 25 O -0.105 6.105 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.169 0.831 30 H 0.250 0.750 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.891 -2.986 0.002 24.076 hybrid contribution 1.172 -1.106 -0.008 1.612 sum -22.718 -4.092 -0.006 23.084 Atomic orbital electron populations 1.20428 0.80701 1.05672 1.05269 1.26511 0.96695 0.78165 0.95456 1.70647 1.00750 1.28901 1.19982 1.19700 0.92072 0.91205 1.06990 1.20391 0.87191 1.01162 0.92812 1.19782 0.93413 0.93542 1.06502 1.17917 0.83345 0.87062 0.77141 1.90787 1.87561 1.13157 1.50434 1.45592 1.04583 1.11632 1.73545 1.21008 0.82725 0.94583 1.03591 1.19700 0.84128 0.89109 0.85824 1.90488 1.83902 1.16591 1.57595 1.41784 1.03928 1.10053 1.62367 1.19684 0.84085 0.91334 1.48478 0.87676 1.25340 0.98914 0.96753 0.96700 1.69604 1.21945 1.12776 1.49012 0.85858 0.79243 0.79620 0.79161 1.19758 1.20845 1.19765 1.21028 0.98138 0.92968 0.95739 1.19537 0.86865 1.00754 1.04284 1.20529 0.83855 0.94490 1.03494 1.84478 1.15311 1.36325 1.74356 0.88260 0.88808 0.87565 0.83066 0.75002 0.89497 0.89504 0.76975 0.91483 0.83180 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.24 2.34 8.23 -13.11 -0.11 2.24 16 3 N -0.47 -5.94 11.34 -8.73 -0.10 -6.04 16 4 C 0.01 0.15 7.23 -84.73 -0.61 -0.46 16 5 C 0.00 0.06 9.64 -38.84 -0.37 -0.32 16 6 C -0.13 -1.71 5.87 -104.99 -0.62 -2.33 16 7 C 0.56 8.92 7.77 -12.39 -0.10 8.82 16 8 O -0.54 -10.12 16.33 5.30 0.09 -10.03 16 9 N -0.70 -11.34 5.48 -62.47 -0.34 -11.68 16 10 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 11 C 0.43 9.52 7.85 -10.98 -0.09 9.43 16 12 O -0.60 -14.81 15.24 5.55 0.08 -14.73 16 13 N -0.55 -13.29 5.29 -10.96 -0.06 -13.35 16 14 C -0.31 -8.19 9.68 -14.93 -0.14 -8.33 16 15 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.57 13.05 55.50 0.72 -22.84 16 18 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.06 -0.66 9.47 -39.52 -0.37 -1.04 16 23 C -0.10 -0.98 9.99 -39.96 -0.40 -1.38 16 24 C 0.03 0.33 7.43 -38.49 -0.29 0.04 16 25 O -0.21 -2.31 10.77 3.78 0.04 -2.27 16 26 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.15 2.05 7.64 -52.49 -0.40 1.65 16 30 H 0.41 6.32 5.44 -40.82 -0.22 6.10 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.40 9.27 7.90 -40.82 -0.32 8.94 16 34 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.15 1.44 6.37 -52.48 -0.33 1.10 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -33.01 325.27 -5.86 -38.87 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.33 Total: 12.62 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -2.85 Total: 9.29 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.23 Total: -53.91 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: 0.21 Total: -27.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.01 -5.86 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343514812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.357 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds